Wall clock time and date at job start Tue Mar 31 2020 13:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47620 * 2 1 4 4 C 1.50699 * 109.47372 * 239.99726 * 2 1 3 5 5 H 1.08002 * 120.00460 * 241.35007 * 4 2 1 6 6 C 1.37879 * 119.99612 * 61.34456 * 4 2 1 7 7 N 1.31510 * 119.99779 * 193.97546 * 6 4 2 8 8 Si 1.86800 * 120.00057 * 13.98309 * 6 4 2 9 9 H 1.48499 * 109.47201 * 84.54565 * 8 6 4 10 10 H 1.48504 * 109.47096 * 204.54164 * 8 6 4 11 11 H 1.48497 * 109.47046 * 324.54381 * 8 6 4 12 12 C 1.53007 * 109.47211 * 120.00134 * 2 1 3 13 13 N 1.46506 * 109.46765 * 299.99997 * 12 2 1 14 14 C 1.34778 * 119.99899 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99585 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99753 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46682 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47051 * 179.97438 * 17 16 14 19 19 C 1.38368 * 119.84990 * 270.27793 * 18 17 16 20 20 C 1.37940 * 120.14713 * 180.28292 * 19 18 17 21 21 C 1.39630 * 119.85259 * 359.43653 * 20 19 18 22 22 C 1.47718 * 120.15221 * 180.30399 * 21 20 19 23 23 O 1.21467 * 120.00394 * 0.02562 * 22 21 20 24 24 O 1.34713 * 119.99965 * 180.02562 * 22 21 20 25 25 C 1.39629 * 119.69756 * 0.28669 * 21 20 19 26 26 C 1.37944 * 119.84993 * 359.97438 * 25 21 20 27 27 H 1.09003 * 109.46871 * 309.37202 * 1 2 3 28 28 H 1.09003 * 109.47338 * 69.36485 * 1 2 3 29 29 H 1.08996 * 109.47388 * 189.36827 * 1 2 3 30 30 H 1.08998 * 109.47816 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47228 * 299.99914 * 3 2 1 32 32 H 1.09000 * 109.47508 * 59.99657 * 3 2 1 33 33 H 0.97007 * 119.99984 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46900 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.46867 * 59.99709 * 12 2 1 36 36 H 0.97001 * 119.99861 * 359.97438 * 13 12 2 37 37 H 1.08995 * 109.47559 * 59.99288 * 16 14 13 38 38 H 1.09005 * 109.46987 * 299.99337 * 16 14 13 39 39 H 1.09002 * 109.47351 * 59.99887 * 17 16 14 40 40 H 1.08997 * 109.47301 * 299.99747 * 17 16 14 41 41 H 1.08003 * 119.92551 * 0.02562 * 19 18 17 42 42 H 1.08001 * 120.07760 * 179.72377 * 20 19 18 43 43 H 0.96698 * 117.00082 * 180.02562 * 24 22 21 44 44 H 1.08002 * 120.07817 * 180.02562 * 25 21 20 45 45 H 1.07995 * 119.93248 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5459 8 14 1.0276 1.5006 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6696 15 8 2.5749 -1.4769 3.7808 16 6 1.3748 0.2193 4.9000 17 6 1.8849 -0.5018 6.1492 18 6 1.3826 0.2086 7.3797 19 6 2.1301 1.2301 7.9386 20 6 1.6790 1.8806 9.0682 21 6 0.4594 1.5141 9.6409 22 6 -0.0332 2.2108 10.8467 23 8 0.6228 3.1051 11.3421 24 8 -1.2100 1.8544 11.3970 25 6 -0.2926 0.4863 9.0684 26 6 0.1729 -0.1595 7.9418 27 1 -0.3633 0.6519 0.7945 28 1 -0.3634 0.3622 -0.9617 29 1 -0.3634 -1.0139 0.1673 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6980 -0.6299 -4.4268 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 0.2848 0.2186 4.9000 38 1 1.7374 1.2473 4.8999 39 1 2.9749 -0.5014 6.1494 40 1 1.5220 -1.5296 6.1491 41 1 3.0709 1.5159 7.4917 42 1 2.2655 2.6747 9.5061 43 1 -1.4910 2.3394 12.1850 44 1 -1.2370 0.1982 9.5060 45 1 -0.4074 -0.9549 7.4982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:37 Heat of formation + Delta-G solvation = -128.603627 kcal Electronic energy + Delta-G solvation = -25528.273209 eV Core-core repulsion = 21702.632244 eV Total energy + Delta-G solvation = -3825.640965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45683 -40.83771 -39.80997 -38.40063 -37.12112 -35.05482 -34.94199 -33.41190 -31.99918 -31.18902 -28.06063 -27.88997 -27.06069 -25.97493 -23.91326 -23.47360 -21.75532 -21.18763 -20.86453 -19.15791 -18.53393 -18.32783 -17.92866 -16.99973 -16.82596 -16.68446 -16.58092 -16.10448 -16.05893 -15.45574 -15.09992 -14.95763 -14.79554 -14.46253 -14.30936 -14.13471 -13.97360 -13.83443 -13.82296 -13.73595 -12.89709 -12.86709 -12.58506 -12.48108 -12.37886 -12.23783 -12.12182 -11.94175 -11.78410 -11.74403 -11.69366 -11.08415 -10.81985 -10.60605 -10.37347 -9.98012 -9.93242 -9.84165 -8.29375 -6.30928 -0.35942 0.39980 1.37333 1.38576 1.48539 1.51835 1.77328 2.06879 2.35515 2.38135 2.78252 3.06847 3.65894 3.80031 3.99583 4.01385 4.08977 4.10159 4.28539 4.35556 4.35998 4.41587 4.44184 4.53533 4.70973 4.79296 4.85249 4.86427 4.88993 4.93828 4.98128 5.08576 5.10351 5.20435 5.24822 5.25845 5.36804 5.47249 5.54609 5.59164 5.62060 5.74481 5.81953 5.87287 6.31504 6.70692 6.75595 6.94183 7.33736 7.40498 8.87758 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.002021 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.400405 B =13854.488059 C =14229.659741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 C -0.147 4.147 4 C -0.517 4.517 5 H 0.025 0.975 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.283 1.283 10 H -0.317 1.317 11 H -0.201 1.201 12 C 0.157 3.843 13 N -0.713 5.713 14 C 0.503 3.497 15 O -0.594 6.594 16 C -0.124 4.124 17 C -0.067 4.067 18 C -0.039 4.039 19 C -0.129 4.129 20 C -0.060 4.060 21 C -0.155 4.155 22 C 0.532 3.468 23 O -0.553 6.553 24 O -0.505 6.505 25 C -0.054 4.054 26 C -0.131 4.131 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.264 0.736 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.413 0.587 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.135 0.865 43 H 0.433 0.567 44 H 0.154 0.846 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.487 8.783 28.728 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 C -0.204 4.204 4 C -0.555 4.555 5 H 0.044 0.956 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.775 3.225 9 H -0.210 1.210 10 H -0.247 1.247 11 H -0.125 1.125 12 C 0.033 3.967 13 N -0.366 5.366 14 C 0.291 3.709 15 O -0.475 6.475 16 C -0.163 4.163 17 C -0.105 4.105 18 C -0.039 4.039 19 C -0.147 4.147 20 C -0.078 4.078 21 C -0.156 4.156 22 C 0.378 3.622 23 O -0.445 6.445 24 O -0.318 6.318 25 C -0.072 4.072 26 C -0.148 4.148 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.250 0.750 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.165 0.835 42 H 0.153 0.847 43 H 0.295 0.705 44 H 0.172 0.828 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.731 8.081 28.422 30.544 hybrid contribution -0.060 0.817 -0.509 0.965 sum -7.791 8.898 27.913 30.315 Atomic orbital electron populations 1.22212 0.95951 1.00666 1.00943 1.18670 0.93871 0.93131 0.91855 1.22292 1.00917 0.96782 1.00374 1.21051 1.32793 1.11010 0.90669 0.95615 1.25908 0.95505 1.01736 0.95269 1.70122 1.50781 1.38314 0.99393 0.86317 0.79384 0.79770 0.76984 1.21035 1.24682 1.12463 1.20980 0.97183 0.94945 0.83627 1.46112 1.53136 1.32125 1.05198 1.21417 0.79537 0.84213 0.85686 1.90688 1.40399 1.28848 1.87568 1.21659 1.04177 1.01118 0.89347 1.20360 1.01634 0.98945 0.89576 1.20249 0.94067 0.94252 0.95311 1.21230 1.01334 0.96247 0.95898 1.21344 0.93727 0.98225 0.94525 1.19189 0.98344 1.01581 0.96462 1.21052 0.78382 0.79611 0.83113 1.90878 1.58396 1.31800 1.63474 1.84515 1.36592 1.63280 1.47437 1.21624 0.99277 0.92159 0.94138 1.21356 0.96056 1.01220 0.96204 0.91224 0.93785 0.94115 0.93625 0.94815 0.90438 0.92747 0.94227 0.94343 0.74981 0.86161 0.86369 0.90611 0.90329 0.83529 0.84704 0.70518 0.82845 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 7.53 71.98 0.54 -4.52 16 2 C 0.03 1.06 0.50 -52.93 -0.03 1.03 16 3 C -0.15 -5.24 7.52 71.98 0.54 -4.69 16 4 C -0.52 -28.14 8.62 25.60 0.22 -27.92 16 5 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 6 C 0.01 0.73 5.32 84.66 0.45 1.18 16 7 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 8 Si 0.95 42.05 22.79 68.60 1.56 43.61 16 9 H -0.28 -12.36 7.10 99.48 0.71 -11.66 16 10 H -0.32 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.20 -7.40 4.65 99.48 0.46 -6.94 16 12 C 0.16 5.98 4.49 86.38 0.39 6.37 16 13 N -0.71 -19.41 5.00 -463.05 -2.32 -21.73 16 14 C 0.50 13.29 7.83 87.66 0.69 13.98 16 15 O -0.59 -21.53 15.98 -3.03 -0.05 -21.58 16 16 C -0.12 -1.85 5.68 29.85 0.17 -1.68 16 17 C -0.07 -1.06 4.62 29.85 0.14 -0.92 16 18 C -0.04 -0.51 5.14 -19.80 -0.10 -0.61 16 19 C -0.13 -1.72 9.68 22.23 0.22 -1.50 16 20 C -0.06 -0.91 9.60 22.54 0.22 -0.69 16 21 C -0.15 -2.37 5.87 -20.10 -0.12 -2.49 16 22 C 0.53 8.69 8.27 70.33 0.58 9.27 16 23 O -0.55 -12.54 17.13 19.94 0.34 -12.20 16 24 O -0.50 -4.87 12.68 -56.23 -0.71 -5.59 16 25 C -0.05 -0.64 9.62 22.54 0.22 -0.43 16 26 C -0.13 -1.51 9.68 22.23 0.22 -1.29 16 27 H 0.07 1.86 7.13 -2.39 -0.02 1.84 16 28 H 0.04 1.70 4.30 -2.39 -0.01 1.69 16 29 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.27 2.25 -2.38 -0.01 1.26 16 32 H 0.08 2.03 6.86 -2.39 -0.02 2.01 16 33 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.41 8.47 6.26 -92.71 -0.58 7.89 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 40 H 0.08 1.37 8.04 -2.39 -0.02 1.35 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.14 2.04 7.65 -2.91 -0.02 2.01 16 43 H 0.43 0.45 9.11 -74.06 -0.67 -0.23 16 44 H 0.15 1.29 7.61 -2.91 -0.02 1.27 16 45 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -77.88 364.88 2.99 -74.89 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.47 Total: 15.65 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.33 Total: -14.91 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.02 Total: -79.88 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.42 Total: -39.36 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.56 Total: 43.61 kcal Total: -77.88 2.99 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.712 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds