Wall clock time and date at job start Tue Mar 31 2020 12:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00055 * 2 1 4 4 O 1.20829 * 119.99904 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00368 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47246 * 59.99600 * 5 3 2 7 7 C 1.53003 * 109.46770 * 300.00041 * 5 3 2 8 8 C 1.53001 * 109.47379 * 180.02562 * 5 3 2 9 9 C 1.50697 * 109.47014 * 180.02562 * 8 5 3 10 10 O 1.21290 * 120.00069 * 358.41457 * 9 8 5 11 11 N 1.34779 * 119.99839 * 178.42039 * 9 8 5 12 12 C 1.37098 * 119.99918 * 5.03647 * 11 9 8 13 13 H 1.07997 * 120.00422 * 38.65066 * 12 11 9 14 14 C 1.38950 * 119.99933 * 218.65272 * 12 11 9 15 15 N 1.31412 * 119.99686 * 19.19441 * 14 12 11 16 16 Si 1.86797 * 120.00096 * 199.19774 * 14 12 11 17 17 H 1.48499 * 109.47085 * 60.00210 * 16 14 12 18 18 H 1.48501 * 109.46980 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47153 * 300.00016 * 16 14 12 20 20 C 1.46504 * 119.99802 * 185.03442 * 11 9 8 21 21 C 1.50698 * 109.47042 * 269.99855 * 20 11 9 22 22 C 1.38236 * 120.00174 * 90.00500 * 21 20 11 23 23 C 1.38234 * 120.00246 * 179.97438 * 22 21 20 24 24 C 1.38229 * 119.99772 * 359.97438 * 23 22 21 25 25 C 1.38231 * 120.00441 * 0.27753 * 24 23 22 26 26 C 1.38230 * 119.99919 * 269.97832 * 21 20 11 27 27 H 1.09007 * 109.46793 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46804 * 299.99708 * 1 2 3 29 29 H 1.09002 * 109.46985 * 60.00336 * 1 2 3 30 30 H 1.08995 * 109.47260 * 179.97438 * 6 5 3 31 31 H 1.08993 * 109.47205 * 300.00809 * 6 5 3 32 32 H 1.09003 * 109.46551 * 60.00353 * 6 5 3 33 33 H 1.08993 * 109.47595 * 299.99567 * 7 5 3 34 34 H 1.09001 * 109.47446 * 60.00327 * 7 5 3 35 35 H 1.09008 * 109.46962 * 180.02562 * 7 5 3 36 36 H 1.08999 * 109.46896 * 60.00018 * 8 5 3 37 37 H 1.09001 * 109.46643 * 299.99912 * 8 5 3 38 38 H 0.97001 * 119.99735 * 174.97879 * 15 14 12 39 39 H 1.09001 * 109.46842 * 150.00097 * 20 11 9 40 40 H 1.08997 * 109.47140 * 30.00210 * 20 11 9 41 41 H 1.08003 * 119.99795 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99782 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00131 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00323 * 179.72776 * 25 24 23 45 45 H 1.07998 * 120.00706 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1130 0.5815 -1.2501 7 6 4.1138 0.5811 1.2483 8 6 4.0001 2.7422 0.0002 9 6 5.5050 2.8210 -0.0010 10 8 6.1656 1.8042 0.0267 11 7 6.1169 4.0215 -0.0328 12 6 5.3742 5.1716 0.0403 13 1 4.5157 5.2194 0.6937 14 6 5.7260 6.2757 -0.7265 15 7 6.5035 6.1264 -1.7753 16 14 5.0938 7.9721 -0.2663 17 1 5.5606 8.3206 1.0997 18 1 5.6098 8.9722 -1.2353 19 1 3.6092 7.9723 -0.2972 20 6 7.5756 4.0974 -0.1453 21 6 8.1860 4.1047 1.2325 22 6 8.5267 2.9127 1.8439 23 6 9.0871 2.9194 3.1075 24 6 9.3073 4.1183 3.7595 25 6 8.9619 5.3100 3.1503 26 6 8.4058 5.3035 1.8847 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 5.2014 0.6390 -1.2508 31 1 3.8039 -0.4636 -1.2503 32 1 3.7229 1.0759 -2.1399 33 1 3.7245 1.0750 2.1386 34 1 3.8049 -0.4642 1.2482 35 1 5.2024 0.6386 1.2482 36 1 3.6108 3.2356 0.8907 37 1 3.6100 3.2368 -0.8894 38 1 6.6901 6.8834 -2.3524 39 1 7.8524 5.0117 -0.6702 40 1 7.9426 3.2343 -0.7008 41 1 8.3550 1.9760 1.3343 42 1 9.3529 1.9880 3.5854 43 1 9.7448 4.1236 4.7469 44 1 9.1299 6.2464 3.6615 45 1 8.1397 6.2349 1.4071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182535196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:43 Heat of formation + Delta-G solvation = -95.550499 kcal Electronic energy + Delta-G solvation = -27882.689919 eV Core-core repulsion = 24058.482245 eV Total energy + Delta-G solvation = -3824.207674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53855 -39.16558 -38.19795 -36.38878 -35.52069 -34.23176 -31.89134 -30.89775 -30.26371 -28.11938 -27.32826 -26.87431 -25.68409 -24.28965 -23.14349 -21.89829 -20.82921 -19.70831 -18.92164 -17.08228 -16.81244 -16.50671 -16.16006 -15.97900 -15.37721 -14.89262 -14.54394 -14.37591 -14.22667 -14.15323 -13.54880 -13.54544 -13.29084 -12.79627 -12.70930 -12.48753 -12.32092 -12.16997 -12.01517 -11.65775 -11.54538 -11.33716 -11.25675 -11.05265 -10.90340 -10.68838 -10.61816 -10.54531 -10.44930 -10.36218 -10.27782 -10.12840 -9.93084 -9.16528 -8.45959 -8.31194 -8.02686 -7.54784 -6.44769 -4.14748 1.95481 2.01625 2.49141 2.90358 3.09770 3.17739 3.20697 3.82659 4.05491 4.34741 4.84840 4.89380 4.96385 5.12961 5.18447 5.32165 5.34910 5.43695 5.48262 5.49283 5.59410 5.63200 5.88571 6.09869 6.11777 6.13786 6.18174 6.23680 6.26013 6.37193 6.45622 6.47325 6.53654 6.63047 6.68496 6.76761 6.86321 6.91904 7.05302 7.07201 7.15389 7.40965 7.48046 7.64166 7.89332 8.00577 8.31080 9.01700 9.42149 9.85891 10.57365 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.004903 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.049652 B = 5709.876985 C = 7289.642452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.507 6.507 5 C -0.031 4.031 6 C -0.147 4.147 7 C -0.149 4.149 8 C -0.099 4.099 9 C 0.480 3.520 10 O -0.596 6.596 11 N -0.427 5.427 12 C -0.338 4.338 13 H 0.088 0.912 14 C 0.049 3.951 15 N -0.860 5.860 16 Si 0.910 3.090 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.145 3.855 21 C -0.077 4.077 22 C -0.102 4.102 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.097 4.097 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.272 0.728 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -6.864 4.572 8.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.394 6.394 5 C -0.033 4.033 6 C -0.204 4.204 7 C -0.206 4.206 8 C -0.139 4.139 9 C 0.270 3.730 10 O -0.484 6.484 11 N -0.144 5.144 12 C -0.466 4.466 13 H 0.106 0.894 14 C -0.157 4.157 15 N -0.496 5.496 16 Si 0.736 3.264 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.022 3.978 21 C -0.078 4.078 22 C -0.121 4.121 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.151 4.151 26 C -0.116 4.116 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.045 -6.884 4.432 8.439 hybrid contribution -0.888 1.239 0.258 1.546 sum -2.933 -5.646 4.689 7.903 Atomic orbital electron populations 1.23204 0.77328 1.03187 1.02339 1.86532 1.22610 1.33999 1.84292 1.24216 0.92333 0.80930 0.71390 1.90649 1.67245 1.36341 1.45197 1.20265 0.84665 0.98335 0.99997 1.22063 1.05404 0.98909 0.93978 1.22113 1.05697 0.98903 0.93849 1.21248 0.95052 0.92678 1.04925 1.20125 0.89138 0.83575 0.80203 1.90351 1.66928 1.34477 1.56598 1.43330 1.03953 1.04497 1.62573 1.19386 1.12697 0.89581 1.24931 0.89393 1.25362 0.96330 1.00125 0.93921 1.69801 1.35793 1.32273 1.11739 0.86255 0.79601 0.81813 0.78732 1.19588 1.20795 1.19552 1.20453 0.81643 1.04576 0.91100 1.20611 0.96264 0.92563 0.98376 1.21278 0.97465 0.98513 0.94818 1.21048 1.01024 0.97359 0.95711 1.20960 1.01979 0.92943 0.99472 1.21047 1.00730 0.97526 0.95802 1.21125 0.97618 0.98306 0.94553 0.88471 0.92185 0.92127 0.87589 0.92585 0.93316 0.93601 0.92614 0.87283 0.89790 0.88807 0.91717 0.86885 0.91718 0.85581 0.87053 0.87217 0.87027 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.29 10.37 -39.25 -0.41 -5.70 16 3 C 0.47 8.12 6.55 36.00 0.24 8.36 16 4 O -0.51 -10.00 15.73 -18.75 -0.29 -10.29 16 5 C -0.03 -0.55 0.71 -155.66 -0.11 -0.66 16 6 C -0.15 -2.45 8.11 37.16 0.30 -2.14 16 7 C -0.15 -2.44 8.11 37.16 0.30 -2.14 16 8 C -0.10 -2.02 2.81 -27.88 -0.08 -2.09 16 9 C 0.48 10.68 7.03 -10.99 -0.08 10.60 16 10 O -0.60 -13.15 10.18 5.55 0.06 -13.09 16 11 N -0.43 -10.07 2.50 -116.10 -0.29 -10.36 16 12 C -0.34 -8.25 8.55 -14.93 -0.13 -8.38 16 13 H 0.09 2.14 7.18 -52.49 -0.38 1.76 16 14 C 0.05 1.19 5.00 -17.47 -0.09 1.10 16 15 N -0.86 -21.58 11.40 55.50 0.63 -20.95 16 16 Si 0.91 19.10 29.60 -169.99 -5.03 14.07 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 C 0.15 3.28 5.09 -5.19 -0.03 3.26 16 21 C -0.08 -1.57 5.46 -104.63 -0.57 -2.14 16 22 C -0.10 -1.93 9.57 -39.58 -0.38 -2.31 16 23 C -0.13 -2.20 10.05 -39.59 -0.40 -2.59 16 24 C -0.14 -2.12 10.05 -39.59 -0.40 -2.52 16 25 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 26 C -0.10 -1.89 9.70 -39.58 -0.38 -2.27 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 30 H 0.11 1.96 5.57 -51.93 -0.29 1.67 16 31 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.11 1.98 5.46 -51.92 -0.28 1.70 16 36 H 0.08 1.73 7.60 -51.93 -0.39 1.34 16 37 H 0.09 2.03 8.07 -51.93 -0.42 1.61 16 38 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 39 H 0.11 2.73 5.46 -51.93 -0.28 2.44 16 40 H 0.06 1.48 7.44 -51.93 -0.39 1.09 16 41 H 0.13 2.43 7.38 -52.48 -0.39 2.04 16 42 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -27.13 370.11 -7.49 -34.62 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.60 Total: 11.26 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.13 Total: -5.13 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.34 Total: -31.31 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.65 Total: -29.08 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.13 -7.49 -34.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182535196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.935 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds