Wall clock time and date at job start Tue Mar 31 2020 13:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47555 * 2 1 4 4 C 1.52996 * 109.47268 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.36879 * 119.99784 * 70.18467 * 5 4 3 7 7 H 1.08000 * 120.00204 * 27.31918 * 6 5 4 8 8 C 1.39048 * 119.99527 * 207.31884 * 6 5 4 9 9 N 1.31359 * 120.00631 * 56.05488 * 8 6 5 10 10 Si 1.86808 * 119.99726 * 236.04840 * 8 6 5 11 11 H 1.48506 * 109.46972 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47026 * 120.00477 * 10 8 6 13 13 H 1.48498 * 109.47007 * 240.00657 * 10 8 6 14 14 C 1.34779 * 120.00152 * 250.18321 * 5 4 3 15 15 O 1.21593 * 119.99585 * 186.75141 * 14 5 4 16 16 C 1.47733 * 119.99896 * 6.75594 * 14 5 4 17 17 C 1.39678 * 120.12361 * 205.09870 * 16 14 5 18 18 C 1.37941 * 119.96263 * 180.02562 * 17 16 14 19 19 C 1.38309 * 120.20909 * 359.73202 * 18 17 16 20 20 C 1.38832 * 120.24982 * 0.54329 * 19 18 17 21 21 O 1.35928 * 119.98121 * 179.73157 * 20 19 18 22 22 C 1.34266 * 116.99962 * 262.15515 * 21 20 19 23 23 O 1.20826 * 119.99693 * 355.24897 * 22 21 20 24 24 C 1.50695 * 120.00045 * 175.23965 * 22 21 20 25 25 C 1.53000 * 109.47197 * 179.97438 * 24 22 21 26 26 C 1.38470 * 120.03426 * 359.45242 * 20 19 18 27 27 H 1.09000 * 109.47105 * 300.00398 * 1 2 3 28 28 H 1.08998 * 109.46515 * 59.99929 * 1 2 3 29 29 H 1.08990 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47105 * 239.99602 * 2 1 3 31 31 H 1.09010 * 109.46913 * 119.99973 * 2 1 3 32 32 H 1.09003 * 109.46890 * 59.99284 * 3 2 1 33 33 H 1.09000 * 109.46922 * 300.00015 * 3 2 1 34 34 H 1.09000 * 109.46973 * 59.99859 * 4 3 2 35 35 H 1.09000 * 109.47437 * 300.00037 * 4 3 2 36 36 H 0.97000 * 120.00415 * 184.90794 * 9 8 6 37 37 H 1.08001 * 120.01884 * 359.97438 * 17 16 14 38 38 H 1.07995 * 119.89555 * 180.02562 * 18 17 16 39 39 H 1.07999 * 119.87505 * 180.27626 * 19 18 17 40 40 H 1.09003 * 109.46894 * 60.00580 * 24 22 21 41 41 H 1.08994 * 109.47635 * 300.00517 * 24 22 21 42 42 H 1.09003 * 109.47336 * 300.00958 * 25 24 22 43 43 H 1.09003 * 109.46882 * 60.00002 * 25 24 22 44 44 H 1.08993 * 109.47501 * 180.02562 * 25 24 22 45 45 H 1.08006 * 120.10061 * 180.25042 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8235 0.0000 6 6 3.9073 3.6034 1.1147 7 1 3.8555 3.1452 2.0914 8 6 3.8205 4.9855 0.9896 9 7 2.8998 5.5188 0.2194 10 14 5.0133 6.0840 1.9172 11 1 5.9468 5.2433 2.7092 12 1 5.7858 6.9039 0.9496 13 1 4.2558 6.9778 2.8296 14 6 4.6567 3.3263 -1.0981 15 8 5.1709 4.4275 -1.0599 16 6 4.6876 2.5396 -2.3481 17 6 5.6933 2.7617 -3.2916 18 6 5.7186 2.0256 -4.4579 19 6 4.7538 1.0631 -4.6944 20 6 3.7469 0.8390 -3.7652 21 8 2.7984 -0.1045 -4.0058 22 6 1.6274 0.3220 -4.5054 23 8 1.4233 1.5052 -4.6403 24 6 0.5679 -0.6751 -4.8980 25 6 -0.6581 0.0676 -5.4331 26 6 3.7118 1.5720 -2.5910 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9338 0.9284 -0.8891 35 1 3.9331 0.9287 0.8908 36 1 2.8835 6.4780 0.0757 37 1 6.4502 3.5101 -3.1085 38 1 6.4969 2.1980 -5.1865 39 1 4.7814 0.4868 -5.6074 40 1 0.2832 -1.2648 -4.0266 41 1 0.9593 -1.3356 -5.6716 42 1 -1.0494 0.7279 -4.6592 43 1 -0.3737 0.6577 -6.3044 44 1 -1.4246 -0.6535 -5.7166 45 1 2.9313 1.3957 -1.8656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198079629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:08 Heat of formation + Delta-G solvation = -79.647527 kcal Electronic energy + Delta-G solvation = -28140.213489 eV Core-core repulsion = 24316.695420 eV Total energy + Delta-G solvation = -3823.518069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.44270 -41.07119 -39.21638 -37.80048 -37.38376 -35.27840 -34.14948 -33.93852 -32.20295 -31.27237 -29.82629 -27.25105 -26.50853 -25.05739 -23.83117 -23.73028 -22.21840 -21.97495 -21.04130 -19.47172 -18.70999 -18.12821 -17.95471 -17.65720 -17.09605 -16.85662 -16.32301 -16.14075 -15.87560 -15.34710 -15.15480 -14.76481 -14.55103 -14.53503 -14.35632 -13.93791 -13.82896 -13.49638 -13.43058 -13.28224 -12.95407 -12.90844 -12.71719 -12.65391 -12.64034 -12.37344 -12.16190 -12.09569 -12.07765 -12.01147 -11.72391 -11.58134 -11.51104 -10.80765 -10.28973 -9.90094 -9.83375 -9.62663 -8.64990 -5.79723 -0.15036 0.08114 1.08840 1.28426 1.44834 1.50242 1.69040 2.07495 2.29725 2.74956 2.94625 3.08274 3.55799 3.74253 3.81529 3.95991 4.03869 4.09219 4.12415 4.19287 4.21479 4.30008 4.35551 4.41455 4.53200 4.57224 4.74750 4.76610 4.82222 4.89308 4.95464 4.96567 4.99852 5.09248 5.14385 5.23299 5.28399 5.29509 5.34183 5.35609 5.40536 5.43087 5.53004 5.83041 5.93895 6.73935 6.76213 7.06559 7.48313 8.13223 8.37820 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.004978 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.393874 B = 5623.524355 C = 6802.326723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.119 4.119 4 C 0.071 3.929 5 N -0.427 5.427 6 C -0.421 4.421 7 H 0.094 0.906 8 C 0.097 3.903 9 N -0.806 5.806 10 Si 0.926 3.074 11 H -0.262 1.262 12 H -0.297 1.297 13 H -0.274 1.274 14 C 0.458 3.542 15 O -0.613 6.613 16 C -0.109 4.109 17 C -0.091 4.091 18 C -0.097 4.097 19 C -0.109 4.109 20 C 0.065 3.935 21 O -0.287 6.287 22 C 0.445 3.555 23 O -0.532 6.532 24 C -0.104 4.104 25 C -0.145 4.145 26 C -0.139 4.139 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.269 0.731 37 H 0.125 0.875 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.103 0.897 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 -18.940 -11.257 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.157 4.157 4 C -0.051 4.051 5 N -0.143 5.143 6 C -0.543 4.543 7 H 0.111 0.889 8 C -0.119 4.119 9 N -0.436 5.436 10 Si 0.750 3.250 11 H -0.185 1.185 12 H -0.224 1.224 13 H -0.200 1.200 14 C 0.250 3.750 15 O -0.501 6.501 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.127 4.127 20 C 0.024 3.976 21 O -0.202 6.202 22 C 0.291 3.709 23 O -0.419 6.419 24 C -0.141 4.141 25 C -0.202 4.202 26 C -0.158 4.158 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.192 0.808 39 H 0.185 0.815 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.527 -17.921 -11.227 21.626 hybrid contribution 0.552 1.669 0.729 1.903 sum -3.975 -16.252 -10.498 19.752 Atomic orbital electron populations 1.21734 0.94809 1.02632 1.01258 1.21500 0.96827 0.93960 1.03048 1.21801 0.94860 0.98311 1.00758 1.22526 0.94907 0.84386 1.03254 1.43652 1.47090 1.11376 1.12178 1.18887 1.59933 0.88851 0.86640 0.88883 1.25506 0.92676 0.98794 0.94969 1.70469 1.24641 1.13515 1.34976 0.86051 0.81996 0.78900 0.78096 1.18548 1.22368 1.19978 1.18376 0.83826 0.87723 0.85088 1.90491 1.52178 1.23474 1.83927 1.20101 0.97758 0.97272 0.96170 1.21441 0.97067 0.98938 0.93604 1.21317 0.99516 0.94249 0.96406 1.21628 0.94145 0.98043 0.98923 1.18482 0.91287 0.93432 0.94377 1.84627 1.23320 1.37283 1.74992 1.25537 0.82249 0.90603 0.72507 1.90750 1.79352 1.21124 1.50723 1.21628 0.90568 0.95991 1.05915 1.21698 0.96511 1.00982 1.01025 1.22368 1.00123 0.94845 0.98439 0.93339 0.93899 0.90006 0.91123 0.90299 0.92742 0.94918 0.88349 0.90923 0.92044 0.85727 0.80764 0.81471 0.84830 0.84006 0.93823 0.93051 0.87789 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.91 71.98 0.71 -2.72 16 2 C -0.12 -3.07 5.91 30.60 0.18 -2.89 16 3 C -0.12 -4.54 4.41 30.59 0.13 -4.41 16 4 C 0.07 2.95 4.86 86.38 0.42 3.36 16 5 N -0.43 -22.70 2.71 -638.94 -1.73 -24.43 16 6 C -0.42 -24.21 8.85 84.10 0.74 -23.47 16 7 H 0.09 5.15 8.06 -2.91 -0.02 5.12 16 8 C 0.10 5.76 3.11 84.96 0.26 6.03 16 9 N -0.81 -49.86 13.51 21.68 0.29 -49.57 16 10 Si 0.93 47.74 29.26 68.60 2.01 49.75 16 11 H -0.26 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.30 -16.25 7.11 99.48 0.71 -15.55 16 13 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.46 25.47 7.14 86.75 0.62 26.09 16 15 O -0.61 -38.75 14.22 -4.01 -0.06 -38.81 16 16 C -0.11 -4.97 5.52 -20.10 -0.11 -5.08 16 17 C -0.09 -3.49 9.59 22.55 0.22 -3.28 16 18 C -0.10 -2.71 10.03 22.22 0.22 -2.49 16 19 C -0.11 -2.92 9.98 22.43 0.22 -2.70 16 20 C 0.07 2.11 4.98 22.47 0.11 2.23 16 21 O -0.29 -7.68 10.02 4.48 0.04 -7.63 16 22 C 0.45 11.52 7.87 71.23 0.56 12.08 16 23 O -0.53 -19.20 15.64 21.96 0.34 -18.86 16 24 C -0.10 -1.38 6.53 29.85 0.19 -1.18 16 25 C -0.14 -2.11 9.20 71.98 0.66 -1.45 16 26 C -0.14 -5.52 7.24 22.64 0.16 -5.35 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.69 8.11 -2.39 -0.02 1.68 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.05 2.33 7.90 -2.39 -0.02 2.31 16 33 H 0.03 1.42 6.88 -2.39 -0.02 1.41 16 34 H 0.10 3.75 4.10 -2.39 -0.01 3.74 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.12 4.90 7.85 -2.91 -0.02 4.88 16 38 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.14 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 43 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.15 6.15 2.73 -2.91 -0.01 6.14 16 Total: -1.00 -82.82 373.22 7.21 -75.61 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.99 Total: 19.16 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.32 Total: -5.22 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -1.44 Total: -74.00 kcal Atomic # 8 Polarization: -65.63 SS G_CDS: 0.33 Total: -65.30 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.01 Total: 49.75 kcal Total: -82.82 7.21 -75.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198079629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.040 kcal (2) G-P(sol) polarization free energy of solvation -82.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds