Wall clock time and date at job start Tue Mar 31 2020 12:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34784 * 119.99589 * 2 1 4 4 O 1.21280 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99906 * 359.97438 * 3 2 1 6 6 C 1.50700 * 109.46813 * 180.02562 * 5 3 2 7 7 C 1.37640 * 120.13180 * 265.30632 * 6 5 3 8 8 C 1.38613 * 120.24862 * 180.32332 * 7 6 5 9 9 C 1.38655 * 120.50174 * 359.67182 * 8 7 6 10 10 C 1.37598 * 120.24576 * 359.97438 * 9 8 7 11 11 C 1.40702 * 120.12495 * 85.00356 * 6 5 3 12 12 C 1.41393 * 120.24620 * 359.97406 * 11 6 5 13 13 H 1.07999 * 119.99787 * 29.07372 * 12 11 6 14 14 C 1.39938 * 120.00244 * 209.07592 * 12 11 6 15 15 N 1.30823 * 120.00241 * 197.10039 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 17.09514 * 14 12 11 17 17 H 1.48495 * 109.47432 * 270.00073 * 16 14 12 18 18 H 1.48498 * 109.46929 * 30.00589 * 16 14 12 19 19 H 1.48504 * 109.46998 * 150.00206 * 16 14 12 20 20 C 1.46501 * 120.00443 * 179.97438 * 2 1 3 21 21 C 1.53002 * 109.46867 * 120.00330 * 20 2 1 22 22 C 1.52999 * 109.47151 * 240.00307 * 20 2 1 23 23 C 1.52995 * 109.46781 * 0.02562 * 20 2 1 24 24 C 1.50704 * 109.47082 * 179.97438 * 23 20 2 25 25 O 1.20831 * 119.99866 * 359.97438 * 24 23 20 26 26 O 1.34225 * 120.00185 * 180.02562 * 24 23 20 27 27 H 1.09005 * 109.46741 * 90.00898 * 1 2 3 28 28 H 1.09001 * 109.47242 * 209.99912 * 1 2 3 29 29 H 1.08995 * 109.47992 * 330.00474 * 1 2 3 30 30 H 1.08999 * 109.47299 * 60.00523 * 5 3 2 31 31 H 1.08998 * 109.47401 * 299.99992 * 5 3 2 32 32 H 1.08005 * 119.87130 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.74473 * 179.69460 * 8 7 6 34 34 H 1.08002 * 119.87493 * 180.02562 * 9 8 7 35 35 H 1.08003 * 120.12022 * 180.02562 * 10 9 8 36 36 H 0.97004 * 119.99819 * 355.45620 * 15 14 12 37 37 H 1.09004 * 109.46850 * 60.00630 * 21 20 2 38 38 H 1.08997 * 109.46884 * 179.97438 * 21 20 2 39 39 H 1.08998 * 109.47395 * 300.00458 * 21 20 2 40 40 H 1.09001 * 109.46853 * 60.00365 * 22 20 2 41 41 H 1.09000 * 109.46947 * 179.97438 * 22 20 2 42 42 H 1.08994 * 109.47717 * 300.00113 * 22 20 2 43 43 H 1.09001 * 109.47390 * 299.99737 * 23 20 2 44 44 H 1.09002 * 109.47570 * 59.99775 * 23 20 2 45 45 H 0.96706 * 116.99996 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3852 2.4724 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.7394 4.2068 1.1851 8 6 3.6348 5.2650 1.1869 9 6 4.1679 5.7378 -0.0026 10 6 3.8129 5.1594 -1.1996 11 6 2.9039 4.0852 -1.2137 12 6 2.5314 3.4834 -2.4377 13 1 1.5566 3.0304 -2.5422 14 6 3.4259 3.4746 -3.5139 15 7 2.9912 3.2330 -4.7239 16 14 5.2408 3.8080 -3.2226 17 1 5.5014 5.2652 -3.3397 18 1 5.6169 3.3455 -1.8626 19 1 6.0467 3.0782 -4.2342 20 6 2.1976 -1.2687 0.0006 21 6 3.0773 -1.3501 -1.2486 22 6 3.0771 -1.3491 1.2499 23 6 1.2034 -2.4316 0.0004 24 6 1.9570 -3.7367 0.0004 25 8 3.1653 -3.7366 0.0000 26 8 1.2859 -4.8991 -0.0002 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3635 0.8899 0.5137 30 1 0.7583 2.5303 0.8892 31 1 0.7589 2.5299 -0.8908 32 1 2.3307 3.8463 2.1175 33 1 3.9196 5.7243 2.1219 34 1 4.8651 6.5625 0.0106 35 1 4.2297 5.5291 -2.1248 36 1 2.0617 2.9952 -4.8668 37 1 3.7856 -0.5216 -1.2488 38 1 3.6227 -2.2938 -1.2480 39 1 2.4507 -1.2927 -2.1387 40 1 2.4504 -1.2911 2.1398 41 1 3.6219 -2.2933 1.2505 42 1 3.7854 -0.5207 1.2497 43 1 0.5764 -2.3737 0.8902 44 1 0.5770 -2.3741 -0.8898 45 1 1.8126 -5.7102 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598036611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:16 Heat of formation + Delta-G solvation = -123.229704 kcal Electronic energy + Delta-G solvation = -28088.360724 eV Core-core repulsion = 24262.952790 eV Total energy + Delta-G solvation = -3825.407934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94513 -40.87660 -39.54490 -37.76402 -36.86986 -35.58836 -34.47833 -32.99006 -31.98634 -30.20615 -28.60690 -28.32371 -26.97747 -26.37473 -23.96146 -23.18322 -22.16917 -20.93547 -20.02759 -19.35557 -19.10698 -17.75743 -17.56588 -17.27388 -17.03626 -16.82196 -16.36475 -16.10028 -15.81748 -15.45697 -14.99006 -14.85646 -14.59352 -14.36106 -13.94929 -13.90536 -13.72220 -13.60506 -13.50927 -13.31847 -13.08420 -12.93631 -12.72125 -12.61795 -12.56935 -12.21656 -12.13480 -12.12362 -12.04263 -11.92489 -11.58509 -11.34451 -11.12509 -10.85785 -10.39815 -9.55501 -9.53681 -9.32188 -9.13483 -6.46669 0.82203 0.91490 1.19851 1.29464 1.49739 1.70518 1.75862 1.88959 2.14551 2.48037 2.71413 3.34411 3.53955 3.80569 3.94971 4.07496 4.20879 4.26558 4.32627 4.41391 4.44324 4.49073 4.51324 4.54901 4.68207 4.72894 4.77486 4.84143 4.87460 4.90823 4.93709 4.98229 5.00896 5.26556 5.26917 5.35739 5.52489 5.62685 5.69732 5.80055 5.85142 5.91210 6.04237 6.20231 6.48423 6.54275 6.75909 6.90022 7.01884 7.45779 8.08486 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.004366 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.931496 B = 6411.146735 C = 7145.816371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.617 5.617 3 C 0.518 3.482 4 O -0.559 6.559 5 C -0.067 4.067 6 C -0.173 4.173 7 C -0.079 4.079 8 C -0.231 4.231 9 C -0.089 4.089 10 C -0.267 4.267 11 C 0.087 3.913 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.017 3.983 15 N -0.854 5.854 16 Si 1.095 2.905 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.289 1.289 20 C 0.190 3.810 21 C -0.169 4.169 22 C -0.165 4.165 23 C -0.112 4.112 24 C 0.489 3.511 25 O -0.536 6.536 26 O -0.508 6.508 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.277 0.723 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.147 0.853 44 H 0.132 0.868 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 -13.036 11.509 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.352 5.352 3 C 0.307 3.693 4 O -0.437 6.437 5 C -0.106 4.106 6 C -0.175 4.175 7 C -0.097 4.097 8 C -0.250 4.250 9 C -0.107 4.107 10 C -0.286 4.286 11 C 0.084 3.916 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.479 5.479 16 Si 0.920 3.080 17 H -0.183 1.183 18 H -0.206 1.206 19 H -0.217 1.217 20 C 0.106 3.894 21 C -0.227 4.227 22 C -0.222 4.222 23 C -0.149 4.149 24 C 0.332 3.668 25 O -0.427 6.427 26 O -0.321 6.321 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.165 0.835 44 H 0.150 0.850 45 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -7.311 -12.544 10.641 18.001 hybrid contribution -0.957 -0.543 -0.023 1.100 sum -8.268 -13.087 10.618 18.772 Atomic orbital electron populations 1.22257 0.77305 1.05692 1.03034 1.48073 1.08168 1.04247 1.74713 1.20984 0.87831 0.85729 0.74717 1.90623 1.16168 1.87548 1.49329 1.20333 0.96990 0.89256 1.04025 1.19541 1.05268 0.99842 0.92816 1.20878 0.96826 0.95540 0.96478 1.20874 1.04479 1.02284 0.97388 1.20987 0.98355 0.98758 0.92642 1.21300 1.08019 1.01621 0.97706 1.17774 0.90502 0.90172 0.93128 1.20440 1.02087 1.35761 0.97628 0.92218 1.27722 1.09151 0.91400 0.91365 1.70608 1.19851 1.35199 1.22286 0.83285 0.71040 0.77840 0.75835 1.18334 1.20560 1.21656 1.19927 0.91162 0.82692 0.95624 1.22368 1.00513 1.03064 0.96792 1.22330 1.00394 1.03249 0.96275 1.21672 0.98171 0.86265 1.08809 1.23186 0.86136 0.86575 0.70863 1.90678 1.17399 1.88020 1.46607 1.84469 1.45385 1.17315 1.84972 0.92320 0.87156 0.89582 0.86497 0.89538 0.85754 0.85468 0.85971 0.88637 0.91204 0.94326 0.89804 0.93620 0.91409 0.90077 0.93825 0.83487 0.85049 0.70897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 9.40 127.77 1.20 2.21 16 2 N -0.62 -17.59 2.82 -799.38 -2.26 -19.85 16 3 C 0.52 20.19 7.09 87.66 0.62 20.81 16 4 O -0.56 -27.51 12.24 -3.03 -0.04 -27.55 16 5 C -0.07 -2.47 3.91 29.10 0.11 -2.35 16 6 C -0.17 -7.88 4.43 -19.40 -0.09 -7.96 16 7 C -0.08 -3.23 9.66 22.22 0.21 -3.02 16 8 C -0.23 -9.32 10.05 22.46 0.23 -9.09 16 9 C -0.09 -3.91 10.02 22.22 0.22 -3.68 16 10 C -0.27 -13.52 7.26 22.73 0.16 -13.36 16 11 C 0.09 4.55 5.13 -21.29 -0.11 4.45 16 12 C -0.53 -29.63 8.80 23.46 0.21 -29.42 16 13 H 0.06 3.38 6.60 -2.91 -0.02 3.37 16 14 C 0.02 0.95 5.42 85.26 0.46 1.41 16 15 N -0.85 -49.26 13.65 21.82 0.30 -48.96 16 16 Si 1.09 55.60 24.89 68.60 1.71 57.30 16 17 H -0.26 -11.94 6.45 99.48 0.64 -11.30 16 18 H -0.28 -15.07 7.01 99.48 0.70 -14.37 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 20 C 0.19 5.24 0.78 3.60 0.00 5.24 16 21 C -0.17 -5.97 8.10 71.98 0.58 -5.39 16 22 C -0.16 -4.87 8.10 71.98 0.58 -4.29 16 23 C -0.11 -1.84 3.64 29.85 0.11 -1.73 16 24 C 0.49 8.93 7.74 71.24 0.55 9.48 16 25 O -0.54 -13.94 12.11 21.95 0.27 -13.67 16 26 O -0.51 -5.90 13.42 -51.37 -0.69 -6.58 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.11 1.00 5.76 -2.39 -0.01 0.98 16 29 H 0.09 1.31 6.44 -2.39 -0.02 1.30 16 30 H 0.12 3.25 7.31 -2.39 -0.02 3.23 16 31 H 0.09 3.29 6.48 -2.39 -0.02 3.27 16 32 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.10 4.88 4.43 -2.91 -0.01 4.86 16 36 H 0.28 15.57 8.73 -92.71 -0.81 14.76 16 37 H 0.04 1.72 6.17 -2.38 -0.01 1.71 16 38 H 0.08 2.85 5.52 -2.39 -0.01 2.83 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 2.40 5.52 -2.39 -0.01 2.39 16 42 H 0.04 1.65 6.17 -2.39 -0.01 1.64 16 43 H 0.15 1.40 6.88 -2.39 -0.02 1.39 16 44 H 0.13 1.72 7.78 -2.39 -0.02 1.70 16 45 H 0.43 1.72 9.10 -74.05 -0.67 1.04 16 Total: -1.00 -78.35 350.75 4.60 -73.75 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.25 Total: 22.27 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 5.07 Total: -36.71 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -1.96 Total: -68.81 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.46 Total: -47.81 kcal Atomic # 14 Polarization: 55.60 SS G_CDS: 1.71 Total: 57.30 kcal Total: -78.35 4.60 -73.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598036611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.480 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds