Wall clock time and date at job start Tue Mar 31 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47458 * 2 1 4 4 C 1.53005 * 109.46886 * 240.00243 * 2 1 3 5 5 C 1.53004 * 109.47095 * 184.99937 * 4 2 1 6 6 H 1.08996 * 109.47262 * 305.00119 * 5 4 2 7 7 N 1.46500 * 109.46875 * 65.00029 * 5 4 2 8 8 C 1.34779 * 120.00014 * 204.99699 * 7 5 4 9 9 O 1.21280 * 119.99868 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00179 * 180.02562 * 8 7 5 11 11 H 1.09005 * 109.46796 * 300.00051 * 10 8 7 12 12 C 1.50700 * 109.47261 * 59.99827 * 10 8 7 13 13 H 1.07997 * 120.00070 * 235.43503 * 12 10 8 14 14 C 1.37870 * 119.99868 * 55.43521 * 12 10 8 15 15 N 1.31519 * 119.99950 * 2.11672 * 14 12 10 16 16 Si 1.86802 * 120.00069 * 182.11677 * 14 12 10 17 17 H 1.48494 * 109.46986 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47260 * 120.00182 * 16 14 12 19 19 H 1.48505 * 109.46738 * 239.99737 * 16 14 12 20 20 C 1.50696 * 109.47269 * 180.02562 * 10 8 7 21 21 C 1.38240 * 119.99916 * 226.75379 * 20 10 8 22 22 C 1.38237 * 119.99715 * 179.78670 * 21 20 10 23 23 C 1.38232 * 119.99930 * 0.43771 * 22 21 20 24 24 C 1.38230 * 120.00212 * 359.81625 * 23 22 21 25 25 C 1.38232 * 120.00124 * 359.97438 * 24 23 22 26 26 C 1.50699 * 109.46982 * 184.99887 * 5 4 2 27 27 O 1.20826 * 120.00041 * 239.99922 * 26 5 4 28 28 O 1.34233 * 119.99866 * 60.00159 * 26 5 4 29 29 H 1.09002 * 109.47611 * 59.99657 * 1 2 3 30 30 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47121 * 299.99821 * 1 2 3 32 32 H 1.09002 * 109.47611 * 120.00343 * 2 1 3 33 33 H 1.09003 * 109.47235 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.47081 * 300.00688 * 3 2 1 35 35 H 1.09007 * 109.46651 * 60.00480 * 3 2 1 36 36 H 1.08995 * 109.47215 * 304.99932 * 4 2 1 37 37 H 1.08996 * 109.46986 * 65.00285 * 4 2 1 38 38 H 0.97001 * 120.00310 * 25.00254 * 7 5 4 39 39 H 0.97010 * 119.99649 * 180.02562 * 15 14 12 40 40 H 1.07999 * 119.99707 * 359.97438 * 21 20 10 41 41 H 1.07996 * 119.99666 * 180.27518 * 22 21 20 42 42 H 1.08007 * 119.99857 * 179.83170 * 23 22 21 43 43 H 1.08007 * 119.99829 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00168 * 180.02562 * 25 24 23 45 45 H 0.96700 * 116.99856 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8310 -1.1881 6 1 3.9954 0.1611 -1.0528 7 7 3.9479 -1.6872 -0.0628 8 6 5.1611 -1.5480 0.5074 9 8 5.9356 -0.7137 0.0891 10 6 5.5555 -2.4292 1.6646 11 1 4.8583 -2.2797 2.4891 12 6 5.5199 -3.8723 1.2321 13 1 4.9210 -4.5854 1.7791 14 6 6.2519 -4.2823 0.1381 15 7 7.0137 -3.4230 -0.5030 16 14 6.1616 -6.0583 -0.4338 17 1 5.2408 -6.8169 0.4504 18 1 5.6576 -6.1039 -1.8299 19 1 7.5153 -6.6662 -0.3762 20 6 6.9489 -2.0734 2.1149 21 6 7.8768 -3.0718 2.3456 22 6 9.1563 -2.7451 2.7544 23 6 9.5052 -1.4207 2.9412 24 6 8.5758 -0.4226 2.7155 25 6 7.2976 -0.7490 2.3026 26 6 4.0772 -1.4302 -2.4724 27 8 4.6987 -2.4661 -2.4500 28 8 3.8432 -0.8130 -3.6412 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6053 -1.7197 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 3.3284 -2.3544 0.2720 39 1 7.5284 -3.7114 -1.2730 40 1 7.6029 -4.1068 2.2036 41 1 9.8824 -3.5249 2.9304 42 1 10.5041 -1.1656 3.2632 43 1 8.8484 0.6122 2.8619 44 1 6.5716 0.0309 2.1258 45 1 4.1920 -1.2353 -4.4382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588880723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:17 Heat of formation + Delta-G solvation = -133.837506 kcal Electronic energy + Delta-G solvation = -28399.174278 eV Core-core repulsion = 24573.306355 eV Total energy + Delta-G solvation = -3825.867923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53323 -40.43993 -39.14499 -37.75194 -36.94938 -35.42005 -34.65046 -32.59731 -31.32406 -30.81299 -28.73272 -27.95261 -26.00466 -25.57028 -23.02897 -22.78149 -21.75535 -20.99746 -20.75838 -18.95032 -18.64878 -17.88176 -17.35918 -17.09844 -16.78147 -16.57084 -16.30173 -15.74050 -15.57718 -15.32480 -14.91771 -14.87444 -14.25739 -14.20584 -13.92017 -13.84258 -13.74689 -13.35609 -13.15496 -12.98198 -12.90301 -12.80872 -12.54146 -12.50992 -12.38188 -12.24195 -11.96675 -11.74941 -11.53302 -11.46928 -11.40594 -11.28455 -11.12425 -10.57724 -10.17790 -9.81840 -9.35203 -9.06813 -8.01123 -6.17610 0.90297 0.95827 1.36681 1.37812 1.43338 1.50148 1.91471 2.42633 2.65374 2.70972 3.30169 3.38344 3.71941 3.96201 4.02719 4.24003 4.36080 4.37619 4.47518 4.51944 4.53889 4.67655 4.77319 4.83356 4.89129 4.92188 5.01393 5.03452 5.11140 5.12001 5.16424 5.19881 5.38652 5.48678 5.52575 5.56831 5.57809 5.70249 5.74650 5.81936 5.91861 5.98228 6.02538 6.46303 6.56179 6.79255 7.03767 7.11524 7.51111 7.90332 8.96651 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.005627 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.234973 B = 4974.994647 C = 6153.364338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.104 4.104 5 C 0.165 3.835 6 H 0.109 0.891 7 N -0.704 5.704 8 C 0.560 3.440 9 O -0.580 6.580 10 C 0.051 3.949 11 H 0.071 0.929 12 C -0.541 4.541 13 H 0.069 0.931 14 C 0.054 3.946 15 N -0.848 5.848 16 Si 0.929 3.071 17 H -0.257 1.257 18 H -0.302 1.302 19 H -0.288 1.288 20 C -0.035 4.035 21 C -0.087 4.087 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.146 4.146 25 C -0.116 4.116 26 C 0.446 3.554 27 O -0.520 6.520 28 O -0.515 6.515 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.408 0.592 39 H 0.247 0.753 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.103 0.897 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 7.157 0.704 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.142 4.142 5 C 0.057 3.943 6 H 0.127 0.873 7 N -0.356 5.356 8 C 0.350 3.650 9 O -0.459 6.459 10 C 0.030 3.970 11 H 0.089 0.911 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.153 4.153 15 N -0.481 5.481 16 Si 0.758 3.242 17 H -0.181 1.181 18 H -0.229 1.229 19 H -0.215 1.215 20 C -0.036 4.036 21 C -0.105 4.105 22 C -0.172 4.172 23 C -0.160 4.160 24 C -0.164 4.164 25 C -0.135 4.135 26 C 0.286 3.714 27 O -0.407 6.407 28 O -0.328 6.328 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.243 0.757 39 H 0.056 0.944 40 H 0.128 0.872 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -10.150 7.674 0.612 12.739 hybrid contribution 0.558 -1.855 -1.457 2.424 sum -9.592 5.820 -0.845 11.251 Atomic orbital electron populations 1.21781 0.93158 1.02286 1.02532 1.21077 0.96980 0.96138 0.96928 1.21894 1.00122 0.95995 1.02651 1.21889 0.88317 1.02829 1.01130 1.20478 0.98120 0.94963 0.80704 0.87333 1.45542 1.17919 1.39885 1.32302 1.21035 0.79164 0.80518 0.84304 1.90504 1.50807 1.38526 1.66036 1.17952 0.91773 0.95089 0.92232 0.91095 1.20780 1.30591 0.92456 1.14050 0.91334 1.25367 0.94492 0.99108 0.96336 1.70162 1.25689 1.34307 1.17933 0.85944 0.77611 0.83046 0.77648 1.18117 1.22899 1.21460 1.19952 0.97024 0.92403 0.94200 1.21120 0.92898 0.99757 0.96696 1.21295 0.96492 0.97024 1.02346 1.21159 0.99714 0.92674 1.02474 1.21187 0.93742 0.99551 1.01958 1.21045 0.97141 0.95888 0.99394 1.24902 0.76712 0.82897 0.86896 1.90857 1.37301 1.25167 1.87370 1.84470 1.74636 1.55967 1.17695 0.91774 0.92274 0.91915 0.91440 0.94506 0.91426 0.91821 0.90314 0.88000 0.75665 0.94371 0.87208 0.85877 0.84592 0.85255 0.87931 0.72309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.19 71.98 0.66 -1.43 16 2 C -0.09 -1.82 2.86 -10.79 -0.03 -1.86 16 3 C -0.15 -2.98 8.96 71.98 0.64 -2.33 16 4 C -0.10 -2.32 4.19 30.60 0.13 -2.19 16 5 C 0.17 5.43 2.35 44.25 0.10 5.54 16 6 H 0.11 3.80 5.78 -2.39 -0.01 3.78 16 7 N -0.70 -26.97 3.88 -446.10 -1.73 -28.70 16 8 C 0.56 26.19 5.29 87.66 0.46 26.65 16 9 O -0.58 -30.87 13.61 -3.03 -0.04 -30.91 16 10 C 0.05 2.40 2.77 -13.03 -0.04 2.36 16 11 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 12 C -0.54 -27.01 7.11 25.60 0.18 -26.83 16 13 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 14 C 0.05 2.84 4.01 84.65 0.34 3.18 16 15 N -0.85 -48.95 10.90 21.45 0.23 -48.72 16 16 Si 0.93 43.88 29.54 68.60 2.03 45.90 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 C -0.03 -1.69 4.51 -19.87 -0.09 -1.77 16 21 C -0.09 -4.13 8.20 22.27 0.18 -3.95 16 22 C -0.15 -6.37 10.05 22.27 0.22 -6.15 16 23 C -0.14 -5.39 10.05 22.27 0.22 -5.17 16 24 C -0.15 -5.81 10.05 22.27 0.22 -5.59 16 25 C -0.12 -5.28 8.21 22.27 0.18 -5.09 16 26 C 0.45 16.71 7.66 71.24 0.55 17.26 16 27 O -0.52 -25.03 17.08 21.96 0.38 -24.66 16 28 O -0.51 -14.59 13.23 -51.45 -0.68 -15.27 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.51 7.62 -2.39 -0.02 1.49 16 33 H 0.04 0.91 6.46 -2.39 -0.02 0.89 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.96 7.99 -2.39 -0.02 1.94 16 38 H 0.41 14.31 8.49 -92.71 -0.79 13.52 16 39 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.11 5.51 6.05 -2.91 -0.02 5.50 16 41 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 43 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 44 H 0.10 4.61 7.00 -2.91 -0.02 4.59 16 45 H 0.42 8.82 9.10 -74.06 -0.67 8.15 16 Total: -1.00 -72.18 370.79 3.69 -68.49 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: -0.44 Total: 41.24 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 3.95 Total: -7.37 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.50 Total: -77.41 kcal Atomic # 8 Polarization: -70.50 SS G_CDS: -0.35 Total: -70.85 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.18 3.69 -68.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588880723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.350 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds