Wall clock time and date at job start Tue Mar 31 2020 12:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 C 1.52995 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47249 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47009 * 54.99991 * 5 4 3 7 7 N 1.46498 * 109.46668 * 294.99664 * 5 4 3 8 8 C 1.34783 * 119.99668 * 154.99535 * 7 5 4 9 9 O 1.21278 * 120.00074 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00049 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.47240 * 300.00870 * 10 8 7 12 12 C 1.50708 * 109.46898 * 60.00576 * 10 8 7 13 13 H 1.07995 * 120.00052 * 235.34747 * 12 10 8 14 14 C 1.37877 * 119.99460 * 55.34392 * 12 10 8 15 15 N 1.31513 * 120.00750 * 1.98049 * 14 12 10 16 16 Si 1.86810 * 119.99503 * 181.97690 * 14 12 10 17 17 H 1.48496 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46774 * 120.00407 * 16 14 12 19 19 H 1.48496 * 109.47121 * 240.00447 * 16 14 12 20 20 C 1.50696 * 109.47145 * 180.02562 * 10 8 7 21 21 C 1.38242 * 119.99977 * 226.94444 * 20 10 8 22 22 C 1.38239 * 119.99841 * 179.78767 * 21 20 10 23 23 C 1.38236 * 119.99889 * 0.44095 * 22 21 20 24 24 C 1.38229 * 120.00150 * 359.81447 * 23 22 21 25 25 C 1.38234 * 120.00106 * 359.97438 * 24 23 22 26 26 C 1.50701 * 109.47238 * 174.99759 * 5 4 3 27 27 O 1.20828 * 119.99650 * 119.99655 * 26 5 4 28 28 O 1.34223 * 120.00186 * 299.99792 * 26 5 4 29 29 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46905 * 300.00480 * 1 2 3 31 31 H 1.09006 * 109.46794 * 59.99790 * 1 2 3 32 32 H 1.09003 * 109.46905 * 239.99520 * 2 1 3 33 33 H 1.08996 * 109.46840 * 120.00131 * 2 1 3 34 34 H 1.08997 * 109.46845 * 300.00077 * 3 2 1 35 35 H 1.09001 * 109.47150 * 59.99593 * 3 2 1 36 36 H 1.09007 * 109.47269 * 299.99801 * 4 3 2 37 37 H 1.09001 * 109.47543 * 59.99766 * 4 3 2 38 38 H 0.96991 * 120.00895 * 335.00038 * 7 5 4 39 39 H 0.96997 * 120.00411 * 179.97438 * 15 14 12 40 40 H 1.08003 * 119.99843 * 359.97438 * 21 20 10 41 41 H 1.07995 * 119.99845 * 180.27423 * 22 21 20 42 42 H 1.07994 * 119.99834 * 179.83153 * 23 22 21 43 43 H 1.07996 * 120.00029 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00156 * 180.02562 * 25 24 23 45 45 H 0.96699 * 116.99965 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 0.8423 7 7 3.6921 3.5405 -1.2513 8 6 3.5652 4.8816 -1.2982 9 8 3.7727 5.5454 -0.3048 10 6 3.1666 5.5561 -2.5855 11 1 3.9052 5.3343 -3.3558 12 6 1.8169 5.0473 -3.0223 13 1 1.6937 4.6192 -4.0061 14 6 0.7395 5.1282 -2.1657 15 7 0.8804 5.6847 -0.9825 16 14 -0.9205 4.4475 -2.6861 17 1 -0.8150 3.8771 -4.0530 18 1 -1.3388 3.3843 -1.7374 19 1 -1.9269 5.5394 -2.6811 20 6 3.0969 7.0461 -2.3712 21 6 2.0062 7.7603 -2.8311 22 6 1.9402 9.1265 -2.6306 23 6 2.9691 9.7798 -1.9783 24 6 4.0621 9.0665 -1.5231 25 6 4.1261 7.6997 -1.7197 26 6 5.5821 2.8866 0.1233 27 8 6.2589 3.3844 -0.7451 28 8 6.1679 2.3351 1.1976 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9337 0.9284 0.8892 37 1 3.9330 0.9287 -0.8908 38 1 3.5264 3.0097 -2.0460 39 1 0.1223 5.7420 -0.3801 40 1 1.2043 7.2504 -3.3444 41 1 1.0861 9.6837 -2.9860 42 1 2.9188 10.8475 -1.8241 43 1 4.8661 9.5770 -1.0139 44 1 4.9799 7.1423 -1.3637 45 1 7.1340 2.3599 1.2320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595634838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:26 Heat of formation + Delta-G solvation = -121.785242 kcal Electronic energy + Delta-G solvation = -28068.403740 eV Core-core repulsion = 24243.058442 eV Total energy + Delta-G solvation = -3825.345298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.21667 -38.83745 -37.52886 -36.06458 -35.80737 -33.66912 -33.56385 -30.87244 -30.41258 -29.64213 -27.58127 -26.56578 -23.90737 -23.04804 -21.40951 -21.14217 -20.84424 -20.15902 -19.30810 -17.81281 -16.92583 -16.45882 -15.86961 -15.66063 -15.29498 -15.06847 -14.85656 -14.71300 -13.95669 -13.76875 -13.61203 -13.26444 -13.07885 -12.92359 -12.51585 -12.41725 -12.18102 -12.02488 -11.90861 -11.61861 -11.28986 -11.23944 -11.11194 -11.08338 -11.00329 -10.76039 -10.70425 -10.46680 -10.36775 -10.13485 -10.02671 -9.65798 -9.37182 -8.73560 -8.38219 -8.23817 -7.66414 -7.37690 -6.14845 -4.31066 2.51117 2.57341 2.64384 3.15746 3.16553 3.27988 3.29197 4.03466 4.23365 4.42030 4.79456 5.04220 5.05800 5.10616 5.13079 5.35101 5.38095 5.54437 5.67227 5.87721 5.88432 5.90662 5.99266 6.00699 6.02965 6.08009 6.08681 6.30361 6.39432 6.44547 6.56548 6.63113 6.70689 6.71274 6.82236 6.92754 7.15908 7.24026 7.30753 7.58598 7.66510 7.68747 7.80402 8.16787 8.18924 8.29261 8.52706 8.76289 9.35324 9.61378 10.85440 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.006100 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.190120 B = 4588.805638 C = 6771.461583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.115 4.115 5 C 0.164 3.836 6 H 0.121 0.879 7 N -0.712 5.712 8 C 0.561 3.439 9 O -0.544 6.544 10 C 0.058 3.942 11 H 0.059 0.941 12 C -0.539 4.539 13 H 0.068 0.932 14 C 0.076 3.924 15 N -0.841 5.841 16 Si 0.882 3.118 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.014 4.014 21 C -0.065 4.065 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.100 4.100 26 C 0.463 3.537 27 O -0.506 6.506 28 O -0.522 6.522 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.402 0.598 39 H 0.264 0.736 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -8.254 1.637 9.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.158 4.158 4 C -0.153 4.153 5 C 0.055 3.945 6 H 0.138 0.862 7 N -0.366 5.366 8 C 0.351 3.649 9 O -0.419 6.419 10 C 0.036 3.964 11 H 0.077 0.923 12 C -0.577 4.577 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.473 5.473 16 Si 0.709 3.291 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.209 1.209 20 C -0.015 4.015 21 C -0.082 4.082 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.118 4.118 26 C 0.303 3.697 27 O -0.393 6.393 28 O -0.333 6.333 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.234 -7.552 2.285 8.528 hybrid contribution -0.480 -0.474 -0.228 0.712 sum 2.755 -8.026 2.057 8.732 Atomic orbital electron populations 1.21771 0.96031 1.01011 1.02268 1.21499 0.95846 0.96947 1.01510 1.21618 0.93531 0.96570 1.04070 1.21786 0.97257 0.93081 1.03225 1.20241 0.85322 0.96074 0.92853 0.86186 1.45648 1.71761 1.08240 1.10929 1.21078 0.71831 0.80365 0.91654 1.90540 1.50024 1.63894 1.37486 1.17865 0.97975 0.89382 0.91142 0.92338 1.20740 0.91744 1.43527 1.01670 0.91410 1.25027 0.98732 0.94427 0.94970 1.70079 1.30983 1.39371 1.06899 0.86684 0.84397 0.79107 0.78929 1.19529 1.20697 1.20905 1.19789 0.92288 0.95367 0.94015 1.21129 0.97361 0.92082 0.97671 1.20982 0.98244 0.95409 1.01981 1.20764 0.95488 0.98303 1.01715 1.20815 0.98313 0.94689 1.02424 1.20994 0.99195 0.93500 0.98123 1.24709 0.93327 0.73460 0.78253 1.90684 1.65681 1.41919 1.40994 1.84564 1.28102 1.74783 1.45816 0.93177 0.92815 0.92518 0.92175 0.92386 0.90197 0.91594 0.89969 0.91198 0.76269 0.92552 0.85455 0.88068 0.88244 0.88162 0.87536 0.74077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.12 -1.65 5.10 -26.73 -0.14 -1.79 16 4 C -0.12 -1.47 4.72 -26.73 -0.13 -1.60 16 5 C 0.16 2.74 2.48 -69.08 -0.17 2.56 16 6 H 0.12 2.25 7.58 -51.93 -0.39 1.86 16 7 N -0.71 -13.71 3.96 -54.93 -0.22 -13.93 16 8 C 0.56 13.08 5.28 -10.98 -0.06 13.02 16 9 O -0.54 -14.31 13.62 5.56 0.08 -14.24 16 10 C 0.06 1.35 2.77 -94.07 -0.26 1.09 16 11 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 12 C -0.54 -12.75 7.11 -34.44 -0.24 -12.99 16 13 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.08 1.85 4.01 -17.82 -0.07 1.77 16 15 N -0.84 -21.96 10.90 55.43 0.60 -21.35 16 16 Si 0.88 19.04 29.54 -169.99 -5.02 14.02 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.01 -0.33 4.51 -104.62 -0.47 -0.80 16 21 C -0.06 -1.51 8.21 -39.58 -0.32 -1.83 16 22 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 23 C -0.14 -2.91 10.05 -39.59 -0.40 -3.31 16 24 C -0.14 -3.04 10.05 -39.59 -0.40 -3.44 16 25 C -0.10 -2.33 8.21 -39.58 -0.33 -2.66 16 26 C 0.46 7.68 7.66 36.01 0.28 7.95 16 27 O -0.51 -10.02 17.08 -18.75 -0.32 -10.34 16 28 O -0.52 -6.64 13.23 -39.24 -0.52 -7.16 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.92 7.99 -51.92 -0.42 0.50 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 7.10 8.49 -40.82 -0.35 6.76 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.13 3.05 6.04 -52.48 -0.32 2.73 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.11 2.54 7.01 -52.48 -0.37 2.17 16 45 H 0.40 3.38 9.10 45.56 0.41 3.79 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -30.78 375.10 -8.67 -39.45 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -6.02 Total: 16.40 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.90 Total: -8.51 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.39 Total: -35.28 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.76 Total: -31.73 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.78 -8.67 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595634838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.334 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds