Wall clock time and date at job start Tue Mar 31 2020 12:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00055 * 2 1 4 4 O 1.20829 * 119.99904 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00368 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47246 * 59.99600 * 5 3 2 7 7 C 1.53003 * 109.46770 * 300.00041 * 5 3 2 8 8 C 1.53001 * 109.47379 * 180.02562 * 5 3 2 9 9 C 1.50697 * 109.47014 * 180.02562 * 8 5 3 10 10 O 1.21290 * 120.00069 * 358.41457 * 9 8 5 11 11 N 1.34779 * 119.99839 * 178.42039 * 9 8 5 12 12 C 1.37098 * 119.99918 * 5.03647 * 11 9 8 13 13 H 1.07997 * 120.00422 * 38.65066 * 12 11 9 14 14 C 1.38950 * 119.99933 * 218.65272 * 12 11 9 15 15 N 1.31412 * 119.99686 * 19.19441 * 14 12 11 16 16 Si 1.86797 * 120.00096 * 199.19774 * 14 12 11 17 17 H 1.48499 * 109.47085 * 60.00210 * 16 14 12 18 18 H 1.48501 * 109.46980 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47153 * 300.00016 * 16 14 12 20 20 C 1.46504 * 119.99802 * 185.03442 * 11 9 8 21 21 C 1.50698 * 109.47042 * 269.99855 * 20 11 9 22 22 C 1.38236 * 120.00174 * 90.00500 * 21 20 11 23 23 C 1.38234 * 120.00246 * 179.97438 * 22 21 20 24 24 C 1.38229 * 119.99772 * 359.97438 * 23 22 21 25 25 C 1.38231 * 120.00441 * 0.27753 * 24 23 22 26 26 C 1.38230 * 119.99919 * 269.97832 * 21 20 11 27 27 H 1.09007 * 109.46793 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46804 * 299.99708 * 1 2 3 29 29 H 1.09002 * 109.46985 * 60.00336 * 1 2 3 30 30 H 1.08995 * 109.47260 * 179.97438 * 6 5 3 31 31 H 1.08993 * 109.47205 * 300.00809 * 6 5 3 32 32 H 1.09003 * 109.46551 * 60.00353 * 6 5 3 33 33 H 1.08993 * 109.47595 * 299.99567 * 7 5 3 34 34 H 1.09001 * 109.47446 * 60.00327 * 7 5 3 35 35 H 1.09008 * 109.46962 * 180.02562 * 7 5 3 36 36 H 1.08999 * 109.46896 * 60.00018 * 8 5 3 37 37 H 1.09001 * 109.46643 * 299.99912 * 8 5 3 38 38 H 0.97001 * 119.99735 * 174.97879 * 15 14 12 39 39 H 1.09001 * 109.46842 * 150.00097 * 20 11 9 40 40 H 1.08997 * 109.47140 * 30.00210 * 20 11 9 41 41 H 1.08003 * 119.99795 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99782 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00131 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00323 * 179.72776 * 25 24 23 45 45 H 1.07998 * 120.00706 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1130 0.5815 -1.2501 7 6 4.1138 0.5811 1.2483 8 6 4.0001 2.7422 0.0002 9 6 5.5050 2.8210 -0.0010 10 8 6.1656 1.8042 0.0267 11 7 6.1169 4.0215 -0.0328 12 6 5.3742 5.1716 0.0403 13 1 4.5157 5.2194 0.6937 14 6 5.7260 6.2757 -0.7265 15 7 6.5035 6.1264 -1.7753 16 14 5.0938 7.9721 -0.2663 17 1 5.5606 8.3206 1.0997 18 1 5.6098 8.9722 -1.2353 19 1 3.6092 7.9723 -0.2972 20 6 7.5756 4.0974 -0.1453 21 6 8.1860 4.1047 1.2325 22 6 8.5267 2.9127 1.8439 23 6 9.0871 2.9194 3.1075 24 6 9.3073 4.1183 3.7595 25 6 8.9619 5.3100 3.1503 26 6 8.4058 5.3035 1.8847 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 5.2014 0.6390 -1.2508 31 1 3.8039 -0.4636 -1.2503 32 1 3.7229 1.0759 -2.1399 33 1 3.7245 1.0750 2.1386 34 1 3.8049 -0.4642 1.2482 35 1 5.2024 0.6386 1.2482 36 1 3.6108 3.2356 0.8907 37 1 3.6100 3.2368 -0.8894 38 1 6.6901 6.8834 -2.3524 39 1 7.8524 5.0117 -0.6702 40 1 7.9426 3.2343 -0.7008 41 1 8.3550 1.9760 1.3343 42 1 9.3529 1.9880 3.5854 43 1 9.7448 4.1236 4.7469 44 1 9.1299 6.2464 3.6615 45 1 8.1397 6.2349 1.4071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182535196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:43 Heat of formation + Delta-G solvation = -107.215182 kcal Electronic energy + Delta-G solvation = -27883.195738 eV Core-core repulsion = 24058.482245 eV Total energy + Delta-G solvation = -3824.713492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93110 -40.77237 -39.66435 -37.71807 -37.12922 -35.87287 -33.67094 -32.49614 -31.65035 -29.51494 -28.50665 -28.23280 -27.44693 -26.00398 -24.49560 -23.29608 -22.28010 -21.24501 -20.57802 -18.57368 -18.38975 -18.02090 -17.42272 -17.39893 -17.00423 -16.54758 -16.12336 -16.01277 -15.69506 -15.64228 -14.97483 -14.89786 -14.71939 -14.18100 -14.11260 -13.96606 -13.75402 -13.52579 -13.46603 -13.19177 -13.02278 -12.89469 -12.77859 -12.61052 -12.53847 -12.24582 -12.15321 -11.96602 -11.85969 -11.81208 -11.76551 -11.68902 -11.37090 -10.97898 -10.15265 -9.70321 -9.50810 -9.38747 -8.30882 -6.06377 0.55203 0.61861 1.12286 1.39742 1.44878 1.52201 1.67365 2.04799 2.30653 2.84871 3.06487 3.27940 3.54400 3.87625 3.94543 4.09372 4.17291 4.18049 4.27322 4.32617 4.32755 4.41181 4.45237 4.65133 4.67945 4.70291 4.76754 4.78840 4.84546 4.91642 4.95065 4.97116 5.09191 5.20549 5.26605 5.28032 5.33923 5.45617 5.46873 5.53373 5.68693 5.70054 5.95023 6.08361 6.25704 6.42910 6.68963 7.13947 7.60588 8.03604 8.71267 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.004903 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.049652 B = 5709.876985 C = 7289.642452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.476 3.524 4 O -0.537 6.537 5 C -0.032 4.032 6 C -0.139 4.139 7 C -0.140 4.140 8 C -0.090 4.090 9 C 0.474 3.526 10 O -0.596 6.596 11 N -0.440 5.440 12 C -0.350 4.350 13 H 0.083 0.917 14 C 0.015 3.985 15 N -0.887 5.887 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.270 1.270 20 C 0.153 3.847 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.117 4.117 27 H 0.137 0.863 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.274 0.726 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -7.764 6.760 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.320 3.680 4 O -0.426 6.426 5 C -0.034 4.034 6 C -0.196 4.196 7 C -0.197 4.197 8 C -0.130 4.130 9 C 0.264 3.736 10 O -0.483 6.483 11 N -0.157 5.157 12 C -0.478 4.478 13 H 0.101 0.899 14 C -0.189 4.189 15 N -0.524 5.524 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.195 1.195 20 C 0.030 3.970 21 C -0.100 4.100 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.136 4.136 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.345 -7.819 6.623 10.512 hybrid contribution -0.796 1.408 -0.400 1.666 sum -3.141 -6.412 6.224 9.471 Atomic orbital electron populations 1.23596 0.74901 1.05883 1.02426 1.86500 1.24863 1.32111 1.83534 1.23950 0.91964 0.81316 0.70762 1.90640 1.67766 1.37483 1.46753 1.20211 0.85614 0.96441 1.01120 1.21966 1.03903 1.00358 0.93380 1.22006 1.04277 1.00244 0.93148 1.21118 0.93504 0.94828 1.03547 1.20472 0.90012 0.83331 0.79816 1.90350 1.67274 1.34335 1.56368 1.43511 1.04380 1.04752 1.63099 1.19489 1.12936 0.90292 1.25043 0.89889 1.26014 0.96451 1.02845 0.93565 1.69899 1.36873 1.33073 1.12572 0.85382 0.78885 0.78023 0.78601 1.18974 1.20433 1.19522 1.20243 0.81524 1.02589 0.92634 1.20439 0.98013 0.93935 0.97606 1.21243 0.98719 0.97306 0.96230 1.21399 0.99450 0.99330 0.94419 1.21419 1.00270 0.91820 1.00764 1.21378 0.99319 0.99545 0.94533 1.21111 0.99210 0.97179 0.96092 0.84469 0.92058 0.92199 0.89603 0.89954 0.93712 0.93444 0.90126 0.89143 0.90528 0.90701 0.91664 0.88906 0.93354 0.86797 0.83943 0.83095 0.84167 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -9.70 10.37 -51.40 -0.53 -10.23 16 3 C 0.48 16.13 6.55 71.24 0.47 16.60 16 4 O -0.54 -21.14 15.73 21.96 0.35 -20.79 16 5 C -0.03 -1.13 0.71 -52.93 -0.04 -1.17 16 6 C -0.14 -4.61 8.11 71.98 0.58 -4.02 16 7 C -0.14 -4.46 8.11 71.98 0.58 -3.88 16 8 C -0.09 -3.79 2.81 29.85 0.08 -3.71 16 9 C 0.47 21.98 7.03 87.66 0.62 22.59 16 10 O -0.60 -27.26 10.18 -3.06 -0.03 -27.30 16 11 N -0.44 -21.78 2.50 -639.60 -1.60 -23.38 16 12 C -0.35 -17.77 8.55 84.04 0.72 -17.05 16 13 H 0.08 4.20 7.18 -2.91 -0.02 4.18 16 14 C 0.02 0.76 5.00 84.93 0.42 1.18 16 15 N -0.89 -46.34 11.40 21.66 0.25 -46.09 16 16 Si 0.97 39.88 29.60 68.60 2.03 41.91 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 C 0.15 7.33 5.09 85.63 0.44 7.77 16 21 C -0.10 -4.17 5.46 -19.87 -0.11 -4.28 16 22 C -0.12 -4.41 9.57 22.27 0.21 -4.20 16 23 C -0.13 -3.91 10.05 22.27 0.22 -3.68 16 24 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 25 C -0.13 -4.07 10.05 22.27 0.22 -3.84 16 26 C -0.12 -4.58 9.70 22.27 0.22 -4.37 16 27 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.09 3.22 5.57 -2.39 -0.01 3.21 16 31 H 0.08 2.26 8.11 -2.39 -0.02 2.24 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 2.15 8.11 -2.39 -0.02 2.13 16 35 H 0.09 3.27 5.46 -2.38 -0.01 3.26 16 36 H 0.08 3.29 7.60 -2.39 -0.02 3.27 16 37 H 0.07 3.40 8.07 -2.39 -0.02 3.38 16 38 H 0.27 13.54 8.32 -92.71 -0.77 12.77 16 39 H 0.09 4.78 5.46 -2.39 -0.01 4.77 16 40 H 0.05 2.37 7.44 -2.39 -0.02 2.35 16 41 H 0.11 4.51 7.38 -2.91 -0.02 4.49 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -60.73 370.11 7.51 -53.22 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.98 Total: 36.26 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 6.06 Total: -3.60 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -1.35 Total: -69.47 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: -0.22 Total: -58.32 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -60.73 7.51 -53.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182535196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.993 kcal (2) G-P(sol) polarization free energy of solvation -60.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds