Wall clock time and date at job start Tue Mar 31 2020 12:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47458 * 2 1 4 4 C 1.53005 * 109.46886 * 240.00243 * 2 1 3 5 5 C 1.53004 * 109.47095 * 184.99937 * 4 2 1 6 6 H 1.08996 * 109.47262 * 305.00119 * 5 4 2 7 7 N 1.46500 * 109.46875 * 65.00029 * 5 4 2 8 8 C 1.34779 * 120.00014 * 204.99699 * 7 5 4 9 9 O 1.21280 * 119.99868 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00179 * 180.02562 * 8 7 5 11 11 H 1.09005 * 109.46796 * 300.00051 * 10 8 7 12 12 C 1.50700 * 109.47261 * 59.99827 * 10 8 7 13 13 H 1.07997 * 120.00070 * 235.43503 * 12 10 8 14 14 C 1.37870 * 119.99868 * 55.43521 * 12 10 8 15 15 N 1.31519 * 119.99950 * 2.11672 * 14 12 10 16 16 Si 1.86802 * 120.00069 * 182.11677 * 14 12 10 17 17 H 1.48494 * 109.46986 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47260 * 120.00182 * 16 14 12 19 19 H 1.48505 * 109.46738 * 239.99737 * 16 14 12 20 20 C 1.50696 * 109.47269 * 180.02562 * 10 8 7 21 21 C 1.38240 * 119.99916 * 226.75379 * 20 10 8 22 22 C 1.38237 * 119.99715 * 179.78670 * 21 20 10 23 23 C 1.38232 * 119.99930 * 0.43771 * 22 21 20 24 24 C 1.38230 * 120.00212 * 359.81625 * 23 22 21 25 25 C 1.38232 * 120.00124 * 359.97438 * 24 23 22 26 26 C 1.50699 * 109.46982 * 184.99887 * 5 4 2 27 27 O 1.20826 * 120.00041 * 239.99922 * 26 5 4 28 28 O 1.34233 * 119.99866 * 60.00159 * 26 5 4 29 29 H 1.09002 * 109.47611 * 59.99657 * 1 2 3 30 30 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47121 * 299.99821 * 1 2 3 32 32 H 1.09002 * 109.47611 * 120.00343 * 2 1 3 33 33 H 1.09003 * 109.47235 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.47081 * 300.00688 * 3 2 1 35 35 H 1.09007 * 109.46651 * 60.00480 * 3 2 1 36 36 H 1.08995 * 109.47215 * 304.99932 * 4 2 1 37 37 H 1.08996 * 109.46986 * 65.00285 * 4 2 1 38 38 H 0.97001 * 120.00310 * 25.00254 * 7 5 4 39 39 H 0.97010 * 119.99649 * 180.02562 * 15 14 12 40 40 H 1.07999 * 119.99707 * 359.97438 * 21 20 10 41 41 H 1.07996 * 119.99666 * 180.27518 * 22 21 20 42 42 H 1.08007 * 119.99857 * 179.83170 * 23 22 21 43 43 H 1.08007 * 119.99829 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00168 * 180.02562 * 25 24 23 45 45 H 0.96700 * 116.99856 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8310 -1.1881 6 1 3.9954 0.1611 -1.0528 7 7 3.9479 -1.6872 -0.0628 8 6 5.1611 -1.5480 0.5074 9 8 5.9356 -0.7137 0.0891 10 6 5.5555 -2.4292 1.6646 11 1 4.8583 -2.2797 2.4891 12 6 5.5199 -3.8723 1.2321 13 1 4.9210 -4.5854 1.7791 14 6 6.2519 -4.2823 0.1381 15 7 7.0137 -3.4230 -0.5030 16 14 6.1616 -6.0583 -0.4338 17 1 5.2408 -6.8169 0.4504 18 1 5.6576 -6.1039 -1.8299 19 1 7.5153 -6.6662 -0.3762 20 6 6.9489 -2.0734 2.1149 21 6 7.8768 -3.0718 2.3456 22 6 9.1563 -2.7451 2.7544 23 6 9.5052 -1.4207 2.9412 24 6 8.5758 -0.4226 2.7155 25 6 7.2976 -0.7490 2.3026 26 6 4.0772 -1.4302 -2.4724 27 8 4.6987 -2.4661 -2.4500 28 8 3.8432 -0.8130 -3.6412 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6053 -1.7197 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 3.3284 -2.3544 0.2720 39 1 7.5284 -3.7114 -1.2730 40 1 7.6029 -4.1068 2.2036 41 1 9.8824 -3.5249 2.9304 42 1 10.5041 -1.1656 3.2632 43 1 8.8484 0.6122 2.8619 44 1 6.5716 0.0309 2.1258 45 1 4.1920 -1.2353 -4.4382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588880723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:18 Heat of formation + Delta-G solvation = -113.575830 kcal Electronic energy + Delta-G solvation = -28398.295666 eV Core-core repulsion = 24573.306355 eV Total energy + Delta-G solvation = -3824.989311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.03463 -38.76025 -37.59244 -36.53025 -35.49583 -33.52206 -33.24681 -30.74633 -29.63295 -29.44882 -27.16434 -27.01097 -24.73732 -23.76659 -21.41597 -21.14874 -20.33552 -19.74740 -19.26289 -17.49953 -16.84587 -16.39645 -15.83574 -15.48818 -15.01621 -14.97698 -14.73797 -14.62097 -13.96791 -13.86424 -13.57047 -13.25597 -12.98049 -12.58920 -12.42155 -12.29414 -12.20926 -12.06508 -11.89017 -11.76158 -11.60746 -11.23387 -11.01343 -10.90329 -10.86253 -10.66680 -10.60525 -10.54473 -10.37755 -9.98911 -9.87184 -9.60966 -9.29640 -8.60328 -8.32401 -8.19032 -7.65070 -7.35095 -6.00183 -4.15841 2.58450 2.65580 2.85145 3.29280 3.34585 3.38649 3.41512 4.16273 4.27694 4.47056 4.79454 4.90326 4.92813 5.07295 5.29422 5.31350 5.48321 5.61503 5.65835 5.77021 5.83859 5.87320 5.89007 5.97250 5.99667 6.03093 6.09708 6.17443 6.36239 6.39310 6.43785 6.58550 6.71289 6.84151 6.94004 7.01093 7.17494 7.25656 7.34636 7.59037 7.69299 7.80790 7.87728 8.20824 8.34521 8.49085 8.57608 8.86366 9.51608 9.64131 11.00456 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.005627 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.234973 B = 4974.994647 C = 6153.364338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.116 4.116 5 C 0.167 3.833 6 H 0.116 0.884 7 N -0.713 5.713 8 C 0.558 3.442 9 O -0.545 6.545 10 C 0.062 3.938 11 H 0.056 0.944 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.086 3.914 15 N -0.823 5.823 16 Si 0.884 3.116 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.014 4.014 21 C -0.063 4.063 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.101 4.101 26 C 0.444 3.556 27 O -0.465 6.465 28 O -0.532 6.532 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.401 0.599 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 6.395 0.294 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.154 4.154 5 C 0.058 3.942 6 H 0.134 0.866 7 N -0.366 5.366 8 C 0.348 3.652 9 O -0.421 6.421 10 C 0.040 3.960 11 H 0.074 0.926 12 C -0.589 4.589 13 H 0.083 0.917 14 C -0.124 4.124 15 N -0.454 5.454 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.015 4.015 21 C -0.081 4.081 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.119 4.119 26 C 0.281 3.719 27 O -0.347 6.347 28 O -0.344 6.344 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.236 0.764 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.091 6.916 0.205 11.424 hybrid contribution 0.268 -1.689 -1.323 2.162 sum -8.822 5.227 -1.118 10.315 Atomic orbital electron populations 1.21828 0.95172 1.01689 1.01591 1.21096 0.95431 0.96561 0.98286 1.21908 1.01735 0.95686 1.01483 1.21880 0.92068 1.01847 0.99570 1.20222 0.95175 0.96370 0.82444 0.86626 1.45713 1.19051 1.39862 1.32023 1.21196 0.78522 0.81073 0.84436 1.90538 1.49455 1.36999 1.65068 1.17823 0.91045 0.95689 0.91408 0.92601 1.20591 1.31872 0.91561 1.14907 0.91690 1.24920 0.94502 0.97030 0.95988 1.69996 1.24285 1.33301 1.17813 0.86653 0.77745 0.85424 0.78952 1.19801 1.20979 1.21154 1.19841 0.96714 0.91615 0.93281 1.21153 0.91484 1.00652 0.94836 1.20989 0.97019 0.95481 1.03129 1.20760 0.98219 0.93527 1.03839 1.20806 0.94555 0.97694 1.03249 1.20963 0.95988 0.96461 0.98530 1.24524 0.78069 0.83763 0.85547 1.90865 1.34739 1.22672 1.86452 1.84525 1.75285 1.56752 1.17806 0.92846 0.92671 0.92686 0.90191 0.92078 0.92762 0.92760 0.90999 0.89796 0.76407 0.92736 0.85410 0.88116 0.88302 0.88199 0.87564 0.74365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.15 0.34 -0.94 16 2 C -0.10 -1.02 2.86 -90.62 -0.26 -1.28 16 3 C -0.15 -1.61 8.96 37.16 0.33 -1.28 16 4 C -0.12 -1.39 4.19 -26.73 -0.11 -1.50 16 5 C 0.17 2.76 2.35 -69.08 -0.16 2.60 16 6 H 0.12 2.00 5.78 -51.93 -0.30 1.70 16 7 N -0.71 -13.54 3.88 -54.93 -0.21 -13.75 16 8 C 0.56 12.80 5.29 -10.99 -0.06 12.74 16 9 O -0.54 -14.13 13.61 5.56 0.08 -14.06 16 10 C 0.06 1.43 2.77 -94.08 -0.26 1.17 16 11 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.55 -13.65 7.11 -34.44 -0.24 -13.89 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.09 2.24 4.01 -17.82 -0.07 2.17 16 15 N -0.82 -23.11 10.90 55.43 0.60 -22.51 16 16 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.01 -0.32 4.51 -104.62 -0.47 -0.79 16 21 C -0.06 -1.50 8.20 -39.58 -0.32 -1.82 16 22 C -0.15 -3.15 10.05 -39.58 -0.40 -3.55 16 23 C -0.15 -2.92 10.05 -39.59 -0.40 -3.31 16 24 C -0.14 -2.99 10.05 -39.59 -0.40 -3.39 16 25 C -0.10 -2.29 8.21 -39.58 -0.33 -2.61 16 26 C 0.44 8.34 7.66 36.01 0.28 8.62 16 27 O -0.47 -10.98 17.08 -18.75 -0.32 -11.30 16 28 O -0.53 -7.87 13.23 -39.27 -0.52 -8.39 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.93 7.62 -51.93 -0.40 0.54 16 33 H 0.06 0.77 6.46 -51.93 -0.34 0.43 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.92 7.99 -51.93 -0.42 0.51 16 38 H 0.40 7.04 8.49 -40.82 -0.35 6.69 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.13 3.13 6.05 -52.49 -0.32 2.82 16 41 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 43 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 44 H 0.11 2.35 7.00 -52.48 -0.37 1.98 16 45 H 0.40 4.48 9.10 45.56 0.41 4.89 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -32.83 370.79 -8.18 -41.01 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.84 Total: 14.47 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.53 Total: -7.08 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.39 Total: -36.26 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.76 Total: -33.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.83 -8.18 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588880723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.566 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds