Wall clock time and date at job start Tue Mar 31 2020 13:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47058 * 2 1 4 4 C 1.52998 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47200 * 55.00625 * 4 3 2 6 6 C 1.53009 * 109.46683 * 175.00245 * 4 3 2 7 7 N 1.46498 * 109.46493 * 184.99967 * 6 4 3 8 8 C 1.34783 * 119.99696 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99926 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00197 * 180.02562 * 8 7 6 11 11 H 1.08991 * 109.47577 * 59.99294 * 10 8 7 12 12 C 1.50707 * 109.46622 * 299.99637 * 10 8 7 13 13 H 1.08003 * 119.99832 * 324.87438 * 12 10 8 14 14 C 1.37870 * 119.99905 * 144.88167 * 12 10 8 15 15 N 1.31510 * 120.00257 * 5.19043 * 14 12 10 16 16 Si 1.86800 * 120.00190 * 185.19252 * 14 12 10 17 17 H 1.48501 * 109.46803 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47453 * 119.99610 * 16 14 12 19 19 H 1.48497 * 109.47291 * 240.00104 * 16 14 12 20 20 C 1.50702 * 109.47162 * 180.02562 * 10 8 7 21 21 C 1.38231 * 120.00155 * 66.00541 * 20 10 8 22 22 C 1.38236 * 120.00054 * 179.81256 * 21 20 10 23 23 C 1.38237 * 119.99561 * 0.39547 * 22 21 20 24 24 C 1.38232 * 120.00068 * 359.85642 * 23 22 21 25 25 C 1.38230 * 120.00430 * 359.95837 * 24 23 22 26 26 C 1.50703 * 109.47212 * 294.99917 * 4 3 2 27 27 O 1.20818 * 119.99831 * 240.00176 * 26 4 3 28 28 O 1.34228 * 119.99659 * 60.00037 * 26 4 3 29 29 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47245 * 299.99616 * 1 2 3 31 31 H 1.09004 * 109.47094 * 60.00181 * 1 2 3 32 32 H 1.08997 * 109.47245 * 240.00384 * 2 1 3 33 33 H 1.08999 * 109.47764 * 120.00041 * 2 1 3 34 34 H 1.08997 * 109.46779 * 60.00098 * 3 2 1 35 35 H 1.08999 * 109.46867 * 300.00591 * 3 2 1 36 36 H 1.09001 * 109.47104 * 65.00294 * 6 4 3 37 37 H 1.09001 * 109.47124 * 304.99850 * 6 4 3 38 38 H 0.96994 * 120.00763 * 0.02562 * 7 6 4 39 39 H 0.97001 * 120.00706 * 180.02562 * 15 14 12 40 40 H 1.08000 * 120.00042 * 359.97438 * 21 20 10 41 41 H 1.07999 * 120.00369 * 180.23431 * 22 21 20 42 42 H 1.08004 * 119.99659 * 179.84226 * 23 22 21 43 43 H 1.08008 * 120.00080 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00528 * 179.97438 * 25 24 23 45 45 H 0.96698 * 116.99953 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8534 -0.8427 6 6 4.0798 2.8797 -0.1263 7 7 5.5398 2.8710 -0.2470 8 6 6.2128 4.0323 -0.3697 9 8 5.6097 5.0844 -0.3806 10 6 7.7146 4.0234 -0.4944 11 1 8.0023 3.4574 -1.3803 12 6 8.3164 3.3813 0.7291 13 1 7.8542 3.5216 1.6951 14 6 9.4569 2.6151 0.6152 15 7 10.0775 2.5275 -0.5410 16 14 10.1207 1.7014 2.1030 17 1 9.2468 1.9628 3.2749 18 1 10.1453 0.2440 1.8186 19 1 11.4980 2.1713 2.3987 20 6 8.2169 5.4389 -0.6168 21 6 8.0809 6.3147 0.4439 22 6 8.5452 7.6121 0.3330 23 6 9.1381 8.0358 -0.8416 24 6 9.2694 7.1615 -1.9042 25 6 8.8086 5.8631 -1.7919 26 6 4.0729 0.8419 1.2868 27 8 4.7678 1.4961 2.0276 28 8 3.7487 -0.4198 1.6103 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 3.7919 3.4462 0.7593 37 1 3.6448 3.3435 -1.0116 38 1 6.0222 2.0295 -0.2386 39 1 10.8797 1.9881 -0.6213 40 1 7.6142 5.9847 1.3603 41 1 8.4423 8.2953 1.1631 42 1 9.4986 9.0502 -0.9292 43 1 9.7324 7.4927 -2.8221 44 1 8.9109 5.1800 -2.6223 45 1 4.0951 -0.7616 2.4459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573727758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:14 Heat of formation + Delta-G solvation = -127.769611 kcal Electronic energy + Delta-G solvation = -27089.509379 eV Core-core repulsion = 23263.904580 eV Total energy + Delta-G solvation = -3825.604799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.50913 -39.00857 -37.69819 -36.28117 -36.07280 -33.79440 -33.57505 -31.15610 -30.86545 -29.87541 -27.55727 -25.80738 -24.50069 -23.63736 -21.75096 -21.52268 -20.66108 -20.44128 -19.11015 -18.02829 -17.16629 -16.67099 -16.12211 -15.90693 -15.67439 -15.06509 -14.72923 -14.46161 -14.24372 -13.99893 -13.79717 -13.63011 -13.31734 -13.14614 -12.69868 -12.46473 -12.28171 -12.23170 -12.14911 -11.75379 -11.59575 -11.55179 -11.39568 -11.17274 -11.01289 -10.99154 -10.92487 -10.66160 -10.33565 -10.31454 -10.19818 -9.95194 -9.34235 -8.73461 -8.56087 -8.27679 -7.88470 -7.54257 -6.21936 -4.26519 2.30855 2.43931 2.46743 3.00728 3.21285 3.30407 3.37269 3.77142 3.97603 4.34449 4.51108 4.70231 4.80938 4.91018 4.97584 5.08448 5.14932 5.36536 5.40822 5.47198 5.65164 5.67452 5.77193 5.82472 5.85269 5.89300 5.94915 6.00514 6.10778 6.26121 6.27282 6.40192 6.55149 6.57331 6.66566 6.91381 7.03433 7.19148 7.26227 7.42732 7.51082 7.71191 7.82296 7.97301 8.01739 8.13996 8.40987 8.78880 9.29523 9.39369 10.86478 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.004085 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.713253 B = 6852.951971 C = 8410.646166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C -0.108 4.108 4 C -0.091 4.091 5 H 0.114 0.886 6 C 0.136 3.864 7 N -0.724 5.724 8 C 0.530 3.470 9 O -0.569 6.569 10 C 0.050 3.950 11 H 0.088 0.912 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.073 3.927 15 N -0.880 5.880 16 Si 0.896 3.104 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.007 4.007 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.132 4.132 25 C -0.118 4.118 26 C 0.471 3.529 27 O -0.485 6.485 28 O -0.517 6.517 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.402 0.598 39 H 0.265 0.735 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 -5.413 -0.787 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C -0.146 4.146 4 C -0.111 4.111 5 H 0.132 0.868 6 C 0.011 3.989 7 N -0.376 5.376 8 C 0.320 3.680 9 O -0.448 6.448 10 C 0.029 3.971 11 H 0.105 0.895 12 C -0.545 4.545 13 H 0.083 0.917 14 C -0.132 4.132 15 N -0.517 5.517 16 Si 0.723 3.277 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.008 4.008 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.168 4.168 24 C -0.151 4.151 25 C -0.136 4.136 26 C 0.312 3.688 27 O -0.370 6.370 28 O -0.330 6.330 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.237 0.763 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -13.458 -4.396 -1.043 14.197 hybrid contribution 1.085 -1.198 1.394 2.134 sum -12.373 -5.594 0.351 13.584 Atomic orbital electron populations 1.21763 0.95947 1.01523 1.01659 1.21777 0.95631 0.95994 1.03847 1.21547 0.90972 0.98455 1.03661 1.21454 0.98121 0.97573 0.93917 0.86803 1.21073 0.82885 0.92509 1.02423 1.45785 1.05378 1.10283 1.76191 1.21591 0.91416 0.82162 0.72838 1.90573 1.71272 1.31347 1.51612 1.18119 0.86091 0.91392 1.01493 0.89467 1.20759 1.10752 1.30246 0.92745 0.91746 1.24950 0.96169 0.95913 0.96137 1.69930 1.18532 1.39254 1.23948 0.86457 0.78926 0.79304 0.83021 1.19393 1.20844 1.20857 1.20012 0.93903 0.95150 0.91773 1.20833 0.98227 0.92624 0.98638 1.20947 1.00663 0.96338 0.97336 1.20783 1.02845 0.98746 0.94414 1.20888 1.01644 0.94367 0.98158 1.20974 0.99838 0.95122 0.97701 1.23411 0.77620 0.79465 0.88339 1.90864 1.33915 1.61184 1.51011 1.84571 1.71965 1.31003 1.45417 0.92792 0.92894 0.92865 0.91768 0.89626 0.91156 0.89976 0.91280 0.90748 0.76306 0.92542 0.87139 0.87647 0.87772 0.87615 0.87056 0.73699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.14 -1.08 5.57 -26.73 -0.15 -1.23 16 3 C -0.11 -0.96 4.67 -26.73 -0.12 -1.09 16 4 C -0.09 -1.04 2.37 -91.77 -0.22 -1.25 16 5 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 6 C 0.14 2.06 4.63 -4.04 -0.02 2.04 16 7 N -0.72 -13.76 4.71 -60.29 -0.28 -14.04 16 8 C 0.53 12.16 7.04 -10.98 -0.08 12.08 16 9 O -0.57 -14.16 15.42 5.56 0.09 -14.07 16 10 C 0.05 1.23 2.38 -94.07 -0.22 1.00 16 11 H 0.09 2.23 7.13 -51.93 -0.37 1.86 16 12 C -0.51 -13.25 7.46 -34.44 -0.26 -13.51 16 13 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 14 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 15 N -0.88 -23.73 12.84 55.43 0.71 -23.02 16 16 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.01 -0.18 4.30 -104.62 -0.45 -0.63 16 21 C -0.09 -2.00 8.31 -39.58 -0.33 -2.33 16 22 C -0.13 -2.77 10.05 -39.58 -0.40 -3.17 16 23 C -0.15 -2.89 10.05 -39.58 -0.40 -3.28 16 24 C -0.13 -2.64 10.05 -39.59 -0.40 -3.04 16 25 C -0.12 -2.66 9.67 -39.58 -0.38 -3.04 16 26 C 0.47 6.18 7.27 36.01 0.26 6.44 16 27 O -0.48 -8.63 16.05 -18.74 -0.30 -8.93 16 28 O -0.52 -5.03 10.57 -39.25 -0.41 -5.45 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.74 5.46 -51.93 -0.28 0.46 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.17 7.96 -51.93 -0.41 0.76 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.40 7.52 8.04 -40.82 -0.33 7.19 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.11 2.66 7.89 -52.49 -0.41 2.24 16 41 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 43 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.11 2.40 7.96 -52.49 -0.42 1.98 16 45 H 0.40 2.63 9.10 45.56 0.41 3.05 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -32.60 378.59 -8.42 -41.01 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -6.01 Total: 12.95 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.89 Total: -9.90 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.43 Total: -37.06 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.63 Total: -28.45 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.60 -8.42 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573727758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.756 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds