Wall clock time and date at job start Tue Mar 31 2020 13:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46871 * 2 1 4 4 C 1.52999 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47131 * 54.99667 * 4 3 2 6 6 N 1.46502 * 109.46918 * 295.00451 * 4 3 2 7 7 C 1.34773 * 120.00362 * 155.00170 * 6 4 3 8 8 O 1.21291 * 119.99685 * 359.97438 * 7 6 4 9 9 C 1.50695 * 120.00504 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47495 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46643 * 55.00436 * 10 9 7 12 12 C 1.50696 * 109.47518 * 295.00588 * 10 9 7 13 13 H 1.08007 * 119.99473 * 325.12322 * 12 10 9 14 14 C 1.37871 * 120.00633 * 145.12296 * 12 10 9 15 15 N 1.31507 * 120.00505 * 184.99064 * 14 12 10 16 16 Si 1.86813 * 119.99636 * 4.98667 * 14 12 10 17 17 H 1.48501 * 109.46956 * 84.72923 * 16 14 12 18 18 H 1.48492 * 109.46977 * 204.73185 * 16 14 12 19 19 H 1.48499 * 109.47113 * 324.73101 * 16 14 12 20 20 C 1.50697 * 109.47404 * 175.00124 * 10 9 7 21 21 C 1.38230 * 120.00008 * 64.69383 * 20 10 9 22 22 C 1.38233 * 120.00138 * 179.78921 * 21 20 10 23 23 C 1.38236 * 120.00086 * 0.44283 * 22 21 20 24 24 C 1.38237 * 119.99872 * 359.81306 * 23 22 21 25 25 C 1.38235 * 120.00167 * 244.97392 * 20 10 9 26 26 C 1.50693 * 109.46999 * 175.00393 * 4 3 2 27 27 O 1.20827 * 120.00292 * 120.00115 * 26 4 3 28 28 O 1.34236 * 119.99753 * 299.99341 * 26 4 3 29 29 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46901 * 299.99245 * 1 2 3 31 31 H 1.08995 * 109.47412 * 60.00035 * 1 2 3 32 32 H 1.08995 * 109.47409 * 120.00523 * 2 1 3 33 33 H 1.09001 * 109.46901 * 240.00755 * 2 1 3 34 34 H 1.08995 * 109.47074 * 300.00173 * 3 2 1 35 35 H 1.08996 * 109.47097 * 60.00354 * 3 2 1 36 36 H 0.97007 * 120.00012 * 334.99324 * 6 4 3 37 37 H 1.08999 * 109.47559 * 300.00268 * 9 7 6 38 38 H 1.09000 * 109.46781 * 60.00141 * 9 7 6 39 39 H 0.97003 * 120.00425 * 180.02562 * 15 14 12 40 40 H 1.08009 * 119.99848 * 0.02562 * 21 20 10 41 41 H 1.08000 * 120.00161 * 180.27622 * 22 21 20 42 42 H 1.08001 * 120.00091 * 179.83615 * 23 22 21 43 43 H 1.07998 * 120.00029 * 180.02562 * 24 23 22 44 44 H 1.08007 * 120.00020 * 359.96980 * 25 20 10 45 45 H 0.96705 * 116.99606 * 180.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8427 6 7 4.0589 0.8586 1.2509 7 6 5.2808 0.2921 1.2981 8 8 5.9757 0.2654 0.3043 9 6 5.7839 -0.3081 2.5856 10 6 7.1861 -0.8803 2.3680 11 1 7.8373 -0.1034 1.9670 12 6 7.1149 -2.0280 1.3940 13 1 6.2549 -2.6814 1.3915 14 6 8.1474 -2.2441 0.5062 15 7 8.0428 -3.1834 -0.4081 16 14 9.6951 -1.2022 0.6022 17 1 10.6205 -1.7822 1.6084 18 1 10.3591 -1.1788 -0.7258 19 1 9.3357 0.1825 1.0004 20 6 7.7385 -1.3699 3.6818 21 6 7.1334 -2.4273 4.3349 22 6 7.6426 -2.8792 5.5379 23 6 8.7514 -2.2678 6.0924 24 6 9.3534 -1.2070 5.4420 25 6 8.8467 -0.7578 4.2368 26 6 4.0722 2.8580 -0.1244 27 8 4.7672 3.3306 0.7437 28 8 3.7475 3.5938 -1.1991 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8935 -0.5139 0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.5031 0.8798 2.0456 37 1 5.8210 0.4624 3.3557 38 1 5.1116 -1.1057 2.9017 39 1 8.7694 -3.3356 -1.0325 40 1 6.2650 -2.9029 3.9032 41 1 7.1725 -3.7083 6.0459 42 1 9.1477 -2.6193 7.0337 43 1 10.2200 -0.7295 5.8750 44 1 9.3171 0.0710 3.7286 45 1 4.0935 4.4961 -1.2342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596015561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:47 Heat of formation + Delta-G solvation = -142.427976 kcal Electronic energy + Delta-G solvation = -27175.336132 eV Core-core repulsion = 23349.095698 eV Total energy + Delta-G solvation = -3826.240434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71900 -40.53707 -39.76796 -37.39392 -37.06296 -35.83384 -34.33628 -33.70645 -31.61874 -31.21806 -29.95286 -27.71074 -26.06155 -24.42231 -23.32184 -22.62716 -22.08399 -21.60762 -20.84433 -19.17847 -19.03357 -18.23196 -17.86714 -17.28727 -17.06537 -16.56520 -16.40395 -15.96973 -15.70840 -15.52668 -15.32052 -14.88329 -14.59722 -14.39253 -14.27430 -14.12100 -13.89548 -13.68427 -13.43613 -13.29976 -12.95343 -12.79913 -12.75005 -12.63060 -12.33489 -12.08372 -12.02103 -11.88996 -11.83593 -11.59841 -11.53945 -11.48925 -11.02355 -10.79535 -10.55398 -10.19686 -9.63785 -9.31493 -8.23094 -6.17956 0.66803 0.72213 1.12078 1.27132 1.29937 1.36408 1.63366 2.04627 2.37732 2.45447 3.07399 3.21262 3.59607 3.91452 4.05556 4.10478 4.11634 4.28754 4.30444 4.33969 4.42602 4.44939 4.49224 4.62576 4.64704 4.78902 4.84206 4.86859 4.89219 5.01549 5.06891 5.20518 5.30364 5.31720 5.36733 5.40035 5.42789 5.51148 5.55598 5.69118 5.75671 5.81878 6.01882 6.32665 6.35713 6.62538 6.80426 6.92241 7.44868 7.46124 8.93849 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.004056 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.944980 B = 6901.792765 C = 7369.599670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.104 4.104 4 C 0.154 3.846 5 H 0.105 0.895 6 N -0.707 5.707 7 C 0.517 3.483 8 O -0.556 6.556 9 C -0.110 4.110 10 C 0.047 3.953 11 H 0.031 0.969 12 C -0.459 4.459 13 H 0.043 0.957 14 C 0.029 3.971 15 N -0.948 5.948 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.298 1.298 19 H -0.260 1.260 20 C -0.064 4.064 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.160 4.160 26 C 0.469 3.531 27 O -0.544 6.544 28 O -0.506 6.506 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.418 0.582 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.258 0.742 40 H 0.115 0.885 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 10.040 8.120 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.142 4.142 4 C 0.046 3.954 5 H 0.123 0.877 6 N -0.363 5.363 7 C 0.306 3.694 8 O -0.432 6.432 9 C -0.150 4.150 10 C 0.028 3.972 11 H 0.049 0.951 12 C -0.497 4.497 13 H 0.061 0.939 14 C -0.167 4.167 15 N -0.590 5.590 16 Si 0.742 3.258 17 H -0.190 1.190 18 H -0.225 1.225 19 H -0.185 1.185 20 C -0.064 4.064 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.158 4.158 24 C -0.142 4.142 25 C -0.179 4.179 26 C 0.310 3.690 27 O -0.434 6.434 28 O -0.319 6.319 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.256 0.744 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.156 0.844 44 H 0.120 0.880 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -13.208 9.678 7.501 18.011 hybrid contribution 1.284 0.858 -0.530 1.633 sum -11.924 10.536 6.972 17.372 Atomic orbital electron populations 1.21726 0.93826 1.02169 1.02665 1.21534 0.97263 0.95150 1.02423 1.21841 0.87289 0.99397 1.05663 1.20548 0.97893 0.86559 0.90385 0.87731 1.45680 1.18147 1.59277 1.13150 1.21110 0.80779 0.76425 0.91120 1.90731 1.57112 1.57313 1.38002 1.21564 0.98449 1.01108 0.93861 1.18159 0.93352 0.95225 0.90504 0.95095 1.20790 1.03546 1.10909 1.14421 0.93893 1.25485 1.00813 0.95696 0.94755 1.70002 1.33576 1.35444 1.19992 0.86250 0.81581 0.81124 0.76843 1.19041 1.22506 1.18467 1.20501 0.95393 0.95676 0.94846 1.21035 1.00869 0.96243 0.95296 1.21431 0.97006 1.00105 0.95482 1.21351 0.96652 0.96705 1.01085 1.21324 1.00278 0.97799 0.94787 1.21204 0.97965 1.01231 0.97463 1.24432 0.76416 0.89670 0.78460 1.90701 1.36797 1.73257 1.42641 1.84483 1.71736 1.32032 1.43628 0.92631 0.91560 0.91928 0.91846 0.92809 0.87691 0.88851 0.74361 0.88244 0.87717 0.93306 0.86671 0.83966 0.83466 0.84361 0.87972 0.71282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.99 0.71 -1.19 16 2 C -0.13 -2.19 5.82 30.60 0.18 -2.01 16 3 C -0.10 -1.71 4.72 30.60 0.14 -1.57 16 4 C 0.15 4.05 2.48 44.24 0.11 4.16 16 5 H 0.10 3.31 7.58 -2.39 -0.02 3.29 16 6 N -0.71 -20.38 4.06 -446.11 -1.81 -22.19 16 7 C 0.52 20.84 7.41 87.66 0.65 21.49 16 8 O -0.56 -28.84 14.65 -3.06 -0.04 -28.88 16 9 C -0.11 -4.14 4.96 29.85 0.15 -3.99 16 10 C 0.05 2.21 1.21 -12.29 -0.01 2.20 16 11 H 0.03 1.62 4.70 -2.39 -0.01 1.61 16 12 C -0.46 -26.08 6.87 25.60 0.18 -25.90 16 13 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 14 C 0.03 1.79 5.47 84.65 0.46 2.25 16 15 N -0.95 -62.08 13.96 21.44 0.30 -61.78 16 16 Si 0.91 49.42 27.15 68.60 1.86 51.28 16 17 H -0.27 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.30 -16.19 7.11 99.48 0.71 -15.49 16 19 H -0.26 -13.79 6.06 99.48 0.60 -13.19 16 20 C -0.06 -2.66 4.55 -19.87 -0.09 -2.75 16 21 C -0.12 -4.35 8.87 22.27 0.20 -4.15 16 22 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 23 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 24 C -0.12 -3.90 10.05 22.27 0.22 -3.67 16 25 C -0.16 -6.20 9.43 22.27 0.21 -5.99 16 26 C 0.47 13.16 7.66 71.23 0.55 13.70 16 27 O -0.54 -19.28 17.08 21.96 0.38 -18.90 16 28 O -0.51 -10.33 13.23 -51.47 -0.68 -11.01 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.45 7.99 -2.39 -0.02 1.43 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.42 8.80 8.60 -92.70 -0.80 8.01 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.10 3.50 7.86 -2.39 -0.02 3.48 16 39 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 40 H 0.12 4.31 7.80 -2.91 -0.02 4.28 16 41 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.10 3.98 7.95 -2.91 -0.02 3.96 16 45 H 0.43 5.14 9.10 -74.05 -0.67 4.47 16 Total: -1.00 -84.22 378.63 3.53 -80.69 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.57 Total: 25.45 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 4.10 Total: -14.66 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -1.51 Total: -83.97 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -0.35 Total: -58.79 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 1.86 Total: 51.28 kcal Total: -84.22 3.53 -80.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596015561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.742 kcal (2) G-P(sol) polarization free energy of solvation -84.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds