Wall clock time and date at job start Tue Mar 31 2020 12:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47320 * 2 1 4 4 C 1.52999 * 109.47233 * 239.99722 * 2 1 3 5 5 C 1.50701 * 109.46994 * 60.00385 * 4 2 1 6 6 H 1.07994 * 120.00221 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99875 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99666 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00029 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46918 * 89.99305 * 9 7 5 11 11 H 1.48497 * 109.47084 * 209.99666 * 9 7 5 12 12 H 1.48504 * 109.46835 * 330.00048 * 9 7 5 13 13 C 1.53003 * 109.47168 * 119.99678 * 2 1 3 14 14 N 1.46500 * 109.47081 * 300.00217 * 13 2 1 15 15 C 1.34781 * 119.99990 * 179.97438 * 14 13 2 16 16 O 1.21554 * 119.99943 * 0.02562 * 15 14 13 17 17 C 1.47845 * 119.99794 * 179.97438 * 15 14 13 18 18 C 1.39589 * 120.14559 * 359.97438 * 17 15 14 19 19 C 1.37937 * 119.85392 * 180.02562 * 18 17 15 20 20 C 1.38386 * 120.14118 * 359.72970 * 19 18 17 21 21 C 1.38342 * 120.29404 * 0.54582 * 20 19 18 22 22 C 1.50694 * 119.92637 * 179.72480 * 21 20 19 23 23 C 1.50706 * 109.47327 * 269.72779 * 22 21 20 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 22 21 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 22 21 26 26 C 1.37979 * 120.14191 * 359.45057 * 21 20 19 27 27 H 1.08994 * 109.47265 * 300.00170 * 1 2 3 28 28 H 1.08999 * 109.46748 * 60.00043 * 1 2 3 29 29 H 1.09001 * 109.46582 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47427 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46725 * 299.99933 * 3 2 1 32 32 H 1.09003 * 109.47217 * 59.99481 * 3 2 1 33 33 H 1.08998 * 109.47027 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47000 * 299.99811 * 4 2 1 35 35 H 0.97006 * 119.99368 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47267 * 180.02562 * 13 2 1 37 37 H 1.09003 * 109.46984 * 59.99821 * 13 2 1 38 38 H 0.96997 * 120.00130 * 0.02562 * 14 13 2 39 39 H 1.07997 * 120.07444 * 359.97438 * 18 17 15 40 40 H 1.07994 * 119.93037 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.85330 * 180.28830 * 20 19 18 42 42 H 1.08997 * 109.46894 * 149.72979 * 22 21 20 43 43 H 1.09000 * 109.47644 * 29.73127 * 22 21 20 44 44 H 0.96700 * 117.00196 * 179.97438 * 25 23 22 45 45 H 1.08001 * 120.07151 * 180.24874 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3807 7 6 1.8705 -0.4823 -3.7320 8 7 2.6265 -1.5516 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 2.2254 1.4395 -5.6619 11 1 1.0821 -0.5816 -6.3611 12 1 -0.0607 1.0354 -4.9611 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8768 -0.4912 3.6696 16 8 2.5757 -1.4795 3.7812 17 6 1.3844 0.2061 4.8767 18 6 0.5830 1.3422 4.7520 19 6 0.1273 1.9884 5.8822 20 6 0.4585 1.5095 7.1376 21 6 1.2570 0.3874 7.2682 22 6 1.6176 -0.1234 8.6393 23 6 2.8988 0.5254 9.0962 24 8 3.4617 1.3205 8.3815 25 8 3.4153 0.2191 10.2966 26 6 1.7193 -0.2684 6.1457 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 2.8609 -1.8830 -4.7335 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2494 38 1 0.9937 0.7579 2.3564 39 1 0.3210 1.7149 3.7728 40 1 -0.4924 2.8677 5.7872 41 1 0.0953 2.0164 8.0194 42 1 1.7514 -1.2044 8.6007 43 1 0.8179 0.1190 9.3393 44 1 4.2389 0.6604 10.5458 45 1 2.3393 -1.1467 6.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590656310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:35 Heat of formation + Delta-G solvation = -123.652311 kcal Electronic energy + Delta-G solvation = -25972.766330 eV Core-core repulsion = 22147.340070 eV Total energy + Delta-G solvation = -3825.426260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.83911 -40.08421 -38.62969 -37.03940 -36.46615 -33.95787 -33.20650 -32.08109 -31.28498 -28.56238 -27.14765 -26.52751 -26.34011 -24.00688 -23.15418 -22.48364 -21.53895 -20.01474 -18.58536 -18.44672 -17.43777 -16.82584 -16.56620 -16.32547 -16.26885 -15.69069 -15.09808 -14.89809 -14.68497 -14.44192 -13.83634 -13.75753 -13.58171 -13.36215 -13.08687 -12.79016 -12.73525 -12.61435 -12.10087 -12.07311 -11.95372 -11.85791 -11.42621 -11.17032 -11.02514 -10.97643 -10.85891 -10.64807 -10.41724 -10.26504 -9.89539 -9.88998 -9.20925 -9.18979 -9.16597 -8.93440 -8.71904 -8.36297 -6.00272 -4.01586 0.65267 1.01462 1.83726 2.57123 2.98661 3.30709 3.34769 3.37939 3.40060 3.75390 4.10061 4.42115 4.44906 4.60416 4.75217 4.83653 4.91858 4.99826 5.03660 5.26373 5.35184 5.44913 5.56341 5.61236 5.67935 5.73673 6.06707 6.06956 6.11443 6.12222 6.14972 6.21020 6.28984 6.37878 6.52686 6.58753 6.61592 6.74296 7.04413 7.06262 7.11203 7.50786 7.63375 7.70502 7.75767 7.98313 8.35844 8.40981 9.03105 9.61468 11.11152 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.031575 B = 0.002197 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.572460 B =12740.807472 C =13128.500728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.127 3.873 14 N -0.715 5.715 15 C 0.550 3.450 16 O -0.542 6.542 17 C -0.125 4.125 18 C -0.081 4.081 19 C -0.124 4.124 20 C -0.081 4.081 21 C -0.094 4.094 22 C -0.070 4.070 23 C 0.476 3.524 24 O -0.502 6.502 25 O -0.520 6.520 26 C -0.044 4.044 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.411 0.589 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 6.291 27.114 28.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.337 3.663 16 O -0.420 6.420 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.142 4.142 20 C -0.100 4.100 21 C -0.094 4.094 22 C -0.108 4.108 23 C 0.317 3.683 24 O -0.389 6.389 25 O -0.332 6.332 26 C -0.063 4.063 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.270 0.730 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.022 5.484 26.699 27.715 hybrid contribution 0.051 1.134 -0.864 1.426 sum -4.971 6.618 25.834 27.128 Atomic orbital electron populations 1.21770 0.95260 1.01238 1.00215 1.20915 0.95484 0.95876 0.95041 1.21773 1.00657 0.95870 1.00211 1.19092 0.96400 0.95238 0.89424 1.21175 1.31207 1.12055 0.90497 0.92252 1.25023 0.95353 0.95079 0.99110 1.69967 1.36949 1.22979 1.23443 0.86640 0.79167 0.79397 0.83043 1.20780 1.21351 1.19955 1.21682 0.99069 0.96078 0.82685 1.46136 1.52864 1.31852 1.05760 1.18242 0.80591 0.84152 0.83354 1.90765 1.38150 1.26249 1.86863 1.20028 1.01355 0.97521 0.93937 1.21402 0.95317 0.93897 0.99322 1.21056 1.00855 1.00348 0.91980 1.21150 0.96339 0.94564 0.97909 1.19157 0.99976 0.97136 0.93112 1.20241 0.93186 1.02443 0.94889 1.23396 0.86587 0.79709 0.78558 1.90788 1.60729 1.32862 1.54527 1.84513 1.44176 1.67960 1.36571 1.21092 0.95961 0.98808 0.90423 0.95349 0.91331 0.93274 0.93270 0.91338 0.95341 0.96298 0.96286 0.93036 0.91605 0.91581 0.76592 0.85369 0.85108 0.85671 0.86334 0.86459 0.72954 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.95 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 14 N -0.71 -10.77 4.91 -61.25 -0.30 -11.07 16 15 C 0.55 8.79 7.77 -12.33 -0.10 8.69 16 16 O -0.54 -10.58 16.35 5.32 0.09 -10.49 16 17 C -0.13 -1.61 5.87 -104.97 -0.62 -2.23 16 18 C -0.08 -0.82 9.54 -39.19 -0.37 -1.20 16 19 C -0.12 -1.05 10.03 -39.64 -0.40 -1.45 16 20 C -0.08 -0.66 9.69 -39.49 -0.38 -1.05 16 21 C -0.09 -0.85 4.37 -104.68 -0.46 -1.31 16 22 C -0.07 -0.43 5.94 -29.04 -0.17 -0.60 16 23 C 0.48 3.91 8.32 36.01 0.30 4.21 16 24 O -0.50 -6.21 16.79 -18.75 -0.31 -6.52 16 25 O -0.52 -3.00 13.42 -39.24 -0.53 -3.52 16 26 C -0.04 -0.52 9.24 -39.18 -0.36 -0.88 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 32 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.40 5.03 4.20 -40.82 -0.17 4.86 16 39 H 0.13 1.10 6.41 -52.49 -0.34 0.76 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.55 8.08 -51.93 -0.42 0.13 16 43 H 0.12 0.39 8.08 -51.93 -0.42 -0.03 16 44 H 0.41 0.88 9.10 45.56 0.41 1.30 16 45 H 0.14 1.62 7.65 -52.49 -0.40 1.22 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -35.08 374.18 -7.79 -42.86 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.55 Total: 3.05 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.54 Total: -10.44 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.44 Total: -36.74 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.75 Total: -20.53 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.08 -7.79 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.791 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds