Wall clock time and date at job start Tue Mar 31 2020 12:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47442 * 2 1 4 4 C 1.52998 * 109.47163 * 240.00095 * 2 1 3 5 5 C 1.53001 * 109.47016 * 120.00141 * 2 1 3 6 6 N 1.46506 * 109.47101 * 60.00361 * 5 2 1 7 7 C 1.46505 * 119.99526 * 269.99448 * 6 5 2 8 8 C 1.50693 * 109.47343 * 278.77755 * 7 6 5 9 9 O 1.20834 * 120.00063 * 0.02562 * 8 7 6 10 10 O 1.34227 * 120.00322 * 179.97438 * 8 7 6 11 11 C 1.34767 * 120.00247 * 90.00035 * 6 5 2 12 12 O 1.21591 * 120.00177 * 6.70958 * 11 6 5 13 13 C 1.47646 * 120.00201 * 186.71465 * 11 6 5 14 14 C 1.40010 * 119.90016 * 149.28324 * 13 11 6 15 15 C 1.36314 * 120.10249 * 180.25677 * 14 13 11 16 16 C 1.40881 * 119.89758 * 359.51611 * 15 14 13 17 17 C 1.41111 * 120.10598 * 180.23139 * 16 15 14 18 18 H 1.08007 * 120.00210 * 206.44093 * 17 16 15 19 19 C 1.40227 * 119.99937 * 26.44368 * 17 16 15 20 20 N 1.30645 * 119.99851 * 25.93163 * 19 17 16 21 21 Si 1.86804 * 119.99978 * 205.93136 * 19 17 16 22 22 H 1.48497 * 109.46894 * 94.98877 * 21 19 17 23 23 H 1.48498 * 109.46836 * 214.98898 * 21 19 17 24 24 H 1.48496 * 109.47192 * 334.98944 * 21 19 17 25 25 C 1.40889 * 119.79235 * 0.50692 * 16 15 14 26 26 C 1.36319 * 119.88746 * 359.72511 * 25 16 15 27 27 H 1.08997 * 109.46780 * 299.99751 * 1 2 3 28 28 H 1.08993 * 109.47048 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47839 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47340 * 300.00238 * 3 2 1 32 32 H 1.09005 * 109.46983 * 59.99699 * 3 2 1 33 33 H 1.09007 * 109.47325 * 299.99849 * 4 2 1 34 34 H 1.09003 * 109.47338 * 59.99415 * 4 2 1 35 35 H 1.09001 * 109.47338 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47434 * 299.99707 * 5 2 1 37 37 H 1.09001 * 109.46959 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46642 * 38.77964 * 7 6 5 39 39 H 1.09000 * 109.47052 * 158.77837 * 7 6 5 40 40 H 0.96703 * 117.00631 * 179.97438 * 10 8 7 41 41 H 1.07992 * 119.94662 * 359.97438 * 14 13 11 42 42 H 1.08006 * 120.05040 * 179.72536 * 15 14 13 43 43 H 0.96997 * 120.00120 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.05515 * 179.71065 * 25 16 15 45 45 H 1.08001 * 119.94094 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.5517 -2.1026 1.2491 7 6 0.2716 -2.4269 1.8836 8 6 0.4687 -2.5639 3.3713 9 8 1.5659 -2.4063 3.8524 10 8 -0.5746 -2.8600 4.1621 11 6 2.2801 -3.0748 0.6656 12 8 3.3955 -2.8309 0.2475 13 6 1.7236 -4.4360 0.5338 14 6 2.0991 -5.2418 -0.5478 15 6 1.5839 -6.4973 -0.6763 16 6 0.6800 -6.9874 0.2868 17 6 0.1477 -8.2882 0.1608 18 1 -0.8123 -8.5234 0.5962 19 6 0.8652 -9.2754 -0.5299 20 7 2.1666 -9.1981 -0.6147 21 14 -0.0398 -10.7011 -1.3285 22 1 -0.2942 -10.3876 -2.7575 23 1 0.7883 -11.9299 -1.2311 24 1 -1.3329 -10.9191 -0.6318 25 6 0.3047 -6.1726 1.3732 26 6 0.8216 -4.9167 1.4908 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2490 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7217 1.2490 38 1 -0.4450 -1.6303 1.6838 39 1 -0.1067 -3.3658 1.4792 40 1 -0.3991 -2.9380 5.1099 41 1 2.7945 -4.8665 -1.2838 42 1 1.8707 -7.1166 -1.5134 43 1 2.6630 -9.8812 -1.0921 44 1 -0.3915 -6.5424 2.1115 45 1 0.5348 -4.2915 2.3234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602867676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:10 Heat of formation + Delta-G solvation = -92.342376 kcal Electronic energy + Delta-G solvation = -27919.637960 eV Core-core repulsion = 24095.569401 eV Total energy + Delta-G solvation = -3824.068559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.79410 -39.33103 -37.69729 -36.58087 -36.05650 -34.56776 -33.77060 -30.34643 -29.96155 -28.57557 -27.24249 -27.10602 -26.70161 -25.02740 -22.21187 -21.47307 -21.18403 -19.33744 -18.48374 -18.09794 -17.79508 -16.79731 -16.38155 -16.12905 -15.62787 -15.32356 -14.87526 -14.42658 -14.26739 -13.82402 -13.65288 -13.40014 -13.13817 -13.03124 -12.70814 -12.54115 -12.31629 -12.15141 -12.02657 -11.71137 -11.52997 -11.47838 -11.45172 -11.31875 -11.24705 -11.08999 -10.82882 -10.73083 -10.65993 -10.54323 -10.50552 -10.05899 -9.53719 -9.33658 -8.97149 -8.41701 -7.75729 -7.64678 -7.11650 -4.62058 2.15623 2.27176 2.82050 2.90226 2.93391 2.97502 2.99239 3.43868 3.72419 3.81696 4.41316 4.82008 4.84581 4.96782 5.05300 5.23277 5.36458 5.40083 5.52652 5.57700 5.60439 5.68553 5.77936 5.79672 5.87688 5.98016 6.05375 6.08497 6.12206 6.19380 6.26069 6.41022 6.54088 6.61308 6.72218 6.76994 6.84680 6.93755 7.01497 7.36052 7.51300 7.63238 7.78685 7.90956 7.97026 8.03763 8.34929 8.57168 8.68822 8.91579 9.83202 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.003772 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.111443 B = 7421.841400 C = 8302.391704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.134 4.134 5 C 0.130 3.870 6 N -0.599 5.599 7 C 0.085 3.915 8 C 0.455 3.545 9 O -0.503 6.503 10 O -0.518 6.518 11 C 0.582 3.418 12 O -0.550 6.550 13 C -0.284 4.284 14 C -0.033 4.033 15 C -0.182 4.182 16 C 0.131 3.869 17 C -0.449 4.449 18 H 0.087 0.913 19 C 0.080 3.920 20 N -0.759 5.759 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.258 1.258 25 C -0.228 4.228 26 C -0.075 4.075 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.162 0.838 40 H 0.407 0.593 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.289 0.711 44 H 0.099 0.901 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 12.327 2.097 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.195 4.195 4 C -0.192 4.192 5 C 0.007 3.993 6 N -0.332 5.332 7 C -0.041 4.041 8 C 0.295 3.705 9 O -0.390 6.390 10 O -0.329 6.329 11 C 0.378 3.622 12 O -0.429 6.429 13 C -0.288 4.288 14 C -0.052 4.052 15 C -0.201 4.201 16 C 0.127 3.873 17 C -0.476 4.476 18 H 0.105 0.895 19 C -0.143 4.143 20 N -0.381 5.381 21 Si 0.731 3.269 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.181 1.181 25 C -0.248 4.248 26 C -0.094 4.094 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.179 0.821 40 H 0.266 0.734 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.411 12.408 1.510 13.620 hybrid contribution -0.143 -0.755 0.549 0.945 sum -5.554 11.652 2.059 13.071 Atomic orbital electron populations 1.22013 0.94842 1.02142 1.01305 1.20980 0.95807 0.95362 0.96587 1.21790 1.01207 0.94997 1.01474 1.21831 1.01547 1.00387 0.95407 1.21435 1.00758 0.80898 0.96211 1.47405 1.20857 1.08078 1.56812 1.22109 0.88664 1.08274 0.85019 1.24423 0.82088 0.72437 0.91537 1.90741 1.26339 1.45687 1.76227 1.84552 1.41120 1.82790 1.24450 1.18609 0.83879 0.84513 0.75219 1.90661 1.18829 1.83071 1.50365 1.18824 1.11108 0.94711 1.04175 1.20339 0.95963 0.93548 0.95346 1.20800 1.03789 0.94676 1.00855 1.17721 0.88617 0.92302 0.88628 1.19808 1.04671 0.94216 1.28918 0.89466 1.26088 0.94421 0.99957 0.93866 1.69787 1.07392 1.32733 1.28144 0.86293 0.80756 0.79396 0.80453 1.18874 1.20017 1.18141 1.20682 1.08093 0.95605 1.00379 1.20852 0.95858 0.95902 0.96764 0.93014 0.92673 0.91824 0.92497 0.92538 0.92875 0.92237 0.93542 0.92143 0.91531 0.89633 0.87004 0.82108 0.73439 0.88392 0.87192 0.90002 0.88285 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.24 37.16 0.27 -1.27 16 2 C -0.09 -1.06 0.84 -154.51 -0.13 -1.19 16 3 C -0.14 -1.38 8.47 37.15 0.31 -1.07 16 4 C -0.13 -1.93 7.25 37.16 0.27 -1.66 16 5 C 0.13 1.89 4.44 -4.04 -0.02 1.87 16 6 N -0.60 -9.99 1.54 -176.25 -0.27 -10.26 16 7 C 0.08 1.20 4.65 -5.19 -0.02 1.18 16 8 C 0.46 6.67 6.43 36.00 0.23 6.90 16 9 O -0.50 -9.13 17.04 -18.76 -0.32 -9.45 16 10 O -0.52 -5.85 13.42 -39.25 -0.53 -6.38 16 11 C 0.58 12.19 5.63 -12.42 -0.07 12.12 16 12 O -0.55 -12.90 15.02 5.29 0.08 -12.82 16 13 C -0.28 -6.35 5.59 -104.73 -0.59 -6.93 16 14 C -0.03 -0.77 9.52 -39.61 -0.38 -1.15 16 15 C -0.18 -4.50 8.67 -39.27 -0.34 -4.84 16 16 C 0.13 3.23 5.53 -106.80 -0.59 2.64 16 17 C -0.45 -10.91 8.98 -37.75 -0.34 -11.25 16 18 H 0.09 2.01 7.97 -52.48 -0.42 1.59 16 19 C 0.08 1.86 4.91 -17.31 -0.09 1.77 16 20 N -0.76 -18.40 11.62 55.56 0.65 -17.75 16 21 Si 0.91 17.02 29.63 -169.99 -5.04 11.99 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 25 C -0.23 -5.16 9.73 -39.27 -0.38 -5.54 16 26 C -0.08 -1.59 7.39 -39.61 -0.29 -1.88 16 27 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.72 5.84 -51.93 -0.30 0.42 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 1.00 6.23 -51.93 -0.32 0.68 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.95 7.89 -51.93 -0.41 0.54 16 36 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.09 1.42 7.34 -51.93 -0.38 1.04 16 38 H 0.11 1.21 5.71 -51.93 -0.30 0.92 16 39 H 0.16 2.47 4.02 -52.07 -0.21 2.26 16 40 H 0.41 2.95 9.10 45.56 0.41 3.37 16 41 H 0.10 2.25 7.92 -52.49 -0.42 1.84 16 42 H 0.11 2.77 6.60 -52.48 -0.35 2.42 16 43 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 44 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 45 H 0.10 1.81 3.19 -52.49 -0.17 1.65 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -30.18 359.95 -7.52 -37.71 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.37 Total: 11.86 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.15 Total: -10.31 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.37 Total: -28.02 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.77 Total: -28.65 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.04 Total: 11.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.18 -7.52 -37.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602867676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.637 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds