Wall clock time and date at job start Tue Mar 31 2020 13:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.53000 * 109.46946 * 177.28489 * 3 2 1 5 5 H 1.09004 * 109.47016 * 302.10042 * 4 3 2 6 6 N 1.46496 * 109.47166 * 62.10363 * 4 3 2 7 7 C 1.34781 * 119.99662 * 267.96284 * 6 4 3 8 8 O 1.21273 * 120.00281 * 355.99506 * 7 6 4 9 9 C 1.50701 * 119.99867 * 176.00301 * 7 6 4 10 10 H 1.08997 * 109.47079 * 36.15015 * 9 7 6 11 11 C 1.50704 * 109.46878 * 276.15310 * 9 7 6 12 12 H 1.07993 * 119.99886 * 334.80921 * 11 9 7 13 13 C 1.37875 * 120.00059 * 154.80524 * 11 9 7 14 14 N 1.31516 * 120.00000 * 186.73902 * 13 11 9 15 15 Si 1.86802 * 120.00090 * 6.74022 * 13 11 9 16 16 H 1.48499 * 109.47208 * 84.34573 * 15 13 11 17 17 H 1.48498 * 109.47300 * 204.34953 * 15 13 11 18 18 H 1.48498 * 109.46960 * 324.35257 * 15 13 11 19 19 C 1.50700 * 109.47128 * 156.15469 * 9 7 6 20 20 C 1.38230 * 120.00017 * 69.99748 * 19 9 7 21 21 C 1.38239 * 119.99960 * 179.78570 * 20 19 9 22 22 C 1.38236 * 119.99638 * 0.44515 * 21 20 19 23 23 C 1.38230 * 120.00007 * 359.80485 * 22 21 20 24 24 C 1.38234 * 119.99531 * 250.26716 * 19 9 7 25 25 C 1.50702 * 109.46892 * 182.10308 * 4 3 2 26 26 O 1.20830 * 119.99652 * 240.00266 * 25 4 3 27 27 O 1.34227 * 120.00044 * 59.99984 * 25 4 3 28 28 C 1.45206 * 116.99861 * 180.02562 * 27 25 4 29 29 H 1.08999 * 109.46960 * 60.00186 * 1 2 3 30 30 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47160 * 300.00220 * 1 2 3 32 32 H 1.08996 * 109.47160 * 239.99779 * 2 1 3 33 33 H 1.08999 * 109.46960 * 119.99814 * 2 1 3 34 34 H 1.08999 * 109.47011 * 57.28295 * 3 2 1 35 35 H 1.08998 * 109.47248 * 297.28436 * 3 2 1 36 36 H 0.96995 * 120.00426 * 87.95381 * 6 4 3 37 37 H 0.97001 * 119.99615 * 180.02562 * 14 13 11 38 38 H 1.08005 * 120.00146 * 359.97438 * 20 19 9 39 39 H 1.08001 * 119.99879 * 180.27056 * 21 20 19 40 40 H 1.07996 * 119.99618 * 179.83644 * 22 21 20 41 41 H 1.08003 * 119.99864 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.00618 * 359.97438 * 24 19 9 43 43 H 1.08997 * 109.47236 * 180.02562 * 28 27 25 44 44 H 1.09007 * 109.46545 * 299.99721 * 28 27 25 45 45 H 1.08992 * 109.47116 * 59.99534 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5685 1.4430 0.0683 5 1 3.8924 0.9108 0.9628 6 7 4.1106 0.7778 -1.1190 7 6 4.3737 -0.5438 -1.0898 8 8 4.2307 -1.1680 -0.0599 9 6 4.8459 -1.2457 -2.3369 10 1 5.4978 -0.5808 -2.9034 11 6 3.6564 -1.6229 -3.1819 12 1 2.6900 -1.7647 -2.7213 13 6 3.8020 -1.7867 -4.5431 14 7 2.7438 -1.9847 -5.2985 15 14 5.5023 -1.7276 -5.3145 16 1 6.1378 -3.0661 -5.2151 17 1 5.3845 -1.3404 -6.7433 18 1 6.3363 -0.7294 -4.5982 19 6 5.6061 -2.4899 -1.9558 20 6 4.9359 -3.5703 -1.4133 21 6 5.6326 -4.7133 -1.0678 22 6 7.0007 -4.7722 -1.2564 23 6 7.6716 -3.6899 -1.7941 24 6 6.9743 -2.5486 -2.1436 25 6 4.0685 2.8637 0.1204 26 8 4.8023 3.2780 -0.7455 27 8 3.6985 3.6689 1.1287 28 6 4.2179 5.0248 1.1141 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6374 1.9702 0.8646 35 1 1.7170 1.9421 -0.9133 36 1 4.2801 1.2883 -1.9261 37 1 2.8463 -2.1004 -6.2561 38 1 3.8676 -3.5227 -1.2621 39 1 5.1083 -5.5590 -0.6480 40 1 7.5454 -5.6642 -0.9840 41 1 8.7405 -3.7361 -1.9418 42 1 7.4985 -1.7030 -2.5638 43 1 3.8431 5.5668 1.9822 44 1 5.3071 4.9969 1.1460 45 1 3.8939 5.5281 0.2032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434397519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:07 Heat of formation + Delta-G solvation = -126.565475 kcal Electronic energy + Delta-G solvation = -27697.857647 eV Core-core repulsion = 23872.305063 eV Total energy + Delta-G solvation = -3825.552584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96017 -40.90982 -39.55967 -37.74053 -36.88981 -35.48817 -34.35759 -33.32609 -31.62118 -31.08140 -29.31816 -28.39073 -26.04627 -25.27626 -23.35450 -22.89059 -22.25738 -21.62941 -21.14452 -19.09683 -18.89793 -18.35935 -17.78365 -17.47794 -17.26535 -16.72741 -16.39403 -16.09442 -15.77931 -15.43989 -15.20439 -14.90540 -14.60728 -14.42919 -14.30574 -14.14083 -14.08944 -13.78717 -13.52336 -13.40460 -13.11069 -12.97962 -12.71627 -12.67221 -12.48267 -12.15322 -12.05724 -11.96635 -11.85706 -11.66903 -11.54403 -11.49199 -11.39240 -10.87570 -10.57607 -10.13205 -9.63728 -9.38594 -8.34738 -6.40894 0.61477 0.69932 0.95886 1.31737 1.38455 1.38845 1.42182 1.82306 2.29738 2.41053 2.98419 3.13104 3.51215 3.82486 3.92328 4.09504 4.16801 4.22281 4.22497 4.30649 4.32048 4.33599 4.41395 4.42802 4.58930 4.62015 4.70545 4.75899 4.81644 4.87307 4.91931 4.93472 5.17091 5.20731 5.24999 5.31750 5.34570 5.39809 5.44861 5.49624 5.69131 5.75593 5.96828 6.19579 6.29589 6.50394 6.57155 6.63104 7.22937 7.34046 8.79456 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.004576 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.954475 B = 6117.981749 C = 6359.693074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.112 4.112 4 C 0.153 3.847 5 H 0.126 0.874 6 N -0.715 5.715 7 C 0.550 3.450 8 O -0.564 6.564 9 C 0.027 3.973 10 H 0.068 0.932 11 C -0.494 4.494 12 H 0.042 0.958 13 C 0.039 3.961 14 N -0.929 5.929 15 Si 0.917 3.083 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.236 1.236 19 C -0.067 4.067 20 C -0.090 4.090 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.153 4.153 25 C 0.469 3.531 26 O -0.526 6.526 27 O -0.351 6.351 28 C 0.027 3.973 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.410 0.590 37 H 0.269 0.731 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.061 0.939 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 8.531 12.099 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.150 4.150 4 C 0.046 3.954 5 H 0.144 0.856 6 N -0.368 5.368 7 C 0.339 3.661 8 O -0.443 6.443 9 C 0.006 3.994 10 H 0.085 0.915 11 C -0.531 4.531 12 H 0.060 0.940 13 C -0.161 4.161 14 N -0.567 5.567 15 Si 0.741 3.259 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.160 1.160 19 C -0.068 4.068 20 C -0.109 4.109 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.172 4.172 25 C 0.312 3.688 26 O -0.415 6.415 27 O -0.266 6.266 28 C -0.066 4.066 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.054 8.247 12.414 15.445 hybrid contribution 0.410 0.259 -1.441 1.520 sum 4.464 8.505 10.973 14.583 Atomic orbital electron populations 1.21696 0.94352 1.01610 1.02337 1.21422 0.96839 0.95899 1.01393 1.21931 0.90503 0.98261 1.04348 1.20517 0.96052 0.86565 0.92228 0.85616 1.45726 1.66841 1.08945 1.15311 1.20698 0.74588 0.81107 0.89692 1.90565 1.54200 1.65888 1.33647 1.18404 0.96476 0.92356 0.92214 0.91452 1.20372 0.93209 1.48170 0.91378 0.93982 1.25572 0.99674 0.93593 0.97273 1.69990 1.31018 1.49664 1.06055 0.86192 0.81580 0.80308 0.77817 1.19428 1.21262 1.15993 1.20124 0.93448 0.96577 0.96615 1.20881 0.99233 0.93443 0.97310 1.21397 0.95399 0.97727 1.00900 1.21368 0.94068 0.99456 1.00211 1.21352 1.00773 0.93108 0.99381 1.21290 0.93509 0.99704 1.02654 1.23735 0.77303 0.88691 0.79115 1.90665 1.35264 1.76183 1.39351 1.86488 1.67978 1.25917 1.46231 1.23644 1.00077 0.77668 1.05226 0.93081 0.93478 0.90433 0.94812 0.92153 0.87062 0.91295 0.75430 0.92187 0.88694 0.84732 0.83235 0.83500 0.86149 0.84409 0.91983 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.12 -3.80 4.71 30.60 0.14 -3.66 16 3 C -0.11 -3.00 4.85 30.59 0.15 -2.85 16 4 C 0.15 4.56 2.79 44.25 0.12 4.68 16 5 H 0.13 3.81 7.31 -2.38 -0.02 3.80 16 6 N -0.71 -26.08 4.64 -446.10 -2.07 -28.15 16 7 C 0.55 23.56 5.34 87.66 0.47 24.03 16 8 O -0.56 -25.61 13.70 -3.01 -0.04 -25.65 16 9 C 0.03 1.25 1.87 -13.03 -0.02 1.23 16 10 H 0.07 3.00 5.56 -2.39 -0.01 2.99 16 11 C -0.49 -26.63 8.06 25.60 0.21 -26.42 16 12 H 0.04 2.56 7.89 -2.91 -0.02 2.54 16 13 C 0.04 2.16 5.47 84.65 0.46 2.63 16 14 N -0.93 -55.21 13.96 21.45 0.30 -54.91 16 15 Si 0.92 42.43 26.09 68.60 1.79 44.22 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.24 -9.87 6.15 99.48 0.61 -9.26 16 19 C -0.07 -2.95 3.66 -19.87 -0.07 -3.03 16 20 C -0.09 -3.99 8.12 22.27 0.18 -3.81 16 21 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 22 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 23 C -0.13 -4.15 10.05 22.27 0.22 -3.93 16 24 C -0.15 -5.92 8.79 22.27 0.20 -5.72 16 25 C 0.47 12.93 7.32 71.24 0.52 13.45 16 26 O -0.53 -17.06 15.69 21.95 0.34 -16.71 16 27 O -0.35 -7.63 10.43 -51.38 -0.54 -8.17 16 28 C 0.03 0.40 10.56 113.37 1.20 1.60 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.39 6.38 -2.39 -0.02 1.38 16 33 H 0.06 2.00 7.89 -2.39 -0.02 1.98 16 34 H 0.11 2.28 8.07 -2.39 -0.02 2.26 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 14.83 7.99 -92.71 -0.74 14.09 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.09 4.61 7.73 -2.91 -0.02 4.59 16 39 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 42 H 0.12 4.26 7.97 -2.91 -0.02 4.23 16 43 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 0.97 8.13 -2.38 -0.02 0.95 16 45 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 Total: -1.00 -68.99 372.72 4.88 -64.11 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: 0.15 Total: 38.87 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.94 Total: -13.60 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.77 Total: -83.06 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.23 Total: -50.53 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.79 Total: 44.22 kcal Total: -68.99 4.88 -64.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434397519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.455 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds