Wall clock time and date at job start Tue Mar 31 2020 13:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47620 * 2 1 4 4 C 1.50699 * 109.47372 * 239.99726 * 2 1 3 5 5 H 1.08002 * 120.00460 * 241.35007 * 4 2 1 6 6 C 1.37879 * 119.99612 * 61.34456 * 4 2 1 7 7 N 1.31510 * 119.99779 * 193.97546 * 6 4 2 8 8 Si 1.86800 * 120.00057 * 13.98309 * 6 4 2 9 9 H 1.48499 * 109.47201 * 84.54565 * 8 6 4 10 10 H 1.48504 * 109.47096 * 204.54164 * 8 6 4 11 11 H 1.48497 * 109.47046 * 324.54381 * 8 6 4 12 12 C 1.53007 * 109.47211 * 120.00134 * 2 1 3 13 13 N 1.46506 * 109.46765 * 299.99997 * 12 2 1 14 14 C 1.34778 * 119.99899 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99585 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99753 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46682 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47051 * 179.97438 * 17 16 14 19 19 C 1.38368 * 119.84990 * 270.27793 * 18 17 16 20 20 C 1.37940 * 120.14713 * 180.28292 * 19 18 17 21 21 C 1.39630 * 119.85259 * 359.43653 * 20 19 18 22 22 C 1.47718 * 120.15221 * 180.30399 * 21 20 19 23 23 O 1.21467 * 120.00394 * 0.02562 * 22 21 20 24 24 O 1.34713 * 119.99965 * 180.02562 * 22 21 20 25 25 C 1.39629 * 119.69756 * 0.28669 * 21 20 19 26 26 C 1.37944 * 119.84993 * 359.97438 * 25 21 20 27 27 H 1.09003 * 109.46871 * 309.37202 * 1 2 3 28 28 H 1.09003 * 109.47338 * 69.36485 * 1 2 3 29 29 H 1.08996 * 109.47388 * 189.36827 * 1 2 3 30 30 H 1.08998 * 109.47816 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47228 * 299.99914 * 3 2 1 32 32 H 1.09000 * 109.47508 * 59.99657 * 3 2 1 33 33 H 0.97007 * 119.99984 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46900 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.46867 * 59.99709 * 12 2 1 36 36 H 0.97001 * 119.99861 * 359.97438 * 13 12 2 37 37 H 1.08995 * 109.47559 * 59.99288 * 16 14 13 38 38 H 1.09005 * 109.46987 * 299.99337 * 16 14 13 39 39 H 1.09002 * 109.47351 * 59.99887 * 17 16 14 40 40 H 1.08997 * 109.47301 * 299.99747 * 17 16 14 41 41 H 1.08003 * 119.92551 * 0.02562 * 19 18 17 42 42 H 1.08001 * 120.07760 * 179.72377 * 20 19 18 43 43 H 0.96698 * 117.00082 * 180.02562 * 24 22 21 44 44 H 1.08002 * 120.07817 * 180.02562 * 25 21 20 45 45 H 1.07995 * 119.93248 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5459 8 14 1.0276 1.5006 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6696 15 8 2.5749 -1.4769 3.7808 16 6 1.3748 0.2193 4.9000 17 6 1.8849 -0.5018 6.1492 18 6 1.3826 0.2086 7.3797 19 6 2.1301 1.2301 7.9386 20 6 1.6790 1.8806 9.0682 21 6 0.4594 1.5141 9.6409 22 6 -0.0332 2.2108 10.8467 23 8 0.6228 3.1051 11.3421 24 8 -1.2100 1.8544 11.3970 25 6 -0.2926 0.4863 9.0684 26 6 0.1729 -0.1595 7.9418 27 1 -0.3633 0.6519 0.7945 28 1 -0.3634 0.3622 -0.9617 29 1 -0.3634 -1.0139 0.1673 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6980 -0.6299 -4.4268 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 0.2848 0.2186 4.9000 38 1 1.7374 1.2473 4.8999 39 1 2.9749 -0.5014 6.1494 40 1 1.5220 -1.5296 6.1491 41 1 3.0709 1.5159 7.4917 42 1 2.2655 2.6747 9.5061 43 1 -1.4910 2.3394 12.1850 44 1 -1.2370 0.1982 9.5060 45 1 -0.4074 -0.9549 7.4982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:38 Heat of formation + Delta-G solvation = -105.014307 kcal Electronic energy + Delta-G solvation = -25527.250300 eV Core-core repulsion = 21702.632244 eV Total energy + Delta-G solvation = -3824.618055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83501 -39.73167 -39.06239 -36.83537 -36.52145 -34.30162 -33.34992 -31.57139 -31.44486 -30.42034 -26.78740 -26.41640 -25.37893 -24.67618 -23.27253 -22.78473 -21.07658 -20.05700 -19.17186 -18.57455 -17.87999 -17.10360 -16.12874 -16.04188 -15.99309 -15.57946 -15.30814 -15.20556 -15.00547 -14.78601 -13.99916 -13.75111 -13.70882 -13.48019 -13.15110 -12.99695 -12.75411 -12.60124 -12.30831 -12.17955 -12.08118 -11.94299 -11.77804 -11.65810 -11.32424 -11.11213 -11.02117 -10.47517 -10.35369 -10.20892 -10.10685 -9.65849 -9.42834 -9.23361 -9.12039 -8.72226 -8.58683 -8.47810 -6.17770 -4.15185 0.24971 0.95002 2.11376 2.57511 2.90385 3.21023 3.27972 3.31136 3.36048 3.59744 4.32362 4.33546 4.42119 4.53633 4.66578 4.81754 4.90618 4.96272 5.10316 5.12431 5.13480 5.39223 5.46635 5.53980 5.67615 5.74096 5.81795 5.92329 5.93545 6.00866 6.02014 6.02876 6.20738 6.31278 6.42934 6.43600 6.48285 6.58573 6.65252 6.74317 6.92292 7.18026 7.38816 7.44370 7.68666 7.87964 8.40930 8.54589 8.87572 9.45954 10.95242 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.002021 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.400405 B =13854.488059 C =14229.659741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.723 5.723 14 C 0.504 3.496 15 O -0.549 6.549 16 C -0.136 4.136 17 C -0.072 4.072 18 C -0.037 4.037 19 C -0.129 4.129 20 C -0.050 4.050 21 C -0.140 4.140 22 C 0.528 3.472 23 O -0.517 6.517 24 O -0.513 6.513 25 C -0.057 4.057 26 C -0.131 4.131 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.414 0.586 44 H 0.138 0.862 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 6.295 26.346 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.374 5.374 14 C 0.290 3.710 15 O -0.427 6.427 16 C -0.176 4.176 17 C -0.110 4.110 18 C -0.038 4.038 19 C -0.147 4.147 20 C -0.069 4.069 21 C -0.141 4.141 22 C 0.373 3.627 23 O -0.406 6.406 24 O -0.325 6.325 25 C -0.076 4.076 26 C -0.149 4.149 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.273 0.727 44 H 0.156 0.844 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.428 5.571 25.977 27.116 hybrid contribution -0.809 1.757 0.153 1.941 sum -6.237 7.329 26.129 27.845 Atomic orbital electron populations 1.22295 0.97848 0.99814 0.99974 1.18726 0.92511 0.92261 0.93850 1.22359 1.01197 0.98317 0.98571 1.20710 1.34097 1.12331 0.87978 0.90559 1.24986 0.94700 0.97319 0.95815 1.69951 1.48105 1.35890 0.98725 0.87289 0.79323 0.85535 0.75994 1.21369 1.23397 1.17545 1.21511 0.98591 0.95815 0.82182 1.46344 1.52882 1.31859 1.06266 1.20511 0.80779 0.84865 0.84843 1.90695 1.38441 1.26634 1.86974 1.21645 1.02721 1.00801 0.92476 1.20461 1.02247 0.99189 0.89095 1.20347 0.93663 0.94179 0.95571 1.21101 1.00933 0.96474 0.96151 1.21268 0.93502 0.97939 0.94158 1.19018 0.97917 1.00959 0.96236 1.20957 0.78179 0.80322 0.83238 1.90892 1.57225 1.30163 1.62360 1.84558 1.38027 1.63328 1.46560 1.21460 0.98896 0.92857 0.94338 1.21149 0.96248 1.01112 0.96392 0.95949 0.92523 0.93410 0.92796 0.94041 0.95182 0.92544 0.92006 0.91895 0.76886 0.88872 0.88891 0.89544 0.89521 0.84676 0.84492 0.72699 0.84432 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 7.53 37.16 0.28 -2.51 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 3 C -0.15 -2.89 7.52 37.15 0.28 -2.61 16 4 C -0.51 -13.54 8.62 -34.44 -0.30 -13.84 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.07 2.04 5.32 -17.82 -0.09 1.95 16 7 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 8 Si 0.89 20.76 22.79 -169.99 -3.87 16.89 16 9 H -0.29 -6.69 7.10 56.52 0.40 -6.29 16 10 H -0.31 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.25 -5.28 4.65 56.52 0.26 -5.02 16 12 C 0.14 2.72 4.49 -4.03 -0.02 2.70 16 13 N -0.72 -10.92 5.00 -60.29 -0.30 -11.22 16 14 C 0.50 7.27 7.83 -10.99 -0.09 7.19 16 15 O -0.55 -10.09 15.98 5.56 0.09 -10.01 16 16 C -0.14 -1.29 5.68 -27.88 -0.16 -1.45 16 17 C -0.07 -0.66 4.62 -27.88 -0.13 -0.79 16 18 C -0.04 -0.30 5.14 -104.52 -0.54 -0.84 16 19 C -0.13 -1.00 9.68 -39.64 -0.38 -1.39 16 20 C -0.05 -0.42 9.60 -39.17 -0.38 -0.80 16 21 C -0.14 -1.21 5.87 -104.99 -0.62 -1.82 16 22 C 0.53 4.70 8.27 34.60 0.29 4.99 16 23 O -0.52 -6.03 17.13 -19.24 -0.33 -6.36 16 24 O -0.51 -3.05 12.68 -40.53 -0.51 -3.56 16 25 C -0.06 -0.42 9.62 -39.17 -0.38 -0.80 16 26 C -0.13 -0.97 9.68 -39.64 -0.38 -1.35 16 27 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 28 H 0.06 1.20 4.30 -51.93 -0.22 0.97 16 29 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.40 5.12 6.26 -40.82 -0.26 4.87 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 40 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.14 1.08 7.65 -52.49 -0.40 0.68 16 43 H 0.41 0.66 9.11 45.56 0.42 1.07 16 44 H 0.14 0.80 7.61 -52.49 -0.40 0.40 16 45 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -33.59 364.88 -6.97 -40.56 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.62 Total: 4.60 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.69 Total: -10.86 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.47 Total: -36.76 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.75 Total: -19.93 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -3.87 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.59 -6.97 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.454 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds