Wall clock time and date at job start Tue Mar 31 2020 13:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47058 * 2 1 4 4 C 1.52998 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47200 * 55.00625 * 4 3 2 6 6 C 1.53009 * 109.46683 * 175.00245 * 4 3 2 7 7 N 1.46498 * 109.46493 * 184.99967 * 6 4 3 8 8 C 1.34783 * 119.99696 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99926 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00197 * 180.02562 * 8 7 6 11 11 H 1.08991 * 109.47577 * 59.99294 * 10 8 7 12 12 C 1.50707 * 109.46622 * 299.99637 * 10 8 7 13 13 H 1.08003 * 119.99832 * 324.87438 * 12 10 8 14 14 C 1.37870 * 119.99905 * 144.88167 * 12 10 8 15 15 N 1.31510 * 120.00257 * 5.19043 * 14 12 10 16 16 Si 1.86800 * 120.00190 * 185.19252 * 14 12 10 17 17 H 1.48501 * 109.46803 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47453 * 119.99610 * 16 14 12 19 19 H 1.48497 * 109.47291 * 240.00104 * 16 14 12 20 20 C 1.50702 * 109.47162 * 180.02562 * 10 8 7 21 21 C 1.38231 * 120.00155 * 66.00541 * 20 10 8 22 22 C 1.38236 * 120.00054 * 179.81256 * 21 20 10 23 23 C 1.38237 * 119.99561 * 0.39547 * 22 21 20 24 24 C 1.38232 * 120.00068 * 359.85642 * 23 22 21 25 25 C 1.38230 * 120.00430 * 359.95837 * 24 23 22 26 26 C 1.50703 * 109.47212 * 294.99917 * 4 3 2 27 27 O 1.20818 * 119.99831 * 240.00176 * 26 4 3 28 28 O 1.34228 * 119.99659 * 60.00037 * 26 4 3 29 29 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47245 * 299.99616 * 1 2 3 31 31 H 1.09004 * 109.47094 * 60.00181 * 1 2 3 32 32 H 1.08997 * 109.47245 * 240.00384 * 2 1 3 33 33 H 1.08999 * 109.47764 * 120.00041 * 2 1 3 34 34 H 1.08997 * 109.46779 * 60.00098 * 3 2 1 35 35 H 1.08999 * 109.46867 * 300.00591 * 3 2 1 36 36 H 1.09001 * 109.47104 * 65.00294 * 6 4 3 37 37 H 1.09001 * 109.47124 * 304.99850 * 6 4 3 38 38 H 0.96994 * 120.00763 * 0.02562 * 7 6 4 39 39 H 0.97001 * 120.00706 * 180.02562 * 15 14 12 40 40 H 1.08000 * 120.00042 * 359.97438 * 21 20 10 41 41 H 1.07999 * 120.00369 * 180.23431 * 22 21 20 42 42 H 1.08004 * 119.99659 * 179.84226 * 23 22 21 43 43 H 1.08008 * 120.00080 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00528 * 179.97438 * 25 24 23 45 45 H 0.96698 * 116.99953 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8534 -0.8427 6 6 4.0798 2.8797 -0.1263 7 7 5.5398 2.8710 -0.2470 8 6 6.2128 4.0323 -0.3697 9 8 5.6097 5.0844 -0.3806 10 6 7.7146 4.0234 -0.4944 11 1 8.0023 3.4574 -1.3803 12 6 8.3164 3.3813 0.7291 13 1 7.8542 3.5216 1.6951 14 6 9.4569 2.6151 0.6152 15 7 10.0775 2.5275 -0.5410 16 14 10.1207 1.7014 2.1030 17 1 9.2468 1.9628 3.2749 18 1 10.1453 0.2440 1.8186 19 1 11.4980 2.1713 2.3987 20 6 8.2169 5.4389 -0.6168 21 6 8.0809 6.3147 0.4439 22 6 8.5452 7.6121 0.3330 23 6 9.1381 8.0358 -0.8416 24 6 9.2694 7.1615 -1.9042 25 6 8.8086 5.8631 -1.7919 26 6 4.0729 0.8419 1.2868 27 8 4.7678 1.4961 2.0276 28 8 3.7487 -0.4198 1.6103 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 3.7919 3.4462 0.7593 37 1 3.6448 3.3435 -1.0116 38 1 6.0222 2.0295 -0.2386 39 1 10.8797 1.9881 -0.6213 40 1 7.6142 5.9847 1.3603 41 1 8.4423 8.2953 1.1631 42 1 9.4986 9.0502 -0.9292 43 1 9.7324 7.4927 -2.8221 44 1 8.9109 5.1800 -2.6223 45 1 4.0951 -0.7616 2.4459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573727758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:13 Heat of formation + Delta-G solvation = -147.862216 kcal Electronic energy + Delta-G solvation = -27090.380660 eV Core-core repulsion = 23263.904580 eV Total energy + Delta-G solvation = -3826.476080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62502 -40.70485 -39.32359 -37.32695 -37.07618 -35.53122 -35.06073 -32.91871 -32.02823 -31.53567 -29.24049 -27.01103 -25.74177 -25.27521 -23.21857 -22.74280 -22.03493 -21.54915 -20.73567 -19.05308 -18.70761 -18.11099 -17.71259 -17.58439 -17.02523 -16.43329 -16.31929 -15.91395 -15.54270 -15.42782 -15.31659 -14.73722 -14.49484 -14.37984 -14.06759 -13.94364 -13.90057 -13.61020 -13.31754 -13.22936 -13.08783 -12.86823 -12.78517 -12.65125 -12.43567 -12.23048 -12.01122 -11.93769 -11.76406 -11.65208 -11.43737 -11.29539 -11.27817 -10.70955 -10.44074 -9.88221 -9.55784 -9.25756 -8.23558 -6.33509 0.75782 0.80629 1.25530 1.35215 1.38915 1.50745 1.94302 2.09393 2.40789 2.51307 3.05362 3.26417 3.45109 3.83758 3.99151 4.22092 4.26990 4.30182 4.31803 4.39164 4.46414 4.47664 4.54806 4.65248 4.71591 4.83732 4.88238 4.91610 4.97537 5.01354 5.07013 5.09807 5.33409 5.37042 5.44265 5.44798 5.62194 5.63206 5.65470 5.67605 5.78393 5.83127 5.94483 6.23898 6.40696 6.68335 6.75814 7.03385 7.32758 7.53595 8.84644 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.004085 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.713253 B = 6852.951971 C = 8410.646166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.102 4.102 4 C -0.082 4.082 5 H 0.135 0.865 6 C 0.134 3.866 7 N -0.714 5.714 8 C 0.526 3.474 9 O -0.594 6.594 10 C 0.052 3.948 11 H 0.069 0.931 12 C -0.511 4.511 13 H 0.042 0.958 14 C 0.037 3.963 15 N -0.903 5.903 16 Si 0.950 3.050 17 H -0.278 1.278 18 H -0.269 1.269 19 H -0.281 1.281 20 C -0.036 4.036 21 C -0.114 4.114 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.128 4.128 25 C -0.140 4.140 26 C 0.477 3.523 27 O -0.541 6.541 28 O -0.501 6.501 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.403 0.597 39 H 0.268 0.732 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.109 0.891 45 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 -5.439 -1.441 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C -0.140 4.140 4 C -0.102 4.102 5 H 0.153 0.847 6 C 0.010 3.990 7 N -0.364 5.364 8 C 0.315 3.685 9 O -0.475 6.475 10 C 0.031 3.969 11 H 0.087 0.913 12 C -0.549 4.549 13 H 0.060 0.940 14 C -0.165 4.165 15 N -0.540 5.540 16 Si 0.776 3.224 17 H -0.203 1.203 18 H -0.194 1.194 19 H -0.207 1.207 20 C -0.037 4.037 21 C -0.132 4.132 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.146 4.146 25 C -0.159 4.159 26 C 0.320 3.680 27 O -0.430 6.430 28 O -0.314 6.314 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.238 0.762 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.152 0.848 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.128 0.872 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -13.855 -4.485 -1.699 14.662 hybrid contribution 1.146 -1.178 1.595 2.291 sum -12.709 -5.663 -0.103 13.914 Atomic orbital electron populations 1.21752 0.95096 1.02053 1.01900 1.21742 0.96321 0.94990 1.03860 1.21566 0.88617 0.99522 1.04316 1.21450 0.99834 0.95056 0.93826 0.84703 1.21253 0.80413 0.95277 1.02032 1.45727 1.07167 1.09079 1.74428 1.21368 0.91101 0.82873 0.73131 1.90534 1.71516 1.32322 1.53161 1.18008 0.87227 0.91781 0.99878 0.91298 1.20702 1.11020 1.30771 0.92379 0.93957 1.25509 0.96241 0.96481 0.98304 1.70005 1.18896 1.39883 1.25183 0.85628 0.77925 0.78931 0.79942 1.20344 1.19378 1.20672 1.20100 0.95359 0.95202 0.93073 1.20827 1.00075 0.94394 0.97904 1.21309 0.99619 0.95360 0.99049 1.21274 1.01122 1.00531 0.93138 1.21319 1.00288 0.93117 0.99857 1.21140 1.00752 0.96766 0.97203 1.23706 0.76268 0.79833 0.88150 1.90859 1.36600 1.62669 1.52858 1.84539 1.71264 1.29183 1.46417 0.92149 0.93062 0.92268 0.91058 0.90285 0.91593 0.88322 0.93388 0.89345 0.76192 0.92290 0.89348 0.84792 0.83390 0.83990 0.87245 0.71833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.13 -1.82 5.57 30.60 0.17 -1.65 16 3 C -0.10 -1.64 4.67 30.60 0.14 -1.50 16 4 C -0.08 -1.80 2.37 -11.54 -0.03 -1.83 16 5 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 6 C 0.13 4.11 4.63 86.38 0.40 4.51 16 7 N -0.71 -28.11 4.71 -463.04 -2.18 -30.29 16 8 C 0.53 25.28 7.04 87.66 0.62 25.90 16 9 O -0.59 -30.79 15.42 -3.03 -0.05 -30.83 16 10 C 0.05 2.69 2.38 -13.03 -0.03 2.65 16 11 H 0.07 3.72 7.13 -2.39 -0.02 3.70 16 12 C -0.51 -27.86 7.46 25.60 0.19 -27.67 16 13 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 14 C 0.04 1.95 5.45 84.65 0.46 2.42 16 15 N -0.90 -49.52 12.84 21.44 0.28 -49.25 16 16 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 C -0.04 -1.82 4.30 -19.87 -0.09 -1.91 16 21 C -0.11 -5.50 8.31 22.27 0.18 -5.31 16 22 C -0.14 -5.41 10.05 22.27 0.22 -5.19 16 23 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 24 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 25 C -0.14 -6.37 9.67 22.27 0.22 -6.15 16 26 C 0.48 12.38 7.27 71.24 0.52 12.90 16 27 O -0.54 -19.83 16.05 21.99 0.35 -19.48 16 28 O -0.50 -9.04 10.57 -51.40 -0.54 -9.58 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.20 5.46 -2.39 -0.01 1.19 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.69 7.96 -2.39 -0.02 1.68 16 37 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.40 15.61 8.04 -92.71 -0.75 14.86 16 39 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.09 4.53 7.89 -2.91 -0.02 4.50 16 41 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 43 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.11 4.84 7.96 -2.91 -0.02 4.82 16 45 H 0.42 4.91 9.10 -74.06 -0.67 4.24 16 Total: -1.00 -73.04 378.59 3.61 -69.42 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.41 Total: 38.05 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 4.14 Total: -13.37 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.90 Total: -79.54 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -0.24 Total: -59.90 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -73.04 3.61 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573727758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.440 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds