Wall clock time and date at job start Tue Mar 31 2020 13:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47317 * 60.00177 * 3 2 1 5 5 N 1.46505 * 109.47212 * 59.99649 * 4 3 2 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 10 10 C 1.53002 * 109.47419 * 300.00197 * 8 6 5 11 11 C 1.50703 * 109.47064 * 180.02562 * 8 6 5 12 12 H 1.07995 * 120.00280 * 0.02562 * 11 8 6 13 13 C 1.37880 * 119.99788 * 180.02562 * 11 8 6 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48496 * 109.47443 * 239.99733 * 15 13 11 19 19 C 1.50706 * 109.46573 * 180.02562 * 3 2 1 20 20 O 1.20822 * 120.00226 * 359.97438 * 19 3 2 21 21 O 1.34230 * 119.99763 * 179.97438 * 19 3 2 22 22 C 1.50697 * 109.46961 * 299.99735 * 3 2 1 23 23 C 1.38231 * 119.99893 * 119.73425 * 22 3 2 24 24 C 1.38241 * 120.00346 * 179.76766 * 23 22 3 25 25 C 1.38233 * 119.99276 * 0.50062 * 24 23 22 26 26 C 1.38235 * 120.00591 * 359.75034 * 25 24 23 27 27 C 1.38233 * 119.99722 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 30 30 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 31 31 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 32 32 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 33 33 H 1.09002 * 109.47153 * 299.99641 * 4 3 2 34 34 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 5 4 3 36 36 H 1.09004 * 109.46733 * 60.00358 * 10 8 6 37 37 H 1.08996 * 109.47407 * 179.97438 * 10 8 6 38 38 H 1.08992 * 109.47063 * 300.00072 * 10 8 6 39 39 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 40 40 H 0.96702 * 116.99993 * 180.02562 * 21 19 3 41 41 H 1.08005 * 120.00050 * 359.97438 * 23 22 3 42 42 H 1.07995 * 119.99850 * 180.22738 * 24 23 22 43 43 H 1.08004 * 119.99701 * 179.72981 * 25 24 23 44 44 H 1.07993 * 120.00405 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00065 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 7 2.0184 1.4731 2.4454 6 6 1.6932 1.9339 3.6694 7 8 0.9960 2.9201 3.7808 8 6 2.1951 1.2232 4.8999 9 1 3.2851 1.2223 4.8999 10 6 1.6839 -0.2189 4.9001 11 6 1.6928 1.9337 6.1304 12 1 1.0720 2.8118 6.0313 13 6 2.0260 1.4627 7.3827 14 7 2.7824 0.3937 7.5034 15 14 1.4040 2.3438 8.9079 16 1 0.5790 3.5105 8.5036 17 1 0.5787 1.4110 9.7165 18 1 2.5594 2.8101 9.7160 19 6 3.5471 1.4424 -0.0006 20 8 4.1512 0.3960 -0.0006 21 8 4.2183 2.6048 -0.0013 22 6 1.5377 2.1528 -1.2305 23 6 0.7384 3.2735 -1.1037 24 6 0.2816 3.9280 -2.2324 25 6 0.6155 3.4556 -3.4878 26 6 1.4106 2.3319 -3.6147 27 6 1.8721 1.6808 -2.4860 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4401 2.1638 1.2492 34 1 1.8938 3.1913 1.2494 35 1 2.5763 0.6847 2.3564 36 1 2.0469 -0.7331 4.0101 37 1 2.0473 -0.7331 5.7898 38 1 0.5940 -0.2181 4.9001 39 1 3.0164 0.0620 8.3844 40 1 5.1840 2.5542 -0.0020 41 1 0.4736 3.6397 -0.1228 42 1 -0.3399 4.8056 -2.1332 43 1 0.2550 3.9644 -4.3697 44 1 1.6711 1.9627 -4.5955 45 1 2.4929 0.8026 -2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595135447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:14 Heat of formation + Delta-G solvation = -134.144223 kcal Electronic energy + Delta-G solvation = -27705.111750 eV Core-core repulsion = 23879.230526 eV Total energy + Delta-G solvation = -3825.881223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32170 -40.49909 -40.08206 -37.67809 -37.09298 -35.78123 -34.59878 -32.52493 -32.00922 -31.70562 -29.40006 -27.23901 -26.83026 -24.52391 -23.98300 -23.38462 -22.99385 -21.21107 -20.42383 -19.15205 -18.42344 -18.32214 -18.13391 -17.38210 -16.78518 -16.69102 -16.39028 -16.18843 -15.66672 -15.63987 -15.27061 -15.13218 -14.74261 -14.45756 -14.20311 -13.92333 -13.84329 -13.54637 -13.44266 -13.25290 -12.97756 -12.83562 -12.67487 -12.64784 -12.59888 -12.41138 -12.21321 -12.11216 -12.02965 -11.87524 -11.69194 -11.50523 -11.04262 -10.63397 -10.35389 -10.09478 -9.83241 -9.71552 -8.15443 -6.26260 0.32443 0.47502 1.01842 1.39840 1.41773 1.55312 1.87728 1.92620 2.24567 2.47760 2.83475 3.14265 3.33507 3.41392 3.59798 4.03204 4.10415 4.12798 4.25440 4.27937 4.30499 4.41188 4.48633 4.57544 4.66396 4.68479 4.73123 4.81924 4.92762 4.97486 5.00257 5.04099 5.12680 5.13205 5.34973 5.40548 5.46471 5.47614 5.55346 5.58172 5.62284 5.73240 5.91639 6.06339 6.18298 6.60409 6.83355 6.86039 7.37393 7.47551 8.90794 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003315 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.325424 B = 8444.159760 C = 8810.096498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.009 4.009 4 C 0.131 3.869 5 N -0.730 5.730 6 C 0.527 3.473 7 O -0.577 6.577 8 C 0.024 3.976 9 H 0.036 0.964 10 C -0.119 4.119 11 C -0.527 4.527 12 H 0.052 0.948 13 C 0.019 3.981 14 N -0.912 5.912 15 Si 0.957 3.043 16 H -0.277 1.277 17 H -0.274 1.274 18 H -0.275 1.275 19 C 0.494 3.506 20 O -0.529 6.529 21 O -0.507 6.507 22 C -0.077 4.077 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.119 4.119 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.403 0.597 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.427 0.573 41 H 0.123 0.877 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 1.258 -24.695 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.010 4.010 4 C 0.008 3.992 5 N -0.384 5.384 6 C 0.316 3.684 7 O -0.456 6.456 8 C 0.003 3.997 9 H 0.054 0.946 10 C -0.177 4.177 11 C -0.566 4.566 12 H 0.070 0.930 13 C -0.180 4.180 14 N -0.552 5.552 15 Si 0.783 3.217 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.201 1.201 19 C 0.337 3.663 20 O -0.418 6.418 21 O -0.320 6.320 22 C -0.077 4.077 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.137 4.137 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.238 0.762 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.289 0.711 41 H 0.141 0.859 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.294 1.604 -24.483 24.642 hybrid contribution 0.905 -0.015 1.185 1.491 sum -1.390 1.590 -23.298 23.394 Atomic orbital electron populations 1.21788 0.93486 1.03022 1.02160 1.21512 0.97474 0.90958 1.03839 1.19659 0.86967 0.99426 0.94980 1.21478 1.00310 0.95741 0.81680 1.46100 1.54708 1.32503 1.05076 1.21467 0.78369 0.83449 0.85136 1.90510 1.39583 1.28171 1.87363 1.18811 0.96714 0.94438 0.89783 0.94593 1.21550 0.98723 0.95948 1.01486 1.21318 1.32003 1.12312 0.90940 0.93005 1.25624 0.95129 0.95765 1.01528 1.69965 1.37356 1.23599 1.24266 0.85516 0.78293 0.78640 0.79278 1.20218 1.19934 1.20091 1.23224 0.91297 0.81107 0.70720 1.90721 1.70661 1.33822 1.46636 1.84523 1.28218 1.34787 1.84503 1.19095 0.99948 0.96545 0.92151 1.21282 0.97706 0.94967 1.00020 1.21429 0.99824 1.00242 0.92235 1.21543 0.97434 0.96356 0.98080 1.21395 0.97447 0.95730 0.98866 1.21074 1.00510 1.00286 0.91834 0.90795 0.93317 0.91511 0.89577 0.91387 0.89516 0.91231 0.76155 0.93561 0.91065 0.95348 0.92617 0.71114 0.85922 0.84074 0.83390 0.83554 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.31 71.98 0.67 -2.31 16 2 C -0.10 -2.21 3.93 30.60 0.12 -2.09 16 3 C -0.01 -0.21 0.34 -53.67 -0.02 -0.23 16 4 C 0.13 3.84 2.81 86.38 0.24 4.08 16 5 N -0.73 -25.63 4.90 -463.06 -2.27 -27.89 16 6 C 0.53 24.31 7.15 87.66 0.63 24.93 16 7 O -0.58 -30.36 15.46 -3.03 -0.05 -30.40 16 8 C 0.02 1.21 2.64 -12.28 -0.03 1.18 16 9 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 10 C -0.12 -5.53 8.86 71.98 0.64 -4.89 16 11 C -0.53 -30.75 8.37 25.60 0.21 -30.53 16 12 H 0.05 3.21 6.75 -2.91 -0.02 3.19 16 13 C 0.02 1.04 5.30 84.66 0.45 1.49 16 14 N -0.91 -51.80 11.32 21.45 0.24 -51.56 16 15 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 C 0.49 12.51 5.81 71.24 0.41 12.92 16 20 O -0.53 -15.30 16.74 21.98 0.37 -14.93 16 21 O -0.51 -11.19 13.24 -51.41 -0.68 -11.87 16 22 C -0.08 -1.58 3.42 -19.87 -0.07 -1.65 16 23 C -0.12 -2.47 8.98 22.27 0.20 -2.27 16 24 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.12 -1.56 10.05 22.27 0.22 -1.33 16 26 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 27 C -0.12 -2.11 8.82 22.27 0.20 -1.91 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.14 6.43 -2.39 -0.02 1.13 16 30 H 0.07 1.24 7.22 -2.39 -0.02 1.22 16 31 H 0.09 1.72 7.35 -2.39 -0.02 1.70 16 32 H 0.07 1.66 6.82 -2.39 -0.02 1.64 16 33 H 0.09 2.53 5.79 -2.39 -0.01 2.52 16 34 H 0.07 2.18 7.50 -2.39 -0.02 2.16 16 35 H 0.40 13.13 6.31 -92.71 -0.58 12.55 16 36 H 0.05 1.77 7.57 -2.39 -0.02 1.75 16 37 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.43 5.74 9.10 -74.06 -0.67 5.06 16 41 H 0.12 2.67 5.90 -2.91 -0.02 2.65 16 42 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.12 2.06 7.58 -2.91 -0.02 2.04 16 Total: -1.00 -71.69 365.69 3.74 -67.95 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.23 Total: 27.26 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.32 Total: -5.71 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.02 Total: -79.45 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -0.36 Total: -57.21 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.69 3.74 -67.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595135447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.192 kcal (2) G-P(sol) polarization free energy of solvation -71.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds