Wall clock time and date at job start Tue Mar 31 2020 13:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47072 * 2 1 4 4 C 1.53003 * 109.46857 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46762 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00129 * 270.00173 * 5 4 3 7 7 H 1.07999 * 119.99603 * 139.65021 * 6 5 4 8 8 C 1.38951 * 119.99961 * 319.64462 * 6 5 4 9 9 N 1.31418 * 119.99800 * 159.54692 * 8 6 5 10 10 Si 1.86798 * 120.00355 * 339.55237 * 8 6 5 11 11 H 1.48499 * 109.47162 * 92.80272 * 10 8 6 12 12 H 1.48495 * 109.47449 * 212.80355 * 10 8 6 13 13 H 1.48496 * 109.46948 * 332.80725 * 10 8 6 14 14 C 1.34780 * 119.99500 * 90.00375 * 5 4 3 15 15 O 1.21289 * 120.00079 * 4.77304 * 14 5 4 16 16 C 1.50697 * 119.99787 * 184.77310 * 14 5 4 17 17 C 1.50699 * 109.47180 * 174.60251 * 16 14 5 18 18 C 1.37960 * 120.07515 * 100.51607 * 17 16 14 19 19 C 1.38351 * 120.14945 * 179.97438 * 18 17 16 20 20 C 1.38390 * 120.30119 * 0.04043 * 19 18 17 21 21 C 1.37925 * 120.15340 * 0.02562 * 20 19 18 22 22 C 1.39607 * 120.07641 * 280.24134 * 17 16 14 23 23 C 1.47729 * 120.14999 * 0.02562 * 22 17 16 24 24 O 1.21473 * 119.99727 * 5.64519 * 23 22 17 25 25 O 1.34710 * 120.00153 * 185.64802 * 23 22 17 26 26 C 1.45202 * 116.99628 * 179.97438 * 25 23 22 27 27 H 1.08998 * 109.47080 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47018 * 300.00428 * 1 2 3 29 29 H 1.08991 * 109.47358 * 60.00353 * 1 2 3 30 30 H 1.08997 * 109.47697 * 239.99429 * 2 1 3 31 31 H 1.09004 * 109.47058 * 119.99497 * 2 1 3 32 32 H 1.08997 * 109.47121 * 59.99715 * 3 2 1 33 33 H 1.08994 * 109.46747 * 299.99496 * 3 2 1 34 34 H 1.09002 * 109.46930 * 59.99757 * 4 3 2 35 35 H 1.08991 * 109.47660 * 299.99701 * 4 3 2 36 36 H 0.96991 * 119.99924 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.47169 * 294.60753 * 16 14 5 38 38 H 1.09001 * 109.46967 * 54.59887 * 16 14 5 39 39 H 1.07997 * 119.92727 * 0.02562 * 18 17 16 40 40 H 1.08002 * 119.85216 * 180.02562 * 19 18 17 41 41 H 1.08000 * 119.92224 * 179.97438 * 20 19 18 42 42 H 1.08001 * 120.07960 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47518 * 299.99706 * 26 25 23 44 44 H 1.08997 * 109.47423 * 60.00462 * 26 25 23 45 45 H 1.09008 * 109.46913 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2873 3.4694 -1.1875 7 1 4.0121 4.5077 -1.2994 8 6 4.8734 2.7878 -2.2471 9 7 4.7365 3.2381 -3.4741 10 14 5.8559 1.2316 -1.9275 11 1 4.9675 0.0491 -2.0608 12 1 6.9620 1.1332 -2.9134 13 1 6.4192 1.2751 -0.5542 14 6 4.2825 3.4597 1.1670 15 8 4.1634 2.8623 2.2159 16 6 4.6811 4.9130 1.1687 17 6 4.7408 5.4159 2.5880 18 6 5.9567 5.5337 3.2292 19 6 6.0134 5.9957 4.5320 20 6 4.8526 6.3419 5.2012 21 6 3.6302 6.2277 4.5727 22 6 3.5664 5.7691 3.2552 23 6 2.2614 5.6508 2.5731 24 8 2.1967 5.1502 1.4682 25 8 1.1431 6.0981 3.1764 26 6 -0.1037 5.9498 2.4471 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.9337 0.9284 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 5.1453 2.7621 -4.2138 37 1 5.6606 5.0216 0.7031 38 1 3.9466 5.4918 0.6087 39 1 6.8664 5.2654 2.7126 40 1 6.9679 6.0864 5.0292 41 1 4.9039 6.7015 6.2183 42 1 2.7250 6.4978 5.0962 43 1 -0.0409 6.4951 1.5054 44 1 -0.2827 4.8939 2.2444 45 1 -0.9237 6.3488 3.0444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181217195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:13 Heat of formation + Delta-G solvation = -91.580897 kcal Electronic energy + Delta-G solvation = -28050.033726 eV Core-core repulsion = 24225.998187 eV Total energy + Delta-G solvation = -3824.035539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.48545 -38.97527 -38.23294 -36.16032 -35.42454 -33.90923 -32.30983 -31.78676 -31.32618 -28.93894 -27.73102 -26.81543 -24.68128 -23.77174 -23.12939 -21.63593 -20.70688 -20.45331 -18.89516 -17.69923 -16.94305 -16.53670 -16.28260 -15.94545 -15.58725 -15.20914 -14.93027 -14.70470 -14.40976 -13.99662 -13.78139 -13.33812 -13.20594 -13.06666 -12.82841 -12.64070 -12.56364 -12.22444 -12.11810 -11.97750 -11.62994 -11.55563 -11.40550 -11.26890 -11.02106 -10.78898 -10.61189 -10.53449 -10.51150 -10.30573 -9.97009 -9.72479 -9.67695 -9.09706 -8.83519 -8.74112 -8.33612 -7.62903 -6.40759 -4.00663 0.95679 1.54187 2.85073 2.91567 3.09443 3.24829 3.34006 3.90570 3.94205 4.19295 4.54890 4.88001 4.98688 5.04699 5.08145 5.17691 5.24019 5.32715 5.41978 5.46019 5.48126 5.57397 5.58865 5.66794 5.89124 5.89967 6.03947 6.17220 6.17941 6.20151 6.26031 6.31491 6.35294 6.38225 6.46201 6.52932 6.53846 6.57143 6.63958 6.88460 6.89941 7.03005 7.06147 7.50054 8.08395 8.19959 8.36492 9.05384 9.47122 9.82659 10.70330 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.005386 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.098514 B = 5197.510225 C = 6463.370748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.122 4.122 4 C 0.104 3.896 5 N -0.464 5.464 6 C -0.336 4.336 7 H 0.103 0.897 8 C 0.067 3.933 9 N -0.863 5.863 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.263 1.263 14 C 0.511 3.489 15 O -0.601 6.601 16 C -0.097 4.097 17 C 0.019 3.981 18 C -0.125 4.125 19 C -0.085 4.085 20 C -0.147 4.147 21 C -0.065 4.065 22 C -0.115 4.115 23 C 0.499 3.501 24 O -0.474 6.474 25 O -0.363 6.363 26 C 0.039 3.961 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.273 0.727 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 4.728 12.148 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.019 4.019 5 N -0.184 5.184 6 C -0.463 4.463 7 H 0.120 0.880 8 C -0.140 4.140 9 N -0.499 5.499 10 Si 0.701 3.299 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.187 1.187 14 C 0.300 3.700 15 O -0.487 6.487 16 C -0.136 4.136 17 C 0.018 3.982 18 C -0.143 4.143 19 C -0.103 4.103 20 C -0.165 4.165 21 C -0.083 4.083 22 C -0.116 4.116 23 C 0.343 3.657 24 O -0.361 6.361 25 O -0.281 6.281 26 C -0.055 4.055 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.875 4.258 12.068 13.371 hybrid contribution 0.335 -0.883 -0.345 1.005 sum -3.540 3.375 11.723 12.703 Atomic orbital electron populations 1.21728 0.96266 1.00739 1.01673 1.21492 0.95512 0.97708 1.01456 1.21806 0.96178 0.95527 1.02518 1.21594 0.93924 0.85561 1.00833 1.43560 1.57566 1.11634 1.05615 1.19067 1.40621 0.98718 0.87923 0.87996 1.25344 0.96004 0.97853 0.94755 1.69765 1.41079 1.40665 0.98405 0.87004 0.80417 0.83393 0.79057 1.20102 1.21607 1.18675 1.19834 0.78689 0.87940 0.83494 1.90527 1.57556 1.68577 1.32008 1.20714 1.04657 0.96259 0.91980 1.19774 0.91463 0.91241 0.95731 1.21024 0.97298 1.00805 0.95155 1.21328 0.98453 0.96190 0.94353 1.21014 0.92276 1.02954 1.00207 1.21332 0.98479 0.95525 0.93009 1.18878 0.89877 1.07469 0.95349 1.21264 0.84606 0.75483 0.84369 1.90942 1.86349 1.39245 1.19533 1.86496 1.16495 1.76111 1.48956 1.23201 0.82419 1.02747 0.97152 0.93350 0.93070 0.92776 0.92325 0.92449 0.92273 0.91275 0.91889 0.91680 0.91665 0.88761 0.86643 0.85155 0.85704 0.85664 0.84976 0.91850 0.91893 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.11 5.93 -26.73 -0.16 -2.27 16 3 C -0.12 -2.55 5.54 -26.73 -0.15 -2.70 16 4 C 0.10 2.44 4.24 -4.04 -0.02 2.43 16 5 N -0.46 -11.72 2.13 -114.81 -0.24 -11.96 16 6 C -0.34 -9.00 9.07 -14.93 -0.14 -9.14 16 7 H 0.10 2.89 7.18 -52.49 -0.38 2.51 16 8 C 0.07 1.81 5.32 -17.46 -0.09 1.71 16 9 N -0.86 -24.18 13.96 55.50 0.77 -23.41 16 10 Si 0.87 21.03 25.15 -169.99 -4.27 16.76 16 11 H -0.27 -6.37 6.59 56.52 0.37 -6.00 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.51 12.48 6.09 -10.99 -0.07 12.41 16 15 O -0.60 -15.68 15.58 5.55 0.09 -15.59 16 16 C -0.10 -2.03 3.86 -29.04 -0.11 -2.15 16 17 C 0.02 0.34 4.43 -104.21 -0.46 -0.12 16 18 C -0.12 -1.91 9.66 -39.64 -0.38 -2.30 16 19 C -0.09 -1.07 10.04 -39.48 -0.40 -1.46 16 20 C -0.15 -1.76 10.03 -39.64 -0.40 -2.16 16 21 C -0.07 -0.91 9.62 -39.17 -0.38 -1.29 16 22 C -0.11 -1.99 5.84 -104.98 -0.61 -2.61 16 23 C 0.50 9.17 7.82 34.61 0.27 9.44 16 24 O -0.47 -10.15 12.04 -19.25 -0.23 -10.38 16 25 O -0.36 -5.55 9.84 -40.52 -0.40 -5.95 16 26 C 0.04 0.47 10.56 101.05 1.07 1.54 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.06 1.50 3.43 -51.93 -0.18 1.33 16 35 H 0.06 1.53 7.36 -51.93 -0.38 1.15 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.09 1.86 8.00 -51.93 -0.42 1.44 16 38 H 0.12 2.52 5.53 -51.93 -0.29 2.24 16 39 H 0.13 1.80 8.03 -52.49 -0.42 1.38 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.56 7.63 -52.49 -0.40 1.16 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -32.31 370.45 -7.06 -39.37 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.70 Total: 5.99 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.65 Total: -0.41 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.53 Total: -35.37 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.54 Total: -31.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.27 Total: 16.76 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.31 -7.06 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181217195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.210 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds