Wall clock time and date at job start Tue Mar 31 2020 12:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 C 1.53005 * 109.47040 * 239.99938 * 2 1 3 5 5 C 1.50699 * 109.46839 * 59.99818 * 4 2 1 6 6 O 1.20822 * 120.00190 * 0.02562 * 5 4 2 7 7 O 1.34233 * 119.99576 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47055 * 120.00346 * 2 1 3 9 9 C 1.34777 * 119.99559 * 299.99096 * 8 2 1 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 2 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 2 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31513 * 119.99678 * 353.27932 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09005 * 109.47271 * 299.99684 * 1 2 3 29 29 H 1.09003 * 109.47520 * 59.99910 * 1 2 3 30 30 H 1.09005 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47266 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47328 * 299.99952 * 3 2 1 33 33 H 1.08993 * 109.47195 * 60.00126 * 3 2 1 34 34 H 1.08998 * 109.47146 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47138 * 300.00181 * 4 2 1 36 36 H 0.96707 * 116.99974 * 180.02562 * 7 5 4 37 37 H 0.97002 * 120.00062 * 120.00327 * 8 2 1 38 38 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 39 39 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 40 40 H 0.96999 * 120.00609 * 354.68773 * 17 16 14 41 41 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 43 43 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 44 44 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5375 -0.0109 -2.4797 6 8 0.8433 0.9717 -2.3688 7 8 1.8614 -0.4698 -3.6988 8 7 2.0183 -0.6907 1.1961 9 6 1.6928 -0.2301 2.4202 10 8 0.9953 0.7558 2.5315 11 6 2.1955 -0.9402 3.6507 12 6 1.6850 -0.2193 4.8999 13 1 1.9577 0.8347 4.8481 14 6 0.1854 -0.3471 4.9762 15 1 -0.3084 -1.1920 4.5193 16 6 -0.5561 0.6145 5.6291 17 7 0.0504 1.5710 6.2976 18 14 -2.4223 0.5543 5.5706 19 1 -2.9788 1.6881 6.3516 20 1 -2.8767 0.6542 4.1604 21 1 -2.8947 -0.7273 6.1533 22 6 2.3049 -0.8388 6.1260 23 6 2.0056 -2.1445 6.4672 24 6 2.5777 -2.7141 7.5894 25 6 3.4420 -1.9751 8.3754 26 6 3.7372 -0.6677 8.0370 27 6 3.1685 -0.0995 6.9124 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1299 -0.7209 -1.2495 35 1 1.6766 -1.7490 -1.2493 36 1 1.5159 0.0194 -4.4582 37 1 2.5760 -1.4793 1.1071 38 1 3.2856 -0.9399 3.6505 39 1 1.8326 -1.9681 3.6509 40 1 1.0152 1.5572 6.3962 41 1 1.3272 -2.7206 5.8554 42 1 2.3472 -3.7357 7.8534 43 1 3.8868 -2.4192 9.2535 44 1 4.4127 -0.0905 8.6508 45 1 3.3993 0.9219 6.6480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588756659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:46 Heat of formation + Delta-G solvation = -133.118117 kcal Electronic energy + Delta-G solvation = -27288.401609 eV Core-core repulsion = 23462.564881 eV Total energy + Delta-G solvation = -3825.836728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78378 -40.74330 -39.89391 -37.78491 -36.75329 -35.91746 -33.52299 -32.73274 -31.59453 -30.33136 -29.57052 -28.27687 -26.97232 -24.85423 -23.61278 -23.16331 -21.90026 -21.09992 -20.49353 -19.08346 -18.81916 -17.99385 -17.48696 -17.28755 -16.99028 -16.48971 -16.14045 -15.74993 -15.65808 -15.56132 -15.05947 -14.75971 -14.65352 -14.48252 -14.05497 -14.00572 -13.90876 -13.45020 -13.31490 -13.13165 -13.06555 -12.80604 -12.65407 -12.59497 -12.18045 -12.11839 -12.06210 -11.99997 -11.95222 -11.69728 -11.48563 -11.36229 -10.63610 -10.47944 -10.19782 -9.94275 -9.62982 -9.25225 -8.41925 -6.08504 0.68948 0.75091 1.23022 1.46887 1.57403 1.72576 1.84892 1.99018 2.62420 2.67913 3.12241 3.38514 3.44261 3.87269 4.01854 4.14143 4.16358 4.29721 4.32319 4.46247 4.46721 4.51881 4.53862 4.58065 4.66256 4.80093 4.83021 4.86247 4.91402 4.93551 4.94339 5.15581 5.25338 5.34135 5.39551 5.42569 5.46169 5.67574 5.75868 5.80479 5.83840 5.96966 6.26394 6.33004 6.43036 6.80230 6.84958 7.04356 7.64584 7.66531 8.98461 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.003702 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.946396 B = 7561.664242 C = 8797.899155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.191 3.809 3 C -0.169 4.169 4 C -0.110 4.110 5 C 0.489 3.511 6 O -0.538 6.538 7 O -0.509 6.509 8 N -0.719 5.719 9 C 0.514 3.486 10 O -0.546 6.546 11 C -0.110 4.110 12 C 0.075 3.925 13 H 0.003 0.997 14 C -0.551 4.551 15 H 0.039 0.961 16 C -0.023 4.023 17 N -0.946 5.946 18 Si 1.093 2.907 19 H -0.291 1.291 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.055 4.055 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.153 4.153 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.429 0.571 37 H 0.415 0.585 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.134 0.866 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 -11.689 -14.235 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 C -0.227 4.227 4 C -0.148 4.148 5 C 0.332 3.668 6 O -0.428 6.428 7 O -0.323 6.323 8 N -0.375 5.375 9 C 0.301 3.699 10 O -0.421 6.421 11 C -0.151 4.151 12 C 0.056 3.944 13 H 0.021 0.979 14 C -0.589 4.589 15 H 0.057 0.943 16 C -0.222 4.222 17 N -0.584 5.584 18 Si 0.918 3.082 19 H -0.217 1.217 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.056 4.056 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.162 4.162 26 C -0.144 4.144 27 C -0.172 4.172 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.290 0.710 37 H 0.252 0.748 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.152 0.848 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.976 -10.123 -13.344 18.551 hybrid contribution 0.957 0.006 -0.784 1.237 sum 8.933 -10.117 -14.127 19.538 Atomic orbital electron populations 1.22375 0.95683 1.01910 1.02890 1.19830 0.93586 0.92056 0.84048 1.22364 1.00759 0.96659 1.02922 1.21521 1.05338 1.01435 0.86471 1.23194 0.76312 0.81798 0.85454 1.90686 1.37169 1.27740 1.87229 1.84475 1.72045 1.59008 1.16744 1.45914 1.54911 1.32738 1.03979 1.20876 0.79558 0.84390 0.85100 1.90711 1.37130 1.27568 1.86740 1.21567 1.00865 1.00483 0.92141 1.17682 0.94665 0.93510 0.88585 0.97870 1.21762 0.91549 1.09684 1.35923 0.94281 1.26613 1.09339 0.92822 0.93404 1.70809 1.11672 1.34869 1.41076 0.83257 0.72185 0.76581 0.76166 1.21654 1.21493 1.19091 1.20641 0.92658 0.94217 0.98046 1.21014 0.99637 0.95029 0.98298 1.21410 0.97343 1.00755 0.94768 1.21302 0.99877 0.94301 1.00769 1.21295 1.00336 0.96278 0.96463 1.21127 0.99465 0.99132 0.97448 0.94387 0.90202 0.92196 0.91835 0.90193 0.94387 0.84035 0.84243 0.70951 0.74810 0.88962 0.88497 0.92883 0.86727 0.83963 0.83622 0.84812 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 8.10 71.98 0.58 -4.93 16 2 C 0.19 4.97 0.80 3.60 0.00 4.98 16 3 C -0.17 -5.22 8.10 71.98 0.58 -4.63 16 4 C -0.11 -1.63 4.99 29.85 0.15 -1.48 16 5 C 0.49 8.53 7.74 71.24 0.55 9.08 16 6 O -0.54 -13.74 12.11 21.98 0.27 -13.47 16 7 O -0.51 -5.62 13.42 -51.44 -0.69 -6.31 16 8 N -0.72 -19.06 5.11 -422.92 -2.16 -21.21 16 9 C 0.51 19.94 7.00 87.66 0.61 20.55 16 10 O -0.55 -27.76 11.23 -3.04 -0.03 -27.80 16 11 C -0.11 -4.15 4.95 29.85 0.15 -4.00 16 12 C 0.07 3.66 1.23 -12.28 -0.02 3.65 16 13 H 0.00 0.18 6.59 -2.39 -0.02 0.16 16 14 C -0.55 -30.66 6.35 25.60 0.16 -30.50 16 15 H 0.04 2.15 7.82 -2.91 -0.02 2.13 16 16 C -0.02 -1.40 5.45 84.65 0.46 -0.94 16 17 N -0.95 -60.92 13.56 21.44 0.29 -60.63 16 18 Si 1.09 54.91 29.91 68.60 2.05 56.96 16 19 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.06 -2.44 4.53 -19.87 -0.09 -2.53 16 23 C -0.12 -4.77 8.90 22.27 0.20 -4.57 16 24 C -0.12 -4.04 10.05 22.27 0.22 -3.82 16 25 C -0.14 -4.45 10.05 22.27 0.22 -4.22 16 26 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 27 C -0.15 -6.49 9.18 22.27 0.20 -6.28 16 28 H 0.04 1.61 6.17 -2.38 -0.01 1.60 16 29 H 0.08 2.55 5.52 -2.39 -0.01 2.53 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 2.46 5.52 -2.39 -0.01 2.45 16 33 H 0.04 1.53 6.17 -2.39 -0.01 1.52 16 34 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.43 1.54 9.10 -74.05 -0.67 0.86 16 37 H 0.41 7.11 8.47 -92.71 -0.79 6.32 16 38 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.10 3.26 7.96 -2.39 -0.02 3.24 16 40 H 0.26 16.75 6.24 -92.71 -0.58 16.17 16 41 H 0.11 4.39 7.85 -2.91 -0.02 4.37 16 42 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 43 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.09 4.15 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -84.01 364.38 3.70 -80.31 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.24 Total: 25.93 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 4.22 Total: -33.78 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.87 Total: -81.84 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.46 Total: -47.58 kcal Atomic # 14 Polarization: 54.91 SS G_CDS: 2.05 Total: 56.96 kcal Total: -84.01 3.70 -80.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588756659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.809 kcal (2) G-P(sol) polarization free energy of solvation -84.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds