Wall clock time and date at job start Tue Mar 31 2020 13:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47120 * 2 1 4 4 C 1.53001 * 109.46700 * 239.99807 * 2 1 3 5 5 H 1.08999 * 109.46973 * 60.00886 * 4 2 1 6 6 N 1.46494 * 109.47476 * 300.00097 * 4 2 1 7 7 C 1.34775 * 119.99998 * 155.00336 * 6 4 2 8 8 O 1.21269 * 120.00168 * 359.97438 * 7 6 4 9 9 C 1.50707 * 119.99786 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47007 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46991 * 305.37321 * 10 9 7 12 12 C 1.50706 * 109.46807 * 65.37208 * 10 9 7 13 13 H 1.08001 * 119.99946 * 34.61304 * 12 10 9 14 14 C 1.37877 * 119.99970 * 214.61857 * 12 10 9 15 15 N 1.31515 * 119.99945 * 186.44761 * 14 12 10 16 16 Si 1.86800 * 119.99768 * 6.44731 * 14 12 10 17 17 H 1.48499 * 109.47029 * 85.00864 * 16 14 12 18 18 H 1.48500 * 109.46925 * 205.00555 * 16 14 12 19 19 H 1.48497 * 109.47508 * 325.00908 * 16 14 12 20 20 C 1.50701 * 109.46903 * 185.36942 * 10 9 7 21 21 C 1.38236 * 120.00128 * 296.35972 * 20 10 9 22 22 C 1.38229 * 120.00116 * 179.79161 * 21 20 10 23 23 C 1.38241 * 119.99818 * 0.43750 * 22 21 20 24 24 C 1.38237 * 119.99726 * 359.81831 * 23 22 21 25 25 C 1.38232 * 120.00347 * 359.97438 * 24 23 22 26 26 C 1.50702 * 109.46837 * 179.97438 * 4 2 1 27 27 O 1.20832 * 119.99944 * 120.00328 * 26 4 2 28 28 O 1.34226 * 120.00279 * 300.00595 * 26 4 2 29 29 H 1.09000 * 109.46775 * 300.00195 * 1 2 3 30 30 H 1.08996 * 109.47344 * 59.99799 * 1 2 3 31 31 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47344 * 120.00201 * 2 1 3 33 33 H 1.08998 * 109.46974 * 60.00403 * 3 2 1 34 34 H 1.09007 * 109.46933 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46898 * 300.00059 * 3 2 1 36 36 H 0.97007 * 119.99715 * 334.99588 * 6 4 2 37 37 H 1.08997 * 109.47103 * 299.99933 * 9 7 6 38 38 H 1.09006 * 109.46889 * 59.99946 * 9 7 6 39 39 H 0.97001 * 119.99615 * 180.02562 * 15 14 12 40 40 H 1.08004 * 119.99549 * 0.02562 * 21 20 10 41 41 H 1.07997 * 120.00697 * 180.27418 * 22 21 20 42 42 H 1.08003 * 119.99972 * 179.83229 * 23 22 21 43 43 H 1.08005 * 119.99801 * 179.97438 * 24 23 22 44 44 H 1.07996 * 119.99836 * 180.02562 * 25 24 23 45 45 H 0.96707 * 117.00054 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6767 -0.2074 -2.1392 6 7 1.5516 -2.1025 -1.2493 7 6 1.4229 -2.7717 -2.4120 8 8 1.7109 -2.2304 -3.4583 9 6 0.9210 -4.1928 -2.4119 10 6 0.8688 -4.7153 -3.8490 11 1 0.2722 -4.0382 -4.4603 12 6 2.2671 -4.7946 -4.4057 13 1 3.0916 -5.0567 -3.7593 14 6 2.4936 -4.5325 -5.7402 15 7 3.6889 -4.7241 -6.2543 16 14 1.1029 -3.9051 -6.8180 17 1 1.0057 -2.4288 -6.6912 18 1 1.3733 -4.2636 -8.2335 19 1 -0.1760 -4.5242 -6.3863 20 6 0.2442 -6.0867 -3.8625 21 6 0.8681 -7.1367 -3.2151 22 6 0.2930 -8.3937 -3.2238 23 6 -0.9014 -8.6027 -3.8875 24 6 -1.5226 -7.5538 -4.5394 25 6 -0.9497 -6.2958 -4.5271 26 6 3.5469 -0.7208 -1.2496 27 8 4.1514 -1.7670 -1.2496 28 8 4.2177 0.4419 -1.2499 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.3210 -2.5353 -0.4123 37 1 1.5939 -4.8157 -1.8227 38 1 -0.0781 -4.2252 -1.9774 39 1 3.8483 -4.5393 -7.1931 40 1 1.8030 -6.9741 -2.6993 41 1 0.7781 -9.2131 -2.7143 42 1 -1.3494 -9.5854 -3.8966 43 1 -2.4556 -7.7171 -5.0584 44 1 -1.4352 -5.4764 -5.0360 45 1 5.1835 0.3915 -1.2497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591001060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:40 Heat of formation + Delta-G solvation = -110.753356 kcal Electronic energy + Delta-G solvation = -27468.496873 eV Core-core repulsion = 23643.629954 eV Total energy + Delta-G solvation = -3824.866919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57004 -39.05813 -38.33221 -36.50748 -35.98897 -34.07604 -32.94309 -31.61780 -30.18537 -29.23665 -27.86687 -27.09636 -25.51632 -22.74384 -22.17178 -21.81556 -20.52273 -20.20572 -19.12202 -18.03629 -17.04336 -16.84852 -16.55654 -16.02687 -15.82722 -15.41807 -14.59590 -14.43487 -14.10446 -13.96338 -13.75966 -13.69314 -13.13972 -12.91103 -12.79281 -12.68364 -12.47931 -12.34752 -12.27862 -11.87297 -11.85067 -11.63071 -11.34398 -11.05341 -10.94681 -10.87167 -10.74655 -10.52269 -10.41233 -10.32652 -9.85741 -9.58532 -9.21883 -9.02784 -8.84930 -8.36213 -8.18004 -7.79537 -5.93943 -3.90380 2.12330 2.17040 2.39229 2.85245 3.44198 3.46018 3.50103 3.54053 3.63868 4.42341 4.54971 4.61102 4.69155 4.93272 5.21289 5.28132 5.33902 5.41929 5.50271 5.53983 5.58453 5.63058 5.70666 5.71844 5.77141 5.89289 5.93941 6.02417 6.07987 6.10500 6.24437 6.27059 6.34913 6.60120 6.63194 6.64677 6.71469 6.85538 7.02787 7.16817 7.29427 7.60231 7.74773 7.85489 7.88404 8.05638 8.57683 8.89733 9.07319 9.70743 11.19155 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.004208 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.983946 B = 6651.612034 C = 7494.269962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.157 4.157 4 C 0.164 3.836 5 H 0.123 0.877 6 N -0.727 5.727 7 C 0.521 3.479 8 O -0.496 6.496 9 C -0.115 4.115 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.486 4.486 13 H 0.071 0.929 14 C 0.084 3.916 15 N -0.898 5.898 16 Si 0.873 3.127 17 H -0.273 1.273 18 H -0.296 1.296 19 H -0.261 1.261 20 C -0.038 4.038 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.150 4.150 24 C -0.127 4.127 25 C -0.136 4.136 26 C 0.460 3.540 27 O -0.492 6.492 28 O -0.515 6.515 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.400 0.600 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.261 0.739 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 7.411 14.640 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.214 4.214 4 C 0.056 3.944 5 H 0.140 0.860 6 N -0.383 5.383 7 C 0.309 3.691 8 O -0.367 6.367 9 C -0.156 4.156 10 C 0.037 3.963 11 H 0.067 0.933 12 C -0.523 4.523 13 H 0.090 0.910 14 C -0.118 4.118 15 N -0.536 5.536 16 Si 0.701 3.299 17 H -0.199 1.199 18 H -0.223 1.223 19 H -0.185 1.185 20 C -0.038 4.038 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.145 4.145 25 C -0.154 4.154 26 C 0.299 3.701 27 O -0.377 6.377 28 O -0.328 6.328 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.773 7.521 13.637 17.405 hybrid contribution 0.175 -0.048 -0.461 0.496 sum -7.598 7.474 13.176 16.946 Atomic orbital electron populations 1.21824 0.93491 1.02602 1.02303 1.21290 0.97212 0.97198 0.95727 1.22042 1.03345 0.93996 1.02052 1.20422 0.85848 0.85960 1.02150 0.85972 1.45970 1.69013 1.12844 1.10429 1.20931 0.76889 0.88669 0.82628 1.90740 1.46506 1.68403 1.31061 1.21676 1.00245 0.91857 1.01777 1.18124 0.98105 0.88645 0.91431 0.93288 1.20597 0.90150 1.46694 0.94880 0.91050 1.24900 0.95151 0.94009 0.97732 1.69909 1.21745 1.48420 1.13487 0.86937 0.83679 0.80226 0.79060 1.19903 1.22317 1.18546 1.20725 0.91619 0.98438 0.93060 1.20971 0.99136 0.92088 0.99732 1.21049 0.96066 0.97040 1.00389 1.20859 0.96936 0.98163 1.00824 1.20959 0.99707 0.93492 1.00309 1.21143 0.96402 0.96857 1.01030 1.24249 0.92415 0.81220 0.72230 1.90776 1.70027 1.33205 1.43732 1.84606 1.26285 1.36014 1.85854 0.92107 0.92081 0.91974 0.90380 0.92322 0.90011 0.92115 0.76553 0.89455 0.91141 0.92917 0.86265 0.87211 0.87456 0.87409 0.87037 0.73901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.04 37.16 0.34 -0.82 16 2 C -0.10 -0.87 2.55 -90.62 -0.23 -1.10 16 3 C -0.16 -1.29 8.67 37.16 0.32 -0.97 16 4 C 0.16 2.20 2.09 -69.08 -0.14 2.05 16 5 H 0.12 1.79 7.58 -51.93 -0.39 1.40 16 6 N -0.73 -10.59 3.92 -54.94 -0.22 -10.80 16 7 C 0.52 10.21 7.41 -10.98 -0.08 10.13 16 8 O -0.50 -12.19 14.66 5.57 0.08 -12.11 16 9 C -0.12 -2.16 4.94 -27.88 -0.14 -2.30 16 10 C 0.06 1.30 1.28 -92.92 -0.12 1.18 16 11 H 0.05 1.19 4.79 -51.93 -0.25 0.94 16 12 C -0.49 -13.71 6.94 -34.44 -0.24 -13.95 16 13 H 0.07 2.22 8.06 -52.49 -0.42 1.79 16 14 C 0.08 2.53 5.47 -17.82 -0.10 2.44 16 15 N -0.90 -28.79 13.96 55.43 0.77 -28.01 16 16 Si 0.87 23.08 27.04 -169.99 -4.60 18.49 16 17 H -0.27 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 19 H -0.26 -6.34 5.15 56.52 0.29 -6.05 16 20 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 21 C -0.10 -2.01 8.87 -39.59 -0.35 -2.36 16 22 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 23 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 25 C -0.14 -2.69 9.13 -39.59 -0.36 -3.05 16 26 C 0.46 7.05 7.59 36.01 0.27 7.32 16 27 O -0.49 -9.78 17.08 -18.76 -0.32 -10.10 16 28 O -0.52 -5.91 10.34 -39.25 -0.41 -6.32 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.72 5.32 -51.93 -0.28 0.45 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.40 4.51 8.39 -40.82 -0.34 4.16 16 37 H 0.09 1.58 7.80 -51.93 -0.41 1.17 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 40 H 0.12 2.36 7.77 -52.48 -0.41 1.95 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.11 2.16 6.96 -52.49 -0.37 1.80 16 45 H 0.40 3.21 9.10 45.56 0.41 3.63 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -37.63 369.78 -7.52 -45.14 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.88 Total: 8.91 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.52 Total: -10.76 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.56 Total: -38.82 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.64 Total: -28.53 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.60 Total: 18.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.63 -7.52 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591001060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.610 kcal (2) G-P(sol) polarization free energy of solvation -37.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds