Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 C 1.52995 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47249 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47009 * 54.99991 * 5 4 3 7 7 N 1.46498 * 109.46668 * 294.99664 * 5 4 3 8 8 C 1.34783 * 119.99668 * 154.99535 * 7 5 4 9 9 O 1.21278 * 120.00074 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00049 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.47240 * 300.00870 * 10 8 7 12 12 C 1.50708 * 109.46898 * 60.00576 * 10 8 7 13 13 H 1.07995 * 120.00052 * 235.34747 * 12 10 8 14 14 C 1.37877 * 119.99460 * 55.34392 * 12 10 8 15 15 N 1.31513 * 120.00750 * 1.98049 * 14 12 10 16 16 Si 1.86810 * 119.99503 * 181.97690 * 14 12 10 17 17 H 1.48496 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46774 * 120.00407 * 16 14 12 19 19 H 1.48496 * 109.47121 * 240.00447 * 16 14 12 20 20 C 1.50696 * 109.47145 * 180.02562 * 10 8 7 21 21 C 1.38242 * 119.99977 * 226.94444 * 20 10 8 22 22 C 1.38239 * 119.99841 * 179.78767 * 21 20 10 23 23 C 1.38236 * 119.99889 * 0.44095 * 22 21 20 24 24 C 1.38229 * 120.00150 * 359.81447 * 23 22 21 25 25 C 1.38234 * 120.00106 * 359.97438 * 24 23 22 26 26 C 1.50701 * 109.47238 * 174.99759 * 5 4 3 27 27 O 1.20828 * 119.99650 * 119.99655 * 26 5 4 28 28 O 1.34223 * 120.00186 * 299.99792 * 26 5 4 29 29 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46905 * 300.00480 * 1 2 3 31 31 H 1.09006 * 109.46794 * 59.99790 * 1 2 3 32 32 H 1.09003 * 109.46905 * 239.99520 * 2 1 3 33 33 H 1.08996 * 109.46840 * 120.00131 * 2 1 3 34 34 H 1.08997 * 109.46845 * 300.00077 * 3 2 1 35 35 H 1.09001 * 109.47150 * 59.99593 * 3 2 1 36 36 H 1.09007 * 109.47269 * 299.99801 * 4 3 2 37 37 H 1.09001 * 109.47543 * 59.99766 * 4 3 2 38 38 H 0.96991 * 120.00895 * 335.00038 * 7 5 4 39 39 H 0.96997 * 120.00411 * 179.97438 * 15 14 12 40 40 H 1.08003 * 119.99843 * 359.97438 * 21 20 10 41 41 H 1.07995 * 119.99845 * 180.27423 * 22 21 20 42 42 H 1.07994 * 119.99834 * 179.83153 * 23 22 21 43 43 H 1.07996 * 120.00029 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00156 * 180.02562 * 25 24 23 45 45 H 0.96699 * 116.99965 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 0.8423 7 7 3.6921 3.5405 -1.2513 8 6 3.5652 4.8816 -1.2982 9 8 3.7727 5.5454 -0.3048 10 6 3.1666 5.5561 -2.5855 11 1 3.9052 5.3343 -3.3558 12 6 1.8169 5.0473 -3.0223 13 1 1.6937 4.6192 -4.0061 14 6 0.7395 5.1282 -2.1657 15 7 0.8804 5.6847 -0.9825 16 14 -0.9205 4.4475 -2.6861 17 1 -0.8150 3.8771 -4.0530 18 1 -1.3388 3.3843 -1.7374 19 1 -1.9269 5.5394 -2.6811 20 6 3.0969 7.0461 -2.3712 21 6 2.0062 7.7603 -2.8311 22 6 1.9402 9.1265 -2.6306 23 6 2.9691 9.7798 -1.9783 24 6 4.0621 9.0665 -1.5231 25 6 4.1261 7.6997 -1.7197 26 6 5.5821 2.8866 0.1233 27 8 6.2589 3.3844 -0.7451 28 8 6.1679 2.3351 1.1976 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9337 0.9284 0.8892 37 1 3.9330 0.9287 -0.8908 38 1 3.5264 3.0097 -2.0460 39 1 0.1223 5.7420 -0.3801 40 1 1.2043 7.2504 -3.3444 41 1 1.0861 9.6837 -2.9860 42 1 2.9188 10.8475 -1.8241 43 1 4.8661 9.5770 -1.0139 44 1 4.9799 7.1423 -1.3637 45 1 7.1340 2.3599 1.2320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595634838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = -139.888441 kcal Electronic energy + Delta-G solvation = -28069.188753 eV Core-core repulsion = 24243.058442 eV Total energy + Delta-G solvation = -3826.130311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61229 -40.50959 -39.14878 -37.35133 -37.06938 -35.47711 -34.94136 -32.67172 -31.75974 -31.35748 -29.14340 -27.99566 -25.73906 -24.15185 -23.04049 -22.74423 -21.87528 -21.64434 -21.03571 -19.11993 -18.67937 -17.87274 -17.46843 -17.14803 -16.82644 -16.62260 -16.45154 -16.03825 -15.65181 -15.32998 -14.98779 -14.72153 -14.31381 -14.21974 -14.08665 -13.94788 -13.80546 -13.67886 -13.44547 -13.02258 -12.79882 -12.75799 -12.50406 -12.46862 -12.28623 -12.21222 -12.09634 -11.83056 -11.76064 -11.47799 -11.40111 -11.36170 -11.16332 -10.63052 -10.21803 -9.87560 -9.39149 -9.11013 -8.03814 -6.23868 0.86746 0.92275 1.17998 1.41758 1.48684 1.56076 1.87468 2.35143 2.46162 2.81598 3.22787 3.33799 3.64811 3.95526 4.06815 4.25170 4.32909 4.34451 4.36188 4.43545 4.48624 4.52839 4.65912 4.78001 4.81341 4.86614 4.98306 5.00157 5.05650 5.07963 5.12670 5.15422 5.31191 5.42353 5.44533 5.53759 5.55561 5.56820 5.72746 5.77646 5.88596 5.94589 5.98620 6.42796 6.52841 6.75305 6.98440 6.99687 7.44877 7.85509 8.95365 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.006100 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.190120 B = 4588.805638 C = 6771.461583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.117 4.117 4 C -0.102 4.102 5 C 0.160 3.840 6 H 0.097 0.903 7 N -0.705 5.705 8 C 0.560 3.440 9 O -0.581 6.581 10 C 0.047 3.953 11 H 0.060 0.940 12 C -0.534 4.534 13 H 0.071 0.929 14 C 0.048 3.952 15 N -0.869 5.869 16 Si 0.934 3.066 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.291 1.291 20 C -0.034 4.034 21 C -0.085 4.085 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.120 4.120 26 C 0.472 3.528 27 O -0.543 6.543 28 O -0.505 6.505 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.409 0.591 39 H 0.256 0.744 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -9.161 1.808 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.155 4.155 4 C -0.140 4.140 5 C 0.052 3.948 6 H 0.115 0.885 7 N -0.358 5.358 8 C 0.350 3.650 9 O -0.460 6.460 10 C 0.026 3.974 11 H 0.078 0.922 12 C -0.571 4.571 13 H 0.089 0.911 14 C -0.157 4.157 15 N -0.503 5.503 16 Si 0.761 3.239 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.217 1.217 20 C -0.035 4.035 21 C -0.103 4.103 22 C -0.168 4.168 23 C -0.158 4.158 24 C -0.165 4.165 25 C -0.138 4.138 26 C 0.313 3.687 27 O -0.433 6.433 28 O -0.318 6.318 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.245 0.755 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.157 0.843 43 H 0.145 0.855 44 H 0.109 0.891 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 3.317 -8.517 2.450 9.463 hybrid contribution -0.429 -0.183 -0.245 0.526 sum 2.888 -8.700 2.205 9.429 Atomic orbital electron populations 1.21795 0.96571 1.01963 1.00978 1.21470 0.95336 0.95195 1.03147 1.21554 0.94207 0.97972 1.01780 1.21779 0.96384 0.90480 1.05339 1.20387 0.85923 0.97901 0.90635 0.88532 1.45475 1.70836 1.07215 1.12240 1.20990 0.71480 0.81498 0.90991 1.90501 1.51937 1.65027 1.38494 1.17982 0.98037 0.89867 0.91544 0.92182 1.20852 0.91938 1.42769 1.01560 0.91126 1.25472 1.01061 0.94429 0.94707 1.70234 1.31135 1.41048 1.07899 0.85861 0.81010 0.78153 0.78909 1.18564 1.20702 1.21737 1.19917 0.93023 0.95642 0.94924 1.21124 0.97029 0.93375 0.98726 1.21328 0.99432 0.94675 1.01392 1.21168 0.94286 1.00188 1.00131 1.21165 0.99512 0.93867 1.01933 1.20997 0.98881 0.94761 0.99176 1.24443 0.93048 0.72821 0.78401 1.90681 1.66383 1.43656 1.42557 1.84487 1.30179 1.73505 1.43619 0.91089 0.93543 0.94409 0.90833 0.90322 0.93160 0.93316 0.87332 0.89360 0.75472 0.93427 0.86771 0.85386 0.84321 0.85505 0.89119 0.71414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.91 71.98 0.71 -2.77 16 2 C -0.11 -2.35 5.93 30.59 0.18 -2.17 16 3 C -0.12 -3.15 5.10 30.59 0.16 -2.99 16 4 C -0.10 -2.44 4.72 30.59 0.14 -2.30 16 5 C 0.16 5.34 2.48 44.25 0.11 5.45 16 6 H 0.10 3.74 7.58 -2.39 -0.02 3.72 16 7 N -0.70 -27.82 3.96 -446.09 -1.77 -29.58 16 8 C 0.56 27.09 5.28 87.66 0.46 27.55 16 9 O -0.58 -31.84 13.62 -3.02 -0.04 -31.88 16 10 C 0.05 2.28 2.77 -13.03 -0.04 2.24 16 11 H 0.06 2.79 8.14 -2.39 -0.02 2.78 16 12 C -0.53 -25.74 7.11 25.60 0.18 -25.56 16 13 H 0.07 3.30 7.81 -2.91 -0.02 3.27 16 14 C 0.05 2.37 4.01 84.66 0.34 2.71 16 15 N -0.87 -46.69 10.90 21.45 0.23 -46.46 16 16 Si 0.93 39.60 29.54 68.60 2.03 41.63 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 20 C -0.03 -1.69 4.51 -19.87 -0.09 -1.78 16 21 C -0.08 -4.00 8.21 22.27 0.18 -3.82 16 22 C -0.15 -6.16 10.05 22.27 0.22 -5.94 16 23 C -0.14 -5.33 10.05 22.27 0.22 -5.10 16 24 C -0.15 -6.05 10.05 22.27 0.22 -5.82 16 25 C -0.12 -5.72 8.21 22.27 0.18 -5.54 16 26 C 0.47 15.33 7.66 71.24 0.55 15.88 16 27 O -0.54 -21.52 17.08 21.96 0.37 -21.14 16 28 O -0.51 -11.80 13.23 -51.35 -0.68 -12.48 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.64 7.75 -2.39 -0.02 1.62 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 2.09 7.99 -2.38 -0.02 2.07 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 14.71 8.49 -92.71 -0.79 13.92 16 39 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 40 H 0.11 5.59 6.04 -2.91 -0.02 5.57 16 41 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.09 4.52 7.01 -2.91 -0.02 4.50 16 45 H 0.42 6.07 9.10 -74.06 -0.67 5.40 16 Total: -1.00 -68.38 375.10 3.44 -64.94 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -0.45 Total: 44.92 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 3.75 Total: -9.94 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.53 Total: -76.04 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -0.35 Total: -65.50 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -68.38 3.44 -64.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595634838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.952 kcal (2) G-P(sol) polarization free energy of solvation -68.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds