Wall clock time and date at job start Tue Mar 31 2020 12:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 C 1.53005 * 109.47040 * 239.99938 * 2 1 3 5 5 C 1.50699 * 109.46839 * 59.99818 * 4 2 1 6 6 O 1.20822 * 120.00190 * 0.02562 * 5 4 2 7 7 O 1.34233 * 119.99576 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47055 * 120.00346 * 2 1 3 9 9 C 1.34777 * 119.99559 * 299.99096 * 8 2 1 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 2 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 2 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31513 * 119.99678 * 353.27932 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09005 * 109.47271 * 299.99684 * 1 2 3 29 29 H 1.09003 * 109.47520 * 59.99910 * 1 2 3 30 30 H 1.09005 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47266 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47328 * 299.99952 * 3 2 1 33 33 H 1.08993 * 109.47195 * 60.00126 * 3 2 1 34 34 H 1.08998 * 109.47146 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47138 * 300.00181 * 4 2 1 36 36 H 0.96707 * 116.99974 * 180.02562 * 7 5 4 37 37 H 0.97002 * 120.00062 * 120.00327 * 8 2 1 38 38 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 39 39 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 40 40 H 0.96999 * 120.00609 * 354.68773 * 17 16 14 41 41 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 43 43 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 44 44 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5375 -0.0109 -2.4797 6 8 0.8433 0.9717 -2.3688 7 8 1.8614 -0.4698 -3.6988 8 7 2.0183 -0.6907 1.1961 9 6 1.6928 -0.2301 2.4202 10 8 0.9953 0.7558 2.5315 11 6 2.1955 -0.9402 3.6507 12 6 1.6850 -0.2193 4.8999 13 1 1.9577 0.8347 4.8481 14 6 0.1854 -0.3471 4.9762 15 1 -0.3084 -1.1920 4.5193 16 6 -0.5561 0.6145 5.6291 17 7 0.0504 1.5710 6.2976 18 14 -2.4223 0.5543 5.5706 19 1 -2.9788 1.6881 6.3516 20 1 -2.8767 0.6542 4.1604 21 1 -2.8947 -0.7273 6.1533 22 6 2.3049 -0.8388 6.1260 23 6 2.0056 -2.1445 6.4672 24 6 2.5777 -2.7141 7.5894 25 6 3.4420 -1.9751 8.3754 26 6 3.7372 -0.6677 8.0370 27 6 3.1685 -0.0995 6.9124 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1299 -0.7209 -1.2495 35 1 1.6766 -1.7490 -1.2493 36 1 1.5159 0.0194 -4.4582 37 1 2.5760 -1.4793 1.1071 38 1 3.2856 -0.9399 3.6505 39 1 1.8326 -1.9681 3.6509 40 1 1.0152 1.5572 6.3962 41 1 1.3272 -2.7206 5.8554 42 1 2.3472 -3.7357 7.8534 43 1 3.8868 -2.4192 9.2535 44 1 4.4127 -0.0905 8.6508 45 1 3.3993 0.9219 6.6480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588756659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:47 Heat of formation + Delta-G solvation = -108.960261 kcal Electronic energy + Delta-G solvation = -27287.354046 eV Core-core repulsion = 23462.564881 eV Total energy + Delta-G solvation = -3824.789165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.86483 -39.40200 -38.42757 -36.79726 -35.68033 -34.14526 -31.92679 -31.09472 -30.11031 -29.04645 -28.41292 -27.00826 -25.08193 -23.17681 -22.53819 -21.67527 -20.61553 -19.57712 -19.18555 -18.32876 -16.98967 -16.67072 -16.38362 -16.21459 -15.89100 -15.01297 -14.77518 -14.34423 -14.10959 -13.80817 -13.63532 -13.55650 -13.33956 -12.99161 -12.83570 -12.50722 -12.33656 -12.20983 -12.03714 -11.79725 -11.71797 -11.52121 -11.12584 -10.99184 -10.95624 -10.70492 -10.70124 -10.45394 -10.42385 -10.11490 -10.02411 -9.67106 -8.84380 -8.63332 -8.55825 -8.25389 -8.13959 -7.63279 -6.20183 -3.89232 1.97043 2.18951 2.24437 2.65786 3.48393 3.51978 3.57546 3.72803 3.77813 4.38961 4.61613 4.69127 4.75077 4.98757 5.21586 5.35674 5.45297 5.53330 5.59593 5.63428 5.67209 5.76432 5.99491 6.00641 6.08445 6.08790 6.12995 6.17134 6.17714 6.31756 6.34356 6.42594 6.67419 6.69861 6.77050 6.80426 6.93151 6.97944 7.21319 7.23205 7.38385 7.67565 7.73609 7.85968 8.05859 8.24510 8.53566 8.98685 9.06046 9.79470 11.19250 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.003702 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.946396 B = 7561.664242 C = 8797.899155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.192 3.808 3 C -0.175 4.175 4 C -0.118 4.118 5 C 0.483 3.517 6 O -0.497 6.497 7 O -0.520 6.520 8 N -0.744 5.744 9 C 0.517 3.483 10 O -0.489 6.489 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.050 0.950 14 C -0.566 4.566 15 H 0.044 0.956 16 C 0.033 3.967 17 N -0.906 5.906 18 Si 1.058 2.942 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.291 1.291 22 C -0.033 4.033 23 C -0.107 4.107 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.410 0.590 37 H 0.391 0.609 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -8.004 -13.556 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.106 3.894 3 C -0.233 4.233 4 C -0.156 4.156 5 C 0.325 3.675 6 O -0.384 6.384 7 O -0.332 6.332 8 N -0.400 5.400 9 C 0.304 3.696 10 O -0.360 6.360 11 C -0.157 4.157 12 C 0.054 3.946 13 H 0.068 0.932 14 C -0.603 4.603 15 H 0.063 0.937 16 C -0.172 4.172 17 N -0.541 5.541 18 Si 0.888 3.112 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.218 1.218 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.149 4.149 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.269 0.731 37 H 0.224 0.776 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.192 -6.358 -12.604 15.415 hybrid contribution 1.393 -1.088 -0.918 1.991 sum 7.584 -7.447 -13.522 17.199 Atomic orbital electron populations 1.22468 0.93669 1.01908 1.05357 1.19849 0.95045 0.92268 0.82276 1.22457 0.99806 0.95733 1.05277 1.21601 1.03510 1.01063 0.89460 1.23123 0.77266 0.82606 0.84515 1.90681 1.35199 1.25886 1.86632 1.84527 1.72553 1.59200 1.16954 1.46271 1.55880 1.32565 1.05316 1.20760 0.80182 0.85107 0.83537 1.90700 1.34432 1.25094 1.85758 1.21671 0.99259 1.00491 0.94230 1.17861 0.96223 0.95257 0.85250 0.93220 1.21506 0.89445 1.10958 1.38400 0.93728 1.25536 1.06128 0.92501 0.93067 1.70732 1.12201 1.33086 1.38130 0.83709 0.75504 0.75749 0.76276 1.20983 1.21471 1.21793 1.20866 0.90978 0.92974 0.98509 1.20926 0.98934 0.95716 0.96893 1.21017 0.98491 0.99185 0.96157 1.20823 1.01040 0.95075 1.00138 1.20967 1.00595 0.95304 0.97434 1.21077 0.98209 0.99587 0.95980 0.89404 0.90326 0.93521 0.93638 0.90209 0.89731 0.87254 0.87187 0.73102 0.77616 0.91735 0.90339 0.91790 0.86697 0.87474 0.87605 0.87472 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.10 37.16 0.30 -2.49 16 2 C 0.19 2.59 0.80 -131.82 -0.11 2.48 16 3 C -0.17 -2.64 8.10 37.16 0.30 -2.34 16 4 C -0.12 -1.08 4.99 -27.88 -0.14 -1.22 16 5 C 0.48 4.83 7.74 36.01 0.28 5.11 16 6 O -0.50 -6.54 12.11 -18.75 -0.23 -6.77 16 7 O -0.52 -3.76 13.42 -39.26 -0.53 -4.29 16 8 N -0.74 -10.36 5.11 -47.61 -0.24 -10.61 16 9 C 0.52 9.84 7.00 -10.99 -0.08 9.76 16 10 O -0.49 -11.63 11.23 5.55 0.06 -11.56 16 11 C -0.12 -2.18 4.95 -27.88 -0.14 -2.32 16 12 C 0.07 1.72 1.23 -92.92 -0.11 1.61 16 13 H 0.05 1.33 6.59 -51.93 -0.34 0.99 16 14 C -0.57 -15.18 6.35 -34.44 -0.22 -15.39 16 15 H 0.04 1.20 7.82 -52.48 -0.41 0.79 16 16 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16 17 N -0.91 -27.63 13.56 55.43 0.75 -26.88 16 18 Si 1.06 26.32 29.91 -169.99 -5.08 21.24 16 19 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.03 -0.71 4.53 -104.62 -0.47 -1.19 16 23 C -0.11 -2.16 8.90 -39.58 -0.35 -2.51 16 24 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 25 C -0.15 -2.64 10.05 -39.58 -0.40 -3.03 16 26 C -0.12 -2.28 10.05 -39.58 -0.40 -2.68 16 27 C -0.13 -2.70 9.18 -39.58 -0.36 -3.07 16 28 H 0.09 1.76 6.17 -51.93 -0.32 1.44 16 29 H 0.08 1.22 5.52 -51.93 -0.29 0.93 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.08 1.20 5.52 -51.93 -0.29 0.91 16 33 H 0.08 1.59 6.17 -51.93 -0.32 1.27 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 1.34 9.10 45.56 0.41 1.75 16 37 H 0.39 4.01 8.47 -40.82 -0.35 3.66 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 40 H 0.27 8.12 6.24 -40.82 -0.25 7.86 16 41 H 0.11 2.27 7.85 -52.48 -0.41 1.86 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.11 2.26 7.95 -52.49 -0.42 1.84 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -35.03 364.38 -7.74 -42.77 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.57 Total: 9.74 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.39 Total: -19.15 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.51 Total: -37.48 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.69 Total: -22.62 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.03 -7.74 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588756659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.188 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds