Wall clock time and date at job start Tue Mar 31 2020 13:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47274 * 2 1 4 4 C 1.53005 * 109.47156 * 119.99756 * 2 1 3 5 5 H 1.09001 * 109.47110 * 305.35053 * 4 2 1 6 6 C 1.52994 * 109.47313 * 185.34943 * 4 2 1 7 7 N 1.46500 * 109.47239 * 175.15531 * 6 4 2 8 8 C 1.34773 * 120.00132 * 184.68057 * 7 6 4 9 9 O 1.21279 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99917 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.47339 * 300.00180 * 10 8 7 12 12 C 1.50696 * 109.46998 * 60.00605 * 10 8 7 13 13 H 1.07996 * 120.00273 * 34.63840 * 12 10 8 14 14 C 1.37881 * 119.99777 * 214.63453 * 12 10 8 15 15 N 1.31514 * 119.99927 * 185.95541 * 14 12 10 16 16 Si 1.86800 * 120.00216 * 5.96181 * 14 12 10 17 17 H 1.48491 * 109.47118 * 266.63715 * 16 14 12 18 18 H 1.48499 * 109.46801 * 26.63270 * 16 14 12 19 19 H 1.48502 * 109.47194 * 146.63496 * 16 14 12 20 20 C 1.50704 * 109.47038 * 180.02562 * 10 8 7 21 21 C 1.38234 * 119.99967 * 293.99058 * 20 10 8 22 22 C 1.38244 * 119.99629 * 179.78593 * 21 20 10 23 23 C 1.38236 * 119.99836 * 0.44175 * 22 21 20 24 24 C 1.38236 * 120.00178 * 359.80974 * 23 22 21 25 25 C 1.38233 * 120.00111 * 359.97438 * 24 23 22 26 26 C 1.50698 * 109.47080 * 65.34530 * 4 2 1 27 27 O 1.20822 * 119.99781 * 119.99703 * 26 4 2 28 28 O 1.34227 * 120.00381 * 300.00472 * 26 4 2 29 29 H 1.09002 * 109.46760 * 300.00176 * 1 2 3 30 30 H 1.08997 * 109.46372 * 60.00232 * 1 2 3 31 31 H 1.09000 * 109.46787 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47201 * 239.99549 * 2 1 3 33 33 H 1.09001 * 109.47010 * 185.79967 * 3 2 1 34 34 H 1.08997 * 109.46989 * 305.79784 * 3 2 1 35 35 H 1.08994 * 109.47478 * 65.79930 * 3 2 1 36 36 H 1.09004 * 109.47040 * 55.15314 * 6 4 2 37 37 H 1.09009 * 109.46980 * 295.15675 * 6 4 2 38 38 H 0.97001 * 119.99870 * 4.68607 * 7 6 4 39 39 H 0.97003 * 120.00101 * 180.02562 * 15 14 12 40 40 H 1.07990 * 120.00628 * 359.97438 * 21 20 10 41 41 H 1.07998 * 119.99950 * 180.27600 * 22 21 20 42 42 H 1.08004 * 119.99809 * 179.83161 * 23 22 21 43 43 H 1.08001 * 119.99732 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.99805 * 180.02562 * 25 24 23 45 45 H 0.96697 * 117.00247 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6006 -0.2657 2.1367 6 6 3.5641 -0.6058 1.3184 7 7 4.0421 -1.1950 2.5716 8 6 5.3485 -1.1230 2.8949 9 8 6.1283 -0.5700 2.1486 10 6 5.8402 -1.7286 4.1843 11 1 5.3343 -1.2536 5.0249 12 6 5.5448 -3.2063 4.1900 13 1 5.5915 -3.7699 3.2699 14 6 5.2148 -3.8388 5.3699 15 7 5.0718 -5.1459 5.3976 16 14 4.9707 -2.8393 6.9290 17 1 6.2464 -2.7852 7.6870 18 1 4.5481 -1.4611 6.5723 19 1 3.9236 -3.4770 7.7669 20 6 7.3266 -1.5125 4.3061 21 6 8.1897 -2.1298 3.4201 22 6 9.5530 -1.9280 3.5291 23 6 10.0536 -1.1163 4.5298 24 6 9.1909 -0.5033 5.4190 25 6 7.8274 -0.7014 5.3073 26 6 1.6487 -2.1751 1.1850 27 8 2.5013 -3.0311 1.1934 28 8 0.3530 -2.5191 1.1182 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1251 1.4442 -0.1038 34 1 1.5945 1.9854 -0.8335 35 1 1.7640 1.9255 0.9373 36 1 3.8511 0.4450 1.2782 37 1 4.0072 -1.1360 0.4753 38 1 3.4184 -1.6371 3.1687 39 1 4.8393 -5.5909 6.2276 40 1 7.7988 -2.7671 2.6408 41 1 10.2269 -2.4067 2.8342 42 1 11.1189 -0.9609 4.6167 43 1 9.5822 0.1306 6.2011 44 1 7.1534 -0.2221 6.0018 45 1 0.1511 -3.4639 1.0782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602978590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:21 Heat of formation + Delta-G solvation = -141.179920 kcal Electronic energy + Delta-G solvation = -27451.078197 eV Core-core repulsion = 23624.891883 eV Total energy + Delta-G solvation = -3826.186314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73408 -40.82606 -39.42926 -37.80667 -37.15917 -35.53275 -35.00174 -33.33935 -31.62456 -30.75938 -29.30395 -28.29539 -26.07191 -24.99151 -23.37444 -22.95294 -22.24418 -21.38481 -20.52645 -19.16741 -19.11448 -18.04503 -17.89970 -17.72911 -17.09469 -16.47937 -16.34033 -15.97200 -15.57607 -15.42250 -14.97347 -14.84398 -14.65817 -14.42947 -14.35509 -14.10135 -13.83885 -13.69520 -13.44074 -13.42660 -13.02409 -12.93721 -12.78498 -12.72959 -12.56971 -12.03322 -11.98681 -11.93206 -11.67652 -11.64706 -11.56918 -11.40917 -11.38267 -10.90334 -10.54475 -9.93239 -9.64274 -9.37195 -8.34226 -6.42705 0.64627 0.71088 1.22293 1.30842 1.36597 1.42722 1.85441 2.06935 2.29346 2.43912 2.95318 3.16298 3.41745 3.72453 3.92425 4.09956 4.21461 4.22901 4.27336 4.35278 4.36855 4.38991 4.39822 4.57806 4.61464 4.71227 4.81671 4.83207 4.90527 4.91762 5.05386 5.14758 5.19575 5.24955 5.31915 5.40414 5.44015 5.57042 5.61186 5.65968 5.70005 5.74161 5.95438 6.20703 6.30961 6.59999 6.64281 7.01033 7.21193 7.43327 8.81453 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.004398 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.666039 B = 6364.632461 C = 7573.391289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.077 4.077 3 C -0.150 4.150 4 C -0.080 4.080 5 H 0.137 0.863 6 C 0.132 3.868 7 N -0.715 5.715 8 C 0.531 3.469 9 O -0.587 6.587 10 C 0.021 3.979 11 H 0.084 0.916 12 C -0.497 4.497 13 H 0.026 0.974 14 C 0.030 3.970 15 N -0.934 5.934 16 Si 0.927 3.073 17 H -0.267 1.267 18 H -0.228 1.228 19 H -0.279 1.279 20 C -0.055 4.055 21 C -0.106 4.106 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.150 4.150 26 C 0.476 3.524 27 O -0.542 6.542 28 O -0.500 6.500 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.403 0.597 39 H 0.269 0.731 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.125 0.875 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.535 13.774 -4.984 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.096 4.096 3 C -0.207 4.207 4 C -0.099 4.099 5 H 0.155 0.845 6 C 0.009 3.991 7 N -0.365 5.365 8 C 0.320 3.680 9 O -0.468 6.468 10 C -0.001 4.001 11 H 0.101 0.899 12 C -0.535 4.535 13 H 0.044 0.956 14 C -0.170 4.170 15 N -0.572 5.572 16 Si 0.750 3.250 17 H -0.192 1.192 18 H -0.151 1.151 19 H -0.205 1.205 20 C -0.056 4.056 21 C -0.124 4.124 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.140 4.140 25 C -0.168 4.168 26 C 0.319 3.681 27 O -0.431 6.431 28 O -0.313 6.313 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.143 0.857 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -7.744 14.177 -5.412 17.037 hybrid contribution -0.485 -1.723 0.609 1.891 sum -8.228 12.454 -4.803 15.681 Atomic orbital electron populations 1.22023 0.92338 1.03612 1.02924 1.21016 0.97933 0.96756 0.93914 1.21941 1.01068 0.94081 1.03623 1.21542 0.94955 0.88621 1.04795 0.84527 1.21365 0.91905 0.99384 0.86461 1.45755 1.08947 1.58781 1.22984 1.21002 0.81846 0.76829 0.88367 1.90549 1.55772 1.46375 1.54072 1.18534 0.91307 0.96395 0.93827 0.89864 1.20413 1.47682 0.90602 0.94806 0.95575 1.25840 0.93606 0.95638 1.01893 1.70042 1.48366 1.10080 1.28736 0.85984 0.79128 0.80697 0.79162 1.19170 1.15127 1.20497 1.20083 0.95888 0.94605 0.94979 1.20795 0.94232 0.98824 0.98550 1.21336 0.94345 0.99822 0.99725 1.21348 1.00805 0.97923 0.95313 1.21380 0.92497 1.00259 0.99908 1.21253 0.96948 0.99719 0.98922 1.23739 0.80362 0.92852 0.71183 1.90898 1.52529 1.53473 1.46181 1.84528 1.26602 1.35458 1.84713 0.91569 0.91155 0.91052 0.91184 0.92935 0.90413 0.91170 0.88480 0.93869 0.76238 0.92146 0.90067 0.85028 0.83113 0.83096 0.85667 0.71805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.85 71.98 0.64 -1.40 16 2 C -0.08 -1.29 2.50 -10.79 -0.03 -1.32 16 3 C -0.15 -2.16 8.49 71.98 0.61 -1.55 16 4 C -0.08 -1.80 1.98 -11.54 -0.02 -1.82 16 5 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 6 C 0.13 4.10 4.29 86.38 0.37 4.47 16 7 N -0.71 -27.89 4.77 -463.06 -2.21 -30.09 16 8 C 0.53 24.70 7.04 87.66 0.62 25.32 16 9 O -0.59 -29.45 15.41 -3.03 -0.05 -29.50 16 10 C 0.02 0.99 1.98 -13.03 -0.03 0.97 16 11 H 0.08 3.73 4.56 -2.39 -0.01 3.72 16 12 C -0.50 -28.14 8.02 25.60 0.21 -27.94 16 13 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 14 C 0.03 1.67 5.47 84.66 0.46 2.14 16 15 N -0.93 -57.05 13.96 21.45 0.30 -56.75 16 16 Si 0.93 41.23 27.61 68.60 1.89 43.12 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.23 -8.82 5.96 99.48 0.59 -8.23 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 C -0.05 -2.55 4.30 -19.86 -0.09 -2.64 16 21 C -0.11 -5.01 8.31 22.27 0.19 -4.82 16 22 C -0.13 -5.18 10.05 22.27 0.22 -4.96 16 23 C -0.14 -4.45 10.05 22.27 0.22 -4.22 16 24 C -0.12 -4.06 10.05 22.27 0.22 -3.84 16 25 C -0.15 -5.94 9.67 22.27 0.22 -5.73 16 26 C 0.48 12.94 7.23 71.24 0.52 13.46 16 27 O -0.54 -21.13 15.97 21.98 0.35 -20.77 16 28 O -0.50 -9.55 10.58 -51.38 -0.54 -10.09 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.07 5.47 -2.39 -0.01 1.05 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 0.89 6.59 -2.39 -0.02 0.88 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 2.73 6.19 -2.38 -0.01 2.71 16 37 H 0.04 1.56 7.96 -2.38 -0.02 1.54 16 38 H 0.40 15.48 7.87 -92.71 -0.73 14.75 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.08 4.28 7.89 -2.92 -0.02 4.26 16 41 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.13 4.38 7.95 -2.91 -0.02 4.36 16 45 H 0.42 5.53 9.10 -74.06 -0.67 4.85 16 Total: -1.00 -79.28 369.72 3.58 -75.70 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -0.50 Total: 42.26 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.33 Total: -13.87 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -1.91 Total: -86.85 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -0.24 Total: -60.36 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.89 Total: 43.12 kcal Total: -79.28 3.58 -75.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602978590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.479 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds