Wall clock time and date at job start Tue Mar 31 2020 13:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34218 * 117.00209 * 2 1 4 4 O 1.20830 * 120.00334 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00071 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46721 * 60.00512 * 5 3 2 7 7 C 1.53000 * 109.47128 * 300.00249 * 5 3 2 8 8 C 1.53001 * 109.47346 * 180.02562 * 5 3 2 9 9 N 1.46492 * 109.47371 * 180.02562 * 8 5 3 10 10 C 1.34773 * 120.00500 * 179.97438 * 9 8 5 11 11 O 1.21288 * 119.99526 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00311 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47069 * 60.00192 * 12 10 9 14 14 C 1.50694 * 109.47553 * 300.00270 * 12 10 9 15 15 H 1.08005 * 119.99844 * 325.10155 * 14 12 10 16 16 C 1.37873 * 120.00327 * 144.82335 * 14 12 10 17 17 N 1.31518 * 120.00024 * 184.98561 * 16 14 12 18 18 Si 1.86799 * 119.99793 * 4.97779 * 16 14 12 19 19 H 1.48504 * 109.46890 * 84.67628 * 18 16 14 20 20 H 1.48507 * 109.47008 * 204.66985 * 18 16 14 21 21 H 1.48491 * 109.47579 * 324.67142 * 18 16 14 22 22 C 1.50706 * 109.47150 * 180.02562 * 12 10 9 23 23 C 1.38226 * 120.00081 * 65.01819 * 22 12 10 24 24 C 1.38241 * 120.00270 * 179.81142 * 23 22 12 25 25 C 1.38231 * 119.99498 * 0.39884 * 24 23 22 26 26 C 1.38234 * 120.00204 * 359.85390 * 25 24 23 27 27 C 1.38230 * 119.99898 * 359.95642 * 26 25 24 28 28 H 1.09000 * 109.47120 * 299.99805 * 1 2 3 29 29 H 1.09001 * 109.46996 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46942 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47259 * 299.99842 * 6 5 3 33 33 H 1.08999 * 109.47774 * 60.00070 * 6 5 3 34 34 H 1.08993 * 109.47411 * 300.00048 * 7 5 3 35 35 H 1.09000 * 109.46964 * 60.00089 * 7 5 3 36 36 H 1.08999 * 109.47243 * 179.97438 * 7 5 3 37 37 H 1.09001 * 109.47011 * 60.00039 * 8 5 3 38 38 H 1.09000 * 109.46942 * 300.00613 * 8 5 3 39 39 H 0.97005 * 120.00021 * 359.97438 * 9 8 5 40 40 H 0.97005 * 119.99741 * 179.97438 * 17 16 14 41 41 H 1.08005 * 119.99914 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99912 * 180.22965 * 24 23 22 43 43 H 1.07995 * 119.99951 * 179.83776 * 25 24 23 44 44 H 1.08001 * 120.00370 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.99890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1138 0.5810 -1.2484 7 6 4.1129 0.5813 1.2502 8 6 4.0003 2.7419 0.0011 9 7 5.4632 2.8185 0.0011 10 6 6.0752 4.0193 0.0009 11 8 5.4146 5.0365 0.0014 12 6 7.5801 4.0981 0.0015 13 1 7.9701 3.6038 -0.8883 14 6 8.1185 3.4153 1.2322 15 1 7.5714 3.4680 2.1620 16 6 9.3065 2.7184 1.1700 17 7 9.7272 2.0412 2.2160 18 14 10.3185 2.7360 -0.4001 19 1 11.1825 3.9437 -0.4185 20 1 11.1677 1.5190 -0.4552 21 1 9.4100 2.7593 -1.5744 22 6 8.0075 5.5433 0.0019 23 6 7.7183 6.3493 1.0870 24 6 8.1137 7.6739 1.0890 25 6 8.7911 8.1946 0.0024 26 6 9.0757 7.3899 -1.0850 27 6 8.6837 6.0644 -1.0854 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 5.2023 0.6376 -1.2478 32 1 3.8047 -0.4643 -1.2484 33 1 3.7245 1.0749 -2.1386 34 1 3.7229 1.0755 2.1399 35 1 3.8038 -0.4639 1.2502 36 1 5.2014 0.6379 1.2504 37 1 3.6102 3.2358 0.8911 38 1 3.6108 3.2363 -0.8889 39 1 5.9915 2.0050 0.0011 40 1 10.5629 1.5506 2.1721 41 1 7.1857 5.9434 1.9344 42 1 7.8910 8.3026 1.9385 43 1 9.0978 9.2301 0.0028 44 1 9.6046 7.7968 -1.9342 45 1 8.9057 5.4358 -1.9351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001416919469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:19 Heat of formation + Delta-G solvation = -107.431374 kcal Electronic energy + Delta-G solvation = -27255.532629 eV Core-core repulsion = 23430.809762 eV Total energy + Delta-G solvation = -3824.722867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88704 -39.35585 -38.07622 -36.90758 -36.07177 -33.65462 -32.58577 -31.49864 -30.11168 -28.18177 -27.83261 -27.43723 -26.12923 -23.80908 -23.05802 -21.83877 -21.02285 -19.60159 -19.42685 -17.39682 -17.15668 -16.88919 -16.51629 -16.15955 -15.85863 -15.17376 -14.85140 -14.51295 -14.27738 -14.04427 -13.84529 -13.62311 -13.45426 -13.03575 -12.90389 -12.68928 -12.62469 -12.44081 -12.28033 -12.10672 -12.01646 -11.87568 -11.72757 -11.19953 -11.10468 -11.00708 -10.95892 -10.95523 -10.45432 -10.34379 -10.22733 -9.92538 -9.53951 -9.00391 -8.70449 -8.43245 -8.11452 -7.79634 -6.32275 -4.36398 2.09485 2.17052 2.23457 2.49101 3.13089 3.21500 3.26820 3.59671 3.97662 4.20311 4.39309 4.64375 4.68992 4.69432 4.90033 4.95985 4.98183 4.99536 5.30285 5.54632 5.56873 5.59643 5.61757 5.70972 5.72201 5.78433 5.90674 5.95582 5.97428 6.02382 6.17514 6.23011 6.28303 6.31960 6.34334 6.47483 6.76062 6.87104 7.06315 7.18908 7.27200 7.27561 7.60537 7.61939 7.81784 8.17436 8.26918 8.68391 9.11074 9.25828 10.78490 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.003889 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.909957 B = 7198.002863 C = 8353.319878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.475 3.525 4 O -0.502 6.502 5 C -0.064 4.064 6 C -0.143 4.143 7 C -0.145 4.145 8 C 0.143 3.857 9 N -0.726 5.726 10 C 0.536 3.464 11 O -0.558 6.558 12 C 0.019 3.981 13 H 0.073 0.927 14 C -0.510 4.510 15 H 0.083 0.917 16 C 0.086 3.914 17 N -0.882 5.882 18 Si 0.865 3.135 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.027 4.027 23 C -0.072 4.072 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.137 4.137 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.405 0.595 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 -4.649 -5.871 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.388 6.388 5 C -0.066 4.066 6 C -0.201 4.201 7 C -0.202 4.202 8 C 0.018 3.982 9 N -0.380 5.380 10 C 0.325 3.675 11 O -0.436 6.436 12 C -0.003 4.003 13 H 0.091 0.909 14 C -0.548 4.548 15 H 0.101 0.899 16 C -0.119 4.119 17 N -0.518 5.518 18 Si 0.692 3.308 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.028 4.028 23 C -0.091 4.091 24 C -0.147 4.147 25 C -0.161 4.161 26 C -0.147 4.147 27 C -0.155 4.155 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.242 0.758 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.754 -3.759 -5.777 12.773 hybrid contribution 0.686 -0.361 -0.659 1.018 sum -10.068 -4.120 -6.436 12.639 Atomic orbital electron populations 1.23267 0.76533 1.03588 1.02578 1.86499 1.23170 1.33355 1.84083 1.23563 0.91508 0.81306 0.71917 1.90693 1.67038 1.36292 1.44782 1.20732 0.87102 0.98646 1.00095 1.21904 1.02591 1.00709 0.94855 1.21921 1.03214 1.00396 0.94655 1.20974 0.82203 0.91728 1.03254 1.45868 1.05276 1.09760 1.77121 1.21130 0.91202 0.82032 0.73170 1.90617 1.67688 1.34952 1.50345 1.18581 0.89048 0.91597 1.01029 0.90894 1.20535 1.07741 1.31610 0.94874 0.89910 1.24966 0.96767 0.93923 0.96221 1.69865 1.21984 1.30267 1.29676 0.87038 0.81152 0.78428 0.84192 1.19173 1.21139 1.18691 1.20061 0.94732 0.95522 0.92527 1.20844 0.97611 0.92662 0.97937 1.21035 0.99778 0.95819 0.98104 1.20858 1.01547 0.98961 0.94772 1.20878 1.01348 0.94206 0.98265 1.20968 1.01170 0.95305 0.98079 0.91885 0.91954 0.88121 0.90235 0.90933 0.91906 0.91749 0.91114 0.89584 0.91026 0.91223 0.75850 0.92120 0.86509 0.87130 0.87346 0.87285 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.96 10.37 -39.23 -0.41 -4.37 16 3 C 0.48 6.32 6.55 36.01 0.24 6.56 16 4 O -0.50 -8.08 15.73 -18.75 -0.30 -8.38 16 5 C -0.06 -0.81 0.72 -155.66 -0.11 -0.92 16 6 C -0.14 -1.52 8.23 37.16 0.31 -1.21 16 7 C -0.14 -1.72 8.23 37.16 0.31 -1.41 16 8 C 0.14 2.28 3.85 -4.05 -0.02 2.27 16 9 N -0.73 -12.77 4.86 -60.30 -0.29 -13.06 16 10 C 0.54 11.48 7.04 -10.99 -0.08 11.40 16 11 O -0.56 -13.35 15.37 5.55 0.09 -13.26 16 12 C 0.02 0.42 1.90 -94.08 -0.18 0.24 16 13 H 0.07 1.58 4.88 -51.93 -0.25 1.33 16 14 C -0.51 -12.69 8.06 -34.44 -0.28 -12.97 16 15 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 16 C 0.09 2.20 5.47 -17.82 -0.10 2.11 16 17 N -0.88 -24.17 13.96 55.43 0.77 -23.40 16 18 Si 0.86 19.40 27.23 -169.99 -4.63 14.77 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.26 -5.42 6.06 56.52 0.34 -5.08 16 22 C -0.03 -0.61 4.11 -104.62 -0.43 -1.04 16 23 C -0.07 -1.59 8.25 -39.58 -0.33 -1.91 16 24 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 25 C -0.14 -2.54 10.05 -39.59 -0.40 -2.93 16 26 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 27 C -0.14 -2.79 9.50 -39.59 -0.38 -3.17 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.83 6.86 -51.93 -0.36 0.48 16 32 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.09 1.09 6.86 -51.93 -0.36 0.73 16 37 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.40 6.57 6.05 -40.82 -0.25 6.32 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.12 2.65 7.93 -52.48 -0.42 2.23 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 2.02 7.95 -52.49 -0.42 1.61 16 LS Contribution 374.59 15.07 5.65 5.65 Total: -1.00 -31.14 374.59 -7.02 -38.16 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.73 Total: 11.16 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.17 Total: -7.26 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.48 Total: -36.46 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.62 Total: -26.01 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.63 Total: 14.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.14 -7.02 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001416919469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.275 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds