Wall clock time and date at job start Tue Mar 31 2020 13:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 C 1.52996 * 109.46972 * 299.99854 * 3 2 1 5 5 N 1.46500 * 109.47249 * 299.99946 * 4 3 2 6 6 C 1.34777 * 120.00084 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99665 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00075 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.46862 * 60.01098 * 8 6 5 10 10 C 1.52997 * 109.47466 * 300.00543 * 8 6 5 11 11 C 1.50706 * 109.47178 * 180.02562 * 8 6 5 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 6 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 6 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 C 1.50698 * 109.46650 * 180.02562 * 3 2 1 20 20 O 1.20824 * 120.00091 * 359.97438 * 19 3 2 21 21 O 1.34228 * 119.99932 * 180.02562 * 19 3 2 22 22 C 1.50697 * 109.47106 * 59.99896 * 3 2 1 23 23 C 1.38231 * 120.00052 * 239.72331 * 22 3 2 24 24 C 1.38236 * 119.99858 * 179.81491 * 23 22 3 25 25 C 1.38235 * 120.00161 * 0.39484 * 24 23 22 26 26 C 1.38227 * 119.99827 * 359.86048 * 25 24 23 27 27 C 1.38235 * 119.99715 * 60.00197 * 22 3 2 28 28 H 1.09002 * 109.46838 * 59.99590 * 1 2 3 29 29 H 1.09001 * 109.47600 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47006 * 300.00093 * 1 2 3 31 31 H 1.08996 * 109.46698 * 239.99906 * 2 1 3 32 32 H 1.09002 * 109.47097 * 119.99925 * 2 1 3 33 33 H 1.09001 * 109.46997 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47054 * 60.00300 * 4 3 2 35 35 H 0.96996 * 120.00280 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.47153 * 59.99773 * 10 8 6 37 37 H 1.09001 * 109.46832 * 299.99964 * 10 8 6 38 38 H 1.09004 * 109.47261 * 179.97438 * 10 8 6 39 39 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 40 40 H 0.96693 * 117.00388 * 180.02562 * 21 19 3 41 41 H 1.07996 * 120.00050 * 0.02562 * 23 22 3 42 42 H 1.07998 * 119.99930 * 180.23506 * 24 23 22 43 43 H 1.08004 * 120.00165 * 179.83801 * 25 24 23 44 44 H 1.08001 * 120.00060 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.00473 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 7 2.0184 1.4731 -2.4454 6 6 1.6924 1.9332 -3.6695 7 8 0.9951 2.9193 -3.7808 8 6 2.1943 1.2225 -4.8999 9 1 1.8307 0.1949 -4.8996 10 6 3.7242 1.2223 -4.9005 11 6 1.6920 1.9330 -6.1305 12 1 1.0718 2.8115 -6.0313 13 6 2.0252 1.4619 -7.3827 14 7 2.7808 0.3924 -7.5034 15 14 1.4032 2.3430 -8.9079 16 1 0.5792 3.5104 -8.5038 17 1 2.5586 2.8093 -9.7159 18 1 0.5779 1.4102 -9.7166 19 6 3.5470 1.4424 -0.0006 20 8 4.1511 0.3960 -0.0006 21 8 4.2182 2.6048 -0.0002 22 6 1.5377 2.1529 1.2304 23 6 0.7477 3.2801 1.1036 24 6 0.2838 3.9295 2.2323 25 6 0.6165 3.4565 3.4878 26 6 1.4109 2.3323 3.6146 27 6 1.8717 1.6806 2.4859 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8938 3.1912 -1.2495 34 1 0.4401 2.1637 -1.2492 35 1 2.5758 0.6843 -2.3564 36 1 4.0878 0.7087 -4.0105 37 1 4.0877 2.2499 -4.9009 38 1 4.0872 0.7078 -5.7903 39 1 3.0149 0.0608 -8.3844 40 1 5.1838 2.5542 -0.0010 41 1 0.4902 3.6515 0.1227 42 1 -0.3366 4.8080 2.1332 43 1 0.2562 3.9654 4.3697 44 1 1.6712 1.9630 4.5955 45 1 2.4922 0.8024 2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595135446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:11 Heat of formation + Delta-G solvation = -113.207372 kcal Electronic energy + Delta-G solvation = -27711.467880 eV Core-core repulsion = 23886.494547 eV Total energy + Delta-G solvation = -3824.973333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30694 -39.31436 -38.73946 -36.63737 -36.01642 -33.72597 -33.14683 -31.34328 -30.95038 -30.45130 -28.36698 -25.68287 -25.11246 -23.21756 -22.94419 -22.45928 -21.91176 -19.52918 -19.45822 -18.12639 -17.39910 -16.89587 -16.37818 -16.16088 -15.40825 -15.33693 -15.19236 -14.88223 -14.59930 -14.40264 -14.11421 -13.86795 -13.53691 -13.14437 -12.93383 -12.79991 -12.62330 -12.52964 -12.16714 -11.86130 -11.70758 -11.58423 -11.47959 -11.32922 -11.02252 -10.96187 -10.80648 -10.71455 -10.64767 -10.52336 -10.24309 -9.95244 -9.14583 -8.99031 -8.95366 -8.64545 -8.51881 -8.32753 -6.01921 -4.05174 1.04790 1.17664 2.05749 2.84128 3.33142 3.40631 3.48419 3.54623 3.70840 3.73012 4.33386 4.38912 4.49550 4.55560 4.76855 4.77765 4.91656 5.02762 5.16128 5.27095 5.31103 5.31609 5.39029 5.56158 5.65396 5.72043 5.77758 5.80451 5.90433 6.02402 6.17195 6.21212 6.27749 6.29160 6.33693 6.37721 6.63078 6.73901 6.83657 6.91333 6.98359 7.48128 7.75394 7.77124 7.98313 8.12917 8.41321 9.04212 9.20074 9.60413 11.05763 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.003334 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.624198 B = 8396.495850 C = 8846.609750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.018 4.018 4 C 0.128 3.872 5 N -0.750 5.750 6 C 0.522 3.478 7 O -0.543 6.543 8 C 0.029 3.971 9 H 0.053 0.947 10 C -0.132 4.132 11 C -0.500 4.500 12 H 0.075 0.925 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.494 3.506 20 O -0.508 6.508 21 O -0.505 6.505 22 C -0.066 4.066 23 C -0.105 4.105 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.395 0.605 36 H 0.010 0.990 37 H 0.031 0.969 38 H 0.094 0.906 39 H 0.260 0.740 40 H 0.410 0.590 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 1.549 22.793 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.019 4.019 4 C 0.004 3.996 5 N -0.406 5.406 6 C 0.312 3.688 7 O -0.418 6.418 8 C 0.008 3.992 9 H 0.071 0.929 10 C -0.190 4.190 11 C -0.538 4.538 12 H 0.093 0.907 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.727 3.273 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.336 3.664 20 O -0.396 6.396 21 O -0.316 6.316 22 C -0.067 4.067 23 C -0.123 4.123 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.136 4.136 27 C -0.129 4.129 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.230 0.770 36 H 0.029 0.971 37 H 0.050 0.950 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.269 0.731 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.698 1.914 22.547 22.692 hybrid contribution 0.787 -0.052 -0.694 1.050 sum -0.912 1.862 21.854 21.952 Atomic orbital electron populations 1.21843 0.94181 1.02419 1.02633 1.21497 0.96934 0.91478 1.03944 1.19751 0.87403 0.99150 0.95646 1.21387 1.00077 0.96143 0.82002 1.46405 1.55852 1.32790 1.05514 1.21983 0.78340 0.84230 0.84202 1.90532 1.37863 1.26739 1.86699 1.18879 0.94119 0.96881 0.89283 0.92944 1.21743 0.96585 0.99774 1.00918 1.21184 1.30933 1.12771 0.88942 0.90675 1.24954 0.95123 0.95072 0.99130 1.69880 1.37167 1.23112 1.23430 0.86405 0.78608 0.79788 0.82497 1.19544 1.21082 1.21061 1.23059 0.90923 0.81162 0.71282 1.90730 1.70173 1.33144 1.45536 1.84547 1.26558 1.35472 1.85016 1.19202 0.99039 0.96014 0.92439 1.21258 0.96868 0.94415 0.99740 1.21178 0.99871 0.99936 0.92312 1.21196 0.98295 0.96634 0.97553 1.21076 0.98222 0.96015 0.98261 1.20974 1.00162 0.99937 0.91871 0.91646 0.91920 0.92330 0.90143 0.90675 0.90494 0.89845 0.77004 0.97105 0.95001 0.88771 0.93020 0.73139 0.84864 0.85667 0.86036 0.85965 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.31 37.16 0.35 -1.28 16 2 C -0.10 -1.16 3.93 -26.73 -0.10 -1.26 16 3 C -0.02 -0.22 0.34 -156.82 -0.05 -0.27 16 4 C 0.13 1.87 2.81 -4.04 -0.01 1.86 16 5 N -0.75 -13.11 4.89 -60.30 -0.30 -13.41 16 6 C 0.52 11.83 7.15 -10.99 -0.08 11.75 16 7 O -0.54 -13.88 15.46 5.55 0.09 -13.79 16 8 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 9 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 10 C -0.13 -3.10 8.86 37.16 0.33 -2.77 16 11 C -0.50 -14.21 8.37 -34.44 -0.29 -14.50 16 12 H 0.08 2.25 6.75 -52.49 -0.35 1.90 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 14 N -0.90 -25.32 11.32 55.43 0.63 -24.69 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.49 6.47 5.81 36.00 0.21 6.68 16 20 O -0.51 -7.58 16.74 -18.75 -0.31 -7.90 16 21 O -0.50 -5.84 13.24 -39.25 -0.52 -6.36 16 22 C -0.07 -0.72 3.42 -104.63 -0.36 -1.08 16 23 C -0.10 -1.11 8.98 -39.58 -0.36 -1.46 16 24 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 27 C -0.11 -1.10 8.82 -39.58 -0.35 -1.45 16 28 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 7.22 -51.93 -0.37 0.21 16 31 H 0.08 1.01 6.82 -51.93 -0.35 0.65 16 32 H 0.07 0.80 7.35 -51.93 -0.38 0.42 16 33 H 0.08 1.19 7.47 -51.93 -0.39 0.80 16 34 H 0.08 1.20 5.81 -51.93 -0.30 0.90 16 35 H 0.40 6.52 6.30 -40.82 -0.26 6.26 16 36 H 0.01 0.21 7.56 -51.93 -0.39 -0.19 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.41 3.03 9.10 45.56 0.41 3.44 16 41 H 0.13 1.44 5.90 -52.49 -0.31 1.13 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.12 1.12 7.58 -52.49 -0.40 0.73 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -33.24 365.67 -7.59 -40.83 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.42 Total: 8.95 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.25 Total: -5.98 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.33 Total: -38.10 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.75 Total: -28.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.24 -7.59 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595135446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.380 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds