Wall clock time and date at job start Tue Mar 31 2020 12:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34784 * 119.99589 * 2 1 4 4 O 1.21280 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99906 * 359.97438 * 3 2 1 6 6 C 1.50700 * 109.46813 * 180.02562 * 5 3 2 7 7 C 1.37640 * 120.13180 * 265.30632 * 6 5 3 8 8 C 1.38613 * 120.24862 * 180.32332 * 7 6 5 9 9 C 1.38655 * 120.50174 * 359.67182 * 8 7 6 10 10 C 1.37598 * 120.24576 * 359.97438 * 9 8 7 11 11 C 1.40702 * 120.12495 * 85.00356 * 6 5 3 12 12 C 1.41393 * 120.24620 * 359.97406 * 11 6 5 13 13 H 1.07999 * 119.99787 * 29.07372 * 12 11 6 14 14 C 1.39938 * 120.00244 * 209.07592 * 12 11 6 15 15 N 1.30823 * 120.00241 * 197.10039 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 17.09514 * 14 12 11 17 17 H 1.48495 * 109.47432 * 270.00073 * 16 14 12 18 18 H 1.48498 * 109.46929 * 30.00589 * 16 14 12 19 19 H 1.48504 * 109.46998 * 150.00206 * 16 14 12 20 20 C 1.46501 * 120.00443 * 179.97438 * 2 1 3 21 21 C 1.53002 * 109.46867 * 120.00330 * 20 2 1 22 22 C 1.52999 * 109.47151 * 240.00307 * 20 2 1 23 23 C 1.52995 * 109.46781 * 0.02562 * 20 2 1 24 24 C 1.50704 * 109.47082 * 179.97438 * 23 20 2 25 25 O 1.20831 * 119.99866 * 359.97438 * 24 23 20 26 26 O 1.34225 * 120.00185 * 180.02562 * 24 23 20 27 27 H 1.09005 * 109.46741 * 90.00898 * 1 2 3 28 28 H 1.09001 * 109.47242 * 209.99912 * 1 2 3 29 29 H 1.08995 * 109.47992 * 330.00474 * 1 2 3 30 30 H 1.08999 * 109.47299 * 60.00523 * 5 3 2 31 31 H 1.08998 * 109.47401 * 299.99992 * 5 3 2 32 32 H 1.08005 * 119.87130 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.74473 * 179.69460 * 8 7 6 34 34 H 1.08002 * 119.87493 * 180.02562 * 9 8 7 35 35 H 1.08003 * 120.12022 * 180.02562 * 10 9 8 36 36 H 0.97004 * 119.99819 * 355.45620 * 15 14 12 37 37 H 1.09004 * 109.46850 * 60.00630 * 21 20 2 38 38 H 1.08997 * 109.46884 * 179.97438 * 21 20 2 39 39 H 1.08998 * 109.47395 * 300.00458 * 21 20 2 40 40 H 1.09001 * 109.46853 * 60.00365 * 22 20 2 41 41 H 1.09000 * 109.46947 * 179.97438 * 22 20 2 42 42 H 1.08994 * 109.47717 * 300.00113 * 22 20 2 43 43 H 1.09001 * 109.47390 * 299.99737 * 23 20 2 44 44 H 1.09002 * 109.47570 * 59.99775 * 23 20 2 45 45 H 0.96706 * 116.99996 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3852 2.4724 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.7394 4.2068 1.1851 8 6 3.6348 5.2650 1.1869 9 6 4.1679 5.7378 -0.0026 10 6 3.8129 5.1594 -1.1996 11 6 2.9039 4.0852 -1.2137 12 6 2.5314 3.4834 -2.4377 13 1 1.5566 3.0304 -2.5422 14 6 3.4259 3.4746 -3.5139 15 7 2.9912 3.2330 -4.7239 16 14 5.2408 3.8080 -3.2226 17 1 5.5014 5.2652 -3.3397 18 1 5.6169 3.3455 -1.8626 19 1 6.0467 3.0782 -4.2342 20 6 2.1976 -1.2687 0.0006 21 6 3.0773 -1.3501 -1.2486 22 6 3.0771 -1.3491 1.2499 23 6 1.2034 -2.4316 0.0004 24 6 1.9570 -3.7367 0.0004 25 8 3.1653 -3.7366 0.0000 26 8 1.2859 -4.8991 -0.0002 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3635 0.8899 0.5137 30 1 0.7583 2.5303 0.8892 31 1 0.7589 2.5299 -0.8908 32 1 2.3307 3.8463 2.1175 33 1 3.9196 5.7243 2.1219 34 1 4.8651 6.5625 0.0106 35 1 4.2297 5.5291 -2.1248 36 1 2.0617 2.9952 -4.8668 37 1 3.7856 -0.5216 -1.2488 38 1 3.6227 -2.2938 -1.2480 39 1 2.4507 -1.2927 -2.1387 40 1 2.4504 -1.2911 2.1398 41 1 3.6219 -2.2933 1.2505 42 1 3.7854 -0.5207 1.2497 43 1 0.5764 -2.3737 0.8902 44 1 0.5770 -2.3741 -0.8898 45 1 1.8126 -5.7102 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598036611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:17 Heat of formation + Delta-G solvation = -100.750387 kcal Electronic energy + Delta-G solvation = -28087.385947 eV Core-core repulsion = 24262.952790 eV Total energy + Delta-G solvation = -3824.433158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96172 -39.64292 -37.87941 -36.70067 -35.79824 -33.61876 -33.18511 -31.43073 -30.10623 -29.25036 -27.03271 -26.99646 -25.90985 -24.51550 -22.87258 -21.44549 -20.81696 -19.37991 -18.44187 -18.11405 -17.88474 -16.83315 -16.27432 -16.22391 -15.66063 -15.42445 -15.03729 -14.44014 -14.12485 -13.72361 -13.61157 -13.56943 -13.34404 -12.95256 -12.72445 -12.53236 -12.45879 -12.32274 -12.05003 -11.83592 -11.74166 -11.61527 -11.41423 -11.21637 -10.98299 -10.95396 -10.83958 -10.70612 -10.41461 -10.24330 -10.09558 -9.65487 -9.21959 -8.93486 -8.88076 -8.30514 -7.61061 -7.53822 -7.13294 -4.44975 1.97253 2.53157 2.73434 2.80005 3.29751 3.34351 3.46251 3.51550 3.71074 4.14028 4.35462 4.65683 4.71777 4.95310 5.08478 5.16415 5.30195 5.38066 5.40988 5.57955 5.65002 5.71366 5.82046 5.93169 5.95200 6.05678 6.11471 6.11858 6.18506 6.24076 6.25799 6.31504 6.58018 6.63496 6.76982 6.79576 6.96903 7.11078 7.40137 7.55872 7.67384 7.71628 7.75324 7.84140 7.90374 8.06204 8.45310 8.65349 8.85701 8.88069 10.12347 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.004366 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.931496 B = 6411.146735 C = 7145.816371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.625 5.625 3 C 0.525 3.475 4 O -0.506 6.506 5 C -0.068 4.068 6 C -0.171 4.171 7 C -0.068 4.068 8 C -0.245 4.245 9 C -0.076 4.076 10 C -0.245 4.245 11 C 0.116 3.884 12 C -0.511 4.511 13 H 0.074 0.926 14 C 0.048 3.952 15 N -0.824 5.824 16 Si 1.069 2.931 17 H -0.280 1.280 18 H -0.257 1.257 19 H -0.293 1.293 20 C 0.193 3.807 21 C -0.175 4.175 22 C -0.173 4.173 23 C -0.118 4.118 24 C 0.482 3.518 25 O -0.497 6.497 26 O -0.519 6.519 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.282 0.718 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 -12.239 8.628 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.363 5.363 3 C 0.314 3.686 4 O -0.379 6.379 5 C -0.107 4.107 6 C -0.173 4.173 7 C -0.086 4.086 8 C -0.265 4.265 9 C -0.094 4.094 10 C -0.264 4.264 11 C 0.113 3.887 12 C -0.540 4.540 13 H 0.092 0.908 14 C -0.170 4.170 15 N -0.447 5.447 16 Si 0.896 3.104 17 H -0.207 1.207 18 H -0.182 1.182 19 H -0.221 1.221 20 C 0.108 3.892 21 C -0.233 4.233 22 C -0.231 4.231 23 C -0.156 4.156 24 C 0.324 3.676 25 O -0.385 6.385 26 O -0.331 6.331 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -5.216 -11.720 7.763 14.995 hybrid contribution -1.536 -0.762 0.617 1.822 sum -6.752 -12.482 8.380 16.481 Atomic orbital electron populations 1.21851 0.80573 1.02945 1.01810 1.48108 1.06170 1.05294 1.76727 1.20910 0.88412 0.84345 0.74951 1.90626 1.13968 1.86628 1.46656 1.20301 0.97574 0.90554 1.02318 1.19035 1.05730 0.99306 0.93192 1.20409 0.96919 0.95709 0.95576 1.20317 1.06413 1.03383 0.96337 1.20600 0.97763 0.97962 0.93118 1.21124 1.07477 1.01046 0.96743 1.17495 0.89317 0.89514 0.92357 1.20500 1.02417 1.34439 0.96657 0.90828 1.27120 1.07376 0.91294 0.91232 1.70575 1.20071 1.32041 1.21977 0.83660 0.72785 0.76673 0.77291 1.20707 1.18162 1.22091 1.19943 0.90312 0.81240 0.97664 1.22457 1.00846 1.04973 0.95036 1.22451 1.00679 1.05044 0.94934 1.21726 0.99248 0.88520 1.06081 1.23176 0.86770 0.85722 0.71900 1.90675 1.15731 1.87467 1.44606 1.84524 1.45614 1.17200 1.85811 0.92766 0.91345 0.90767 0.90663 0.89053 0.89294 0.89071 0.88936 0.87841 0.90668 0.89561 0.90157 0.93331 0.93639 0.90038 0.89794 0.87108 0.87060 0.73099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.40 59.85 0.56 1.31 16 2 N -0.63 -9.43 2.82 -166.60 -0.47 -9.90 16 3 C 0.52 10.27 7.09 -10.98 -0.08 10.19 16 4 O -0.51 -11.98 12.24 5.56 0.07 -11.92 16 5 C -0.07 -1.30 3.91 -29.03 -0.11 -1.41 16 6 C -0.17 -3.95 4.43 -103.91 -0.46 -4.41 16 7 C -0.07 -1.48 9.66 -39.66 -0.38 -1.86 16 8 C -0.25 -5.33 10.05 -39.29 -0.39 -5.73 16 9 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 10 C -0.24 -6.16 7.26 -38.87 -0.28 -6.44 16 11 C 0.12 3.00 5.13 -106.83 -0.55 2.45 16 12 C -0.51 -13.70 8.80 -37.75 -0.33 -14.04 16 13 H 0.07 1.98 6.60 -52.49 -0.35 1.63 16 14 C 0.05 1.31 5.42 -17.34 -0.09 1.22 16 15 N -0.82 -22.64 13.65 55.55 0.76 -21.88 16 16 Si 1.07 26.37 24.89 -169.99 -4.23 22.14 16 17 H -0.28 -6.49 6.45 56.52 0.36 -6.12 16 18 H -0.26 -6.62 7.01 56.52 0.40 -6.22 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 C 0.19 2.76 0.78 -131.82 -0.10 2.66 16 21 C -0.18 -2.97 8.10 37.16 0.30 -2.67 16 22 C -0.17 -2.61 8.10 37.16 0.30 -2.31 16 23 C -0.12 -1.18 3.64 -27.88 -0.10 -1.28 16 24 C 0.48 5.05 7.74 36.01 0.28 5.33 16 25 O -0.50 -6.71 12.11 -18.75 -0.23 -6.94 16 26 O -0.52 -3.94 13.42 -39.24 -0.53 -4.46 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.51 5.76 -51.93 -0.30 0.21 16 29 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 30 H 0.08 1.18 7.31 -51.93 -0.38 0.80 16 31 H 0.09 1.75 6.48 -51.93 -0.34 1.41 16 32 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.10 2.60 4.43 -52.48 -0.23 2.36 16 36 H 0.28 7.49 8.73 -40.82 -0.36 7.13 16 37 H 0.09 1.80 6.17 -51.93 -0.32 1.48 16 38 H 0.08 1.31 5.52 -51.93 -0.29 1.02 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.21 5.52 -51.93 -0.29 0.93 16 42 H 0.08 1.54 6.17 -51.93 -0.32 1.22 16 43 H 0.11 0.86 6.88 -51.93 -0.36 0.50 16 44 H 0.11 0.97 7.78 -51.93 -0.40 0.56 16 45 H 0.41 1.46 9.10 45.56 0.41 1.88 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -33.22 350.75 -6.41 -39.63 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.22 Total: 7.18 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.85 Total: -19.13 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.29 Total: -31.78 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.69 Total: -23.32 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.23 Total: 22.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.22 -6.41 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598036611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.122 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds