Wall clock time and date at job start Tue Mar 31 2020 13:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34218 * 117.00209 * 2 1 4 4 O 1.20830 * 120.00334 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00071 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46721 * 60.00512 * 5 3 2 7 7 C 1.53000 * 109.47128 * 300.00249 * 5 3 2 8 8 C 1.53001 * 109.47346 * 180.02562 * 5 3 2 9 9 N 1.46492 * 109.47371 * 180.02562 * 8 5 3 10 10 C 1.34773 * 120.00500 * 179.97438 * 9 8 5 11 11 O 1.21288 * 119.99526 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00311 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47069 * 60.00192 * 12 10 9 14 14 C 1.50694 * 109.47553 * 300.00270 * 12 10 9 15 15 H 1.08005 * 119.99844 * 325.10155 * 14 12 10 16 16 C 1.37873 * 120.00327 * 144.82335 * 14 12 10 17 17 N 1.31518 * 120.00024 * 184.98561 * 16 14 12 18 18 Si 1.86799 * 119.99793 * 4.97779 * 16 14 12 19 19 H 1.48504 * 109.46890 * 84.67628 * 18 16 14 20 20 H 1.48507 * 109.47008 * 204.66985 * 18 16 14 21 21 H 1.48491 * 109.47579 * 324.67142 * 18 16 14 22 22 C 1.50706 * 109.47150 * 180.02562 * 12 10 9 23 23 C 1.38226 * 120.00081 * 65.01819 * 22 12 10 24 24 C 1.38241 * 120.00270 * 179.81142 * 23 22 12 25 25 C 1.38231 * 119.99498 * 0.39884 * 24 23 22 26 26 C 1.38234 * 120.00204 * 359.85390 * 25 24 23 27 27 C 1.38230 * 119.99898 * 359.95642 * 26 25 24 28 28 H 1.09000 * 109.47120 * 299.99805 * 1 2 3 29 29 H 1.09001 * 109.46996 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46942 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47259 * 299.99842 * 6 5 3 33 33 H 1.08999 * 109.47774 * 60.00070 * 6 5 3 34 34 H 1.08993 * 109.47411 * 300.00048 * 7 5 3 35 35 H 1.09000 * 109.46964 * 60.00089 * 7 5 3 36 36 H 1.08999 * 109.47243 * 179.97438 * 7 5 3 37 37 H 1.09001 * 109.47011 * 60.00039 * 8 5 3 38 38 H 1.09000 * 109.46942 * 300.00613 * 8 5 3 39 39 H 0.97005 * 120.00021 * 359.97438 * 9 8 5 40 40 H 0.97005 * 119.99741 * 179.97438 * 17 16 14 41 41 H 1.08005 * 119.99914 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99912 * 180.22965 * 24 23 22 43 43 H 1.07995 * 119.99951 * 179.83776 * 25 24 23 44 44 H 1.08001 * 120.00370 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.99890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1138 0.5810 -1.2484 7 6 4.1129 0.5813 1.2502 8 6 4.0003 2.7419 0.0011 9 7 5.4632 2.8185 0.0011 10 6 6.0752 4.0193 0.0009 11 8 5.4146 5.0365 0.0014 12 6 7.5801 4.0981 0.0015 13 1 7.9701 3.6038 -0.8883 14 6 8.1185 3.4153 1.2322 15 1 7.5714 3.4680 2.1620 16 6 9.3065 2.7184 1.1700 17 7 9.7272 2.0412 2.2160 18 14 10.3185 2.7360 -0.4001 19 1 11.1825 3.9437 -0.4185 20 1 11.1677 1.5190 -0.4552 21 1 9.4100 2.7593 -1.5744 22 6 8.0075 5.5433 0.0019 23 6 7.7183 6.3493 1.0870 24 6 8.1137 7.6739 1.0890 25 6 8.7911 8.1946 0.0024 26 6 9.0757 7.3899 -1.0850 27 6 8.6837 6.0644 -1.0854 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 5.2023 0.6376 -1.2478 32 1 3.8047 -0.4643 -1.2484 33 1 3.7245 1.0749 -2.1386 34 1 3.7229 1.0755 2.1399 35 1 3.8038 -0.4639 1.2502 36 1 5.2014 0.6379 1.2504 37 1 3.6102 3.2358 0.8911 38 1 3.6108 3.2363 -0.8889 39 1 5.9915 2.0050 0.0011 40 1 10.5629 1.5506 2.1721 41 1 7.1857 5.9434 1.9344 42 1 7.8910 8.3026 1.9385 43 1 9.0978 9.2301 0.0028 44 1 9.6046 7.7968 -1.9342 45 1 8.9057 5.4358 -1.9351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001416919469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:18 Heat of formation + Delta-G solvation = -125.818597 kcal Electronic energy + Delta-G solvation = -27256.329959 eV Core-core repulsion = 23430.809762 eV Total energy + Delta-G solvation = -3825.520197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.96885 -40.95705 -39.53860 -38.05850 -37.26093 -35.50809 -34.04928 -33.28197 -31.62063 -29.68188 -28.71073 -28.36966 -27.51519 -25.45767 -24.31219 -23.36468 -22.50342 -21.04827 -20.71245 -19.08781 -18.42842 -18.32282 -17.64257 -17.48700 -17.17965 -16.63071 -16.41828 -16.05809 -15.74053 -15.46921 -14.94386 -14.86260 -14.79627 -14.55006 -14.26868 -14.18777 -14.04621 -13.74318 -13.47947 -13.41010 -13.28498 -12.97335 -12.87877 -12.83822 -12.69971 -12.20437 -12.04248 -12.01255 -11.93664 -11.83426 -11.60950 -11.41736 -11.38753 -10.89252 -10.55164 -10.00393 -9.63788 -9.36559 -8.31057 -6.39389 0.64779 0.71123 1.03624 1.35456 1.44038 1.47354 1.50880 1.86423 2.33128 2.51899 2.99551 3.17208 3.28506 3.64388 3.69143 3.93188 4.10247 4.22307 4.27991 4.30026 4.31740 4.36456 4.39983 4.49803 4.60035 4.61836 4.69863 4.72483 4.79550 4.81367 4.82817 4.88344 4.91305 5.16536 5.21349 5.22277 5.30002 5.32711 5.40907 5.55509 5.70304 5.74551 5.96001 6.22962 6.31508 6.59763 6.63025 6.67246 7.25669 7.43777 8.82995 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.003889 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.909957 B = 7198.002863 C = 8353.319878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.481 3.519 4 O -0.536 6.536 5 C -0.058 4.058 6 C -0.141 4.141 7 C -0.141 4.141 8 C 0.147 3.853 9 N -0.710 5.710 10 C 0.531 3.469 11 O -0.587 6.587 12 C 0.023 3.977 13 H 0.084 0.916 14 C -0.500 4.500 15 H 0.039 0.961 16 C 0.042 3.958 17 N -0.927 5.927 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.231 1.231 22 C -0.057 4.057 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 -4.806 -8.326 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.324 3.676 4 O -0.426 6.426 5 C -0.059 4.059 6 C -0.198 4.198 7 C -0.199 4.199 8 C 0.022 3.978 9 N -0.364 5.364 10 C 0.320 3.680 11 O -0.468 6.468 12 C 0.002 3.998 13 H 0.102 0.898 14 C -0.538 4.538 15 H 0.057 0.943 16 C -0.159 4.159 17 N -0.565 5.565 18 Si 0.743 3.257 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.155 1.155 22 C -0.058 4.058 23 C -0.123 4.123 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.143 4.143 27 C -0.170 4.170 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.280 -3.963 -8.243 13.760 hybrid contribution 0.422 -0.257 0.189 0.529 sum -9.858 -4.220 -8.054 13.411 Atomic orbital electron populations 1.23607 0.74651 1.05960 1.02492 1.86480 1.24932 1.31736 1.83370 1.23554 0.91533 0.81483 0.71036 1.90685 1.67753 1.37550 1.46590 1.20635 0.87274 0.96289 1.01738 1.21936 1.02606 1.01766 0.93475 1.21908 1.02453 1.01707 0.93787 1.20931 0.80800 0.94354 1.01680 1.45738 1.06181 1.08997 1.75467 1.21096 0.91118 0.82604 0.73184 1.90589 1.68109 1.36152 1.51952 1.18505 0.89363 0.92133 0.99801 0.89844 1.20412 1.07411 1.31577 0.94356 0.94282 1.25634 0.97637 0.93431 0.99209 1.69989 1.22719 1.31757 1.32016 0.86164 0.79911 0.78069 0.81602 1.19738 1.20772 1.15487 1.20122 0.96409 0.95429 0.93818 1.20831 0.99312 0.94492 0.97626 1.21355 0.99414 0.94794 0.99709 1.21341 0.99764 1.00827 0.93580 1.21370 1.00226 0.93229 0.99480 1.21255 1.01057 0.96878 0.97858 0.92229 0.91904 0.84502 0.90017 0.88620 0.91679 0.92865 0.88558 0.90505 0.93409 0.92017 0.74912 0.92034 0.89346 0.84923 0.83291 0.83373 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -7.20 10.37 -51.31 -0.53 -7.73 16 3 C 0.48 12.57 6.55 71.24 0.47 13.03 16 4 O -0.54 -17.58 15.73 21.95 0.35 -17.23 16 5 C -0.06 -1.44 0.72 -52.93 -0.04 -1.48 16 6 C -0.14 -2.74 8.23 71.98 0.59 -2.15 16 7 C -0.14 -3.31 8.23 71.98 0.59 -2.72 16 8 C 0.15 4.86 3.85 86.38 0.33 5.19 16 9 N -0.71 -25.74 4.86 -463.07 -2.25 -27.99 16 10 C 0.53 23.56 7.04 87.66 0.62 24.18 16 11 O -0.59 -29.28 15.37 -3.05 -0.05 -29.33 16 12 C 0.02 1.06 1.90 -13.03 -0.02 1.03 16 13 H 0.08 3.53 4.88 -2.39 -0.01 3.52 16 14 C -0.50 -25.87 8.06 25.60 0.21 -25.66 16 15 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 16 C 0.04 2.17 5.47 84.65 0.46 2.63 16 17 N -0.93 -52.26 13.96 21.45 0.30 -51.96 16 18 Si 0.92 39.24 27.23 68.60 1.87 41.10 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.23 -8.66 6.06 99.48 0.60 -8.06 16 22 C -0.06 -2.55 4.11 -19.87 -0.08 -2.63 16 23 C -0.10 -4.71 8.25 22.27 0.18 -4.53 16 24 C -0.13 -5.02 10.05 22.27 0.22 -4.80 16 25 C -0.14 -4.41 10.05 22.27 0.22 -4.19 16 26 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 27 C -0.15 -5.91 9.50 22.27 0.21 -5.70 16 28 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 29 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.57 6.86 -2.39 -0.02 1.55 16 32 H 0.09 1.45 8.11 -2.39 -0.02 1.43 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.77 8.11 -2.39 -0.02 1.75 16 36 H 0.08 1.95 6.86 -2.39 -0.02 1.94 16 37 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 38 H 0.06 2.15 8.10 -2.39 -0.02 2.14 16 39 H 0.41 13.57 6.05 -92.70 -0.56 13.01 16 40 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 41 H 0.09 4.34 7.93 -2.91 -0.02 4.32 16 42 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 44 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.12 4.27 7.95 -2.91 -0.02 4.25 16 Total: -1.00 -70.69 374.59 5.40 -65.29 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.33 Total: 37.94 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.39 Total: -10.09 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.95 Total: -79.95 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.23 Total: -54.29 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.87 Total: 41.10 kcal Total: -70.69 5.40 -65.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001416919469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.531 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds