Wall clock time and date at job start Tue Mar 31 2020 12:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47320 * 2 1 4 4 C 1.52999 * 109.47233 * 239.99722 * 2 1 3 5 5 C 1.50701 * 109.46994 * 60.00385 * 4 2 1 6 6 H 1.07994 * 120.00221 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99875 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99666 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00029 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46918 * 89.99305 * 9 7 5 11 11 H 1.48497 * 109.47084 * 209.99666 * 9 7 5 12 12 H 1.48504 * 109.46835 * 330.00048 * 9 7 5 13 13 C 1.53003 * 109.47168 * 119.99678 * 2 1 3 14 14 N 1.46500 * 109.47081 * 300.00217 * 13 2 1 15 15 C 1.34781 * 119.99990 * 179.97438 * 14 13 2 16 16 O 1.21554 * 119.99943 * 0.02562 * 15 14 13 17 17 C 1.47845 * 119.99794 * 179.97438 * 15 14 13 18 18 C 1.39589 * 120.14559 * 359.97438 * 17 15 14 19 19 C 1.37937 * 119.85392 * 180.02562 * 18 17 15 20 20 C 1.38386 * 120.14118 * 359.72970 * 19 18 17 21 21 C 1.38342 * 120.29404 * 0.54582 * 20 19 18 22 22 C 1.50694 * 119.92637 * 179.72480 * 21 20 19 23 23 C 1.50706 * 109.47327 * 269.72779 * 22 21 20 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 22 21 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 22 21 26 26 C 1.37979 * 120.14191 * 359.45057 * 21 20 19 27 27 H 1.08994 * 109.47265 * 300.00170 * 1 2 3 28 28 H 1.08999 * 109.46748 * 60.00043 * 1 2 3 29 29 H 1.09001 * 109.46582 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47427 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46725 * 299.99933 * 3 2 1 32 32 H 1.09003 * 109.47217 * 59.99481 * 3 2 1 33 33 H 1.08998 * 109.47027 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47000 * 299.99811 * 4 2 1 35 35 H 0.97006 * 119.99368 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47267 * 180.02562 * 13 2 1 37 37 H 1.09003 * 109.46984 * 59.99821 * 13 2 1 38 38 H 0.96997 * 120.00130 * 0.02562 * 14 13 2 39 39 H 1.07997 * 120.07444 * 359.97438 * 18 17 15 40 40 H 1.07994 * 119.93037 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.85330 * 180.28830 * 20 19 18 42 42 H 1.08997 * 109.46894 * 149.72979 * 22 21 20 43 43 H 1.09000 * 109.47644 * 29.73127 * 22 21 20 44 44 H 0.96700 * 117.00196 * 179.97438 * 25 23 22 45 45 H 1.08001 * 120.07151 * 180.24874 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3807 7 6 1.8705 -0.4823 -3.7320 8 7 2.6265 -1.5516 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 2.2254 1.4395 -5.6619 11 1 1.0821 -0.5816 -6.3611 12 1 -0.0607 1.0354 -4.9611 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8768 -0.4912 3.6696 16 8 2.5757 -1.4795 3.7812 17 6 1.3844 0.2061 4.8767 18 6 0.5830 1.3422 4.7520 19 6 0.1273 1.9884 5.8822 20 6 0.4585 1.5095 7.1376 21 6 1.2570 0.3874 7.2682 22 6 1.6176 -0.1234 8.6393 23 6 2.8988 0.5254 9.0962 24 8 3.4617 1.3205 8.3815 25 8 3.4153 0.2191 10.2966 26 6 1.7193 -0.2684 6.1457 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 2.8609 -1.8830 -4.7335 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2494 38 1 0.9937 0.7579 2.3564 39 1 0.3210 1.7149 3.7728 40 1 -0.4924 2.8677 5.7872 41 1 0.0953 2.0164 8.0194 42 1 1.7514 -1.2044 8.6007 43 1 0.8179 0.1190 9.3393 44 1 4.2389 0.6604 10.5458 45 1 2.3393 -1.1467 6.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590656310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:34 Heat of formation + Delta-G solvation = -146.960612 kcal Electronic energy + Delta-G solvation = -25973.777054 eV Core-core repulsion = 22147.340070 eV Total energy + Delta-G solvation = -3826.436983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58821 -41.07338 -39.60754 -38.54195 -37.06739 -35.39041 -34.35605 -33.65528 -32.11236 -29.37340 -28.97815 -27.97802 -27.70045 -25.40523 -24.19907 -23.63804 -22.28715 -21.14119 -19.95366 -19.07434 -18.57156 -18.33858 -17.46563 -17.37048 -17.05551 -16.71781 -16.46355 -16.45767 -15.70645 -15.60107 -15.20138 -14.91577 -14.65687 -14.46255 -14.25567 -14.01848 -13.94573 -13.83159 -13.26898 -13.23329 -12.87427 -12.73253 -12.64321 -12.60352 -12.49192 -12.34914 -12.25004 -12.11064 -11.97984 -11.66344 -11.55759 -11.26888 -10.93615 -10.82967 -10.51540 -10.24866 -9.89896 -9.82586 -8.13932 -6.21858 -0.16347 0.29756 1.24442 1.42873 1.43405 1.53791 1.76684 2.10775 2.26706 2.44990 2.92948 3.20495 3.51154 3.64043 3.89224 3.94080 4.05630 4.08643 4.19492 4.25642 4.29600 4.46459 4.56087 4.62769 4.66910 4.69112 4.75464 4.86836 4.94196 5.01125 5.07485 5.11148 5.30066 5.33955 5.38939 5.43898 5.44836 5.49210 5.51693 5.55996 5.65155 5.78991 5.89416 5.90354 6.29602 6.50312 6.93176 7.01362 7.14677 7.45812 8.98634 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.031575 B = 0.002197 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.572460 B =12740.807472 C =13128.500728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.140 3.860 14 N -0.702 5.702 15 C 0.548 3.452 16 O -0.589 6.589 17 C -0.152 4.152 18 C -0.083 4.083 19 C -0.122 4.122 20 C -0.075 4.075 21 C -0.096 4.096 22 C -0.070 4.070 23 C 0.481 3.519 24 O -0.552 6.552 25 O -0.513 6.513 26 C -0.064 4.064 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.069 0.931 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.412 0.588 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.132 0.868 43 H 0.155 0.845 44 H 0.427 0.573 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 9.208 29.352 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.181 4.181 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.016 3.984 14 N -0.354 5.354 15 C 0.337 3.663 16 O -0.471 6.471 17 C -0.155 4.155 18 C -0.102 4.102 19 C -0.139 4.139 20 C -0.093 4.093 21 C -0.096 4.096 22 C -0.107 4.107 23 C 0.325 3.675 24 O -0.442 6.442 25 O -0.327 6.327 26 C -0.083 4.083 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.252 0.748 39 H 0.163 0.837 40 H 0.182 0.818 41 H 0.178 0.822 42 H 0.150 0.850 43 H 0.173 0.827 44 H 0.288 0.712 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.675 8.433 28.975 31.138 hybrid contribution 0.899 0.205 -1.394 1.671 sum -6.776 8.639 27.581 29.686 Atomic orbital electron populations 1.21708 0.93361 1.01127 1.01778 1.20712 0.96881 0.96264 0.92581 1.21716 0.99919 0.94652 1.01770 1.18975 0.94252 0.94265 0.92329 1.21585 1.30423 1.12072 0.90955 0.90758 1.25984 0.95730 0.95885 1.02830 1.70131 1.38824 1.24980 1.24079 0.85510 0.79208 0.78047 0.78658 1.20220 1.21646 1.18185 1.21279 0.97811 0.95534 0.83751 1.45877 1.52875 1.32026 1.04654 1.18843 0.79585 0.83567 0.84301 1.90732 1.40360 1.28489 1.87533 1.19839 1.03934 0.99249 0.92506 1.21620 0.94593 0.92886 1.01069 1.21484 1.00296 1.00823 0.91340 1.21652 0.94765 0.93593 0.99275 1.19439 0.99459 0.97160 0.93521 1.20389 0.93329 1.02939 0.93998 1.23744 0.86680 0.78637 0.78395 1.90777 1.62250 1.35290 1.55915 1.84484 1.45063 1.67745 1.35366 1.21147 0.96727 0.99125 0.91336 0.91171 0.92249 0.94317 0.94551 0.92167 0.91259 0.99684 0.99499 0.93203 0.93647 0.93306 0.74826 0.83705 0.81818 0.82230 0.85041 0.82722 0.71174 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.47 16 3 C -0.12 -4.19 8.05 71.98 0.58 -3.61 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -27.49 7.65 25.60 0.20 -27.29 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 8 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 9 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 C 0.14 5.23 4.56 86.38 0.39 5.62 16 14 N -0.70 -20.92 4.91 -465.96 -2.29 -23.21 16 15 C 0.55 17.92 7.77 86.79 0.67 18.60 16 16 O -0.59 -24.42 16.35 -3.88 -0.06 -24.49 16 17 C -0.15 -3.84 5.87 -20.09 -0.12 -3.96 16 18 C -0.08 -1.48 9.54 22.52 0.21 -1.26 16 19 C -0.12 -1.57 10.03 22.23 0.22 -1.34 16 20 C -0.07 -0.93 9.69 22.33 0.22 -0.71 16 21 C -0.10 -1.54 4.37 -19.90 -0.09 -1.63 16 22 C -0.07 -0.67 5.94 29.10 0.17 -0.50 16 23 C 0.48 7.05 8.32 71.24 0.59 7.64 16 24 O -0.55 -13.19 16.79 21.97 0.37 -12.82 16 25 O -0.51 -4.82 13.42 -51.35 -0.69 -5.51 16 26 C -0.06 -1.51 9.24 22.53 0.21 -1.30 16 27 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 28 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 2.15 6.62 -2.39 -0.02 2.14 16 32 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 33 H -0.02 -0.88 8.14 -2.39 -0.02 -0.89 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.41 9.48 4.20 -92.71 -0.39 9.09 16 39 H 0.15 1.95 6.41 -2.91 -0.02 1.93 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.13 0.95 8.08 -2.39 -0.02 0.94 16 43 H 0.16 0.33 8.08 -2.39 -0.02 0.31 16 44 H 0.43 1.09 9.10 -74.06 -0.67 0.42 16 45 H 0.12 3.05 7.65 -2.91 -0.02 3.03 16 Total: -1.00 -81.41 374.18 4.00 -77.40 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -0.04 Total: 13.69 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 4.40 Total: -13.55 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.00 Total: -80.43 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.38 Total: -42.81 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -81.41 4.00 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.557 kcal (2) G-P(sol) polarization free energy of solvation -81.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds