Wall clock time and date at job start Tue Mar 31 2020 13:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 C 1.52998 * 109.46987 * 120.00364 * 2 1 3 5 5 H 1.09004 * 109.47192 * 300.00068 * 4 2 1 6 6 C 1.53000 * 109.47125 * 59.99510 * 4 2 1 7 7 N 1.46506 * 109.47218 * 184.99979 * 6 4 2 8 8 C 1.34774 * 120.00064 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00169 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00043 * 180.02562 * 8 7 6 11 11 H 1.09001 * 109.47138 * 59.99704 * 10 8 7 12 12 C 1.50707 * 109.46778 * 300.00180 * 10 8 7 13 13 H 1.08003 * 120.00058 * 324.87958 * 12 10 8 14 14 C 1.37877 * 119.99871 * 144.87728 * 12 10 8 15 15 N 1.31523 * 119.99785 * 5.19539 * 14 12 10 16 16 Si 1.86798 * 120.00209 * 185.19012 * 14 12 10 17 17 H 1.48501 * 109.46739 * 60.00233 * 16 14 12 18 18 H 1.48496 * 109.47169 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47121 * 300.00333 * 16 14 12 20 20 C 1.50694 * 109.47351 * 180.02562 * 10 8 7 21 21 C 1.38238 * 120.00186 * 66.01081 * 20 10 8 22 22 C 1.38227 * 120.00127 * 179.81332 * 21 20 10 23 23 C 1.38238 * 120.00166 * 0.39553 * 22 21 20 24 24 C 1.38238 * 119.99740 * 359.85394 * 23 22 21 25 25 C 1.38234 * 119.99957 * 359.95912 * 24 23 22 26 26 C 1.50698 * 109.47264 * 179.97438 * 4 2 1 27 27 O 1.20825 * 120.00026 * 239.99534 * 26 4 2 28 28 O 1.34229 * 119.99909 * 60.00065 * 26 4 2 29 29 H 1.09004 * 109.47179 * 300.00136 * 1 2 3 30 30 H 1.09006 * 109.46780 * 59.99522 * 1 2 3 31 31 H 1.08998 * 109.47659 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46657 * 239.99895 * 2 1 3 33 33 H 1.09004 * 109.46929 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47286 * 300.00014 * 3 2 1 35 35 H 1.09005 * 109.46887 * 60.00573 * 3 2 1 36 36 H 1.09001 * 109.47167 * 65.00447 * 6 4 2 37 37 H 1.09001 * 109.47446 * 304.99749 * 6 4 2 38 38 H 0.96998 * 119.99806 * 0.02562 * 7 6 4 39 39 H 0.96999 * 119.99749 * 180.02562 * 15 14 12 40 40 H 1.08004 * 119.99605 * 359.97438 * 21 20 10 41 41 H 1.08005 * 120.00142 * 180.22517 * 22 21 20 42 42 H 1.08000 * 120.00247 * 179.83436 * 23 22 21 43 43 H 1.07999 * 119.99909 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.99940 * 179.97438 * 25 24 23 45 45 H 0.96698 * 117.00341 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 1.5298 -2.1638 1.2491 7 7 1.9174 -2.8189 2.5010 8 6 1.5733 -4.1027 2.7243 9 8 0.9432 -4.7158 1.8889 10 6 1.9714 -4.7764 4.0123 11 1 1.5369 -4.2370 4.8539 12 6 3.4734 -4.7750 4.1363 13 1 4.0881 -4.8853 3.2552 14 6 4.0626 -4.6331 5.3747 15 7 3.3173 -4.6015 6.4579 16 14 5.9196 -4.4857 5.5142 17 1 6.3795 -3.2925 4.7592 18 1 6.2990 -4.3434 6.9428 19 1 6.5564 -5.7034 4.9513 20 6 1.4691 -6.1971 4.0122 21 6 1.9797 -7.1108 3.1091 22 6 1.5217 -8.4149 3.1117 23 6 0.5472 -8.8036 4.0118 24 6 0.0329 -7.8887 4.9114 25 6 0.4937 -6.5854 4.9115 26 6 3.5469 -0.7219 1.2489 27 8 4.1507 -1.7685 1.2490 28 8 4.2185 0.4403 1.2487 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8901 36 1 1.9645 -2.7029 0.4074 37 1 0.4435 -2.1651 1.1597 38 1 2.4210 -2.3284 3.1693 39 1 3.7318 -4.5012 7.3291 40 1 2.7384 -6.8061 2.4034 41 1 1.9233 -9.1297 2.4085 42 1 0.1875 -9.8219 4.0120 43 1 -0.7287 -8.1922 5.6144 44 1 0.0916 -5.8705 5.6140 45 1 5.1842 0.3894 1.2490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602978593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:34 Heat of formation + Delta-G solvation = -122.228523 kcal Electronic energy + Delta-G solvation = -27412.817099 eV Core-core repulsion = 23587.452580 eV Total energy + Delta-G solvation = -3825.364520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.58767 -39.00707 -37.73687 -36.70761 -36.10650 -33.60500 -33.49248 -31.03046 -29.87286 -29.50973 -27.63999 -27.18490 -24.59272 -23.52517 -21.89080 -21.52538 -20.65098 -20.20870 -19.04113 -18.10272 -17.01021 -16.67714 -16.16634 -15.94457 -15.67157 -15.11882 -14.51239 -14.39863 -14.14458 -13.99324 -13.73835 -13.55717 -13.33590 -12.91706 -12.64094 -12.47348 -12.35081 -12.30264 -12.16402 -11.82796 -11.60184 -11.56856 -11.36378 -11.00134 -10.97167 -10.95607 -10.88560 -10.83655 -10.34907 -10.30202 -10.20213 -9.94469 -9.36507 -8.72215 -8.55256 -8.25741 -7.88214 -7.53930 -6.21390 -4.26107 2.30248 2.44227 2.47012 3.01524 3.25583 3.29441 3.33675 3.77610 3.98860 4.34551 4.48061 4.65942 4.76837 4.91078 5.13936 5.15354 5.16337 5.30184 5.45249 5.50596 5.69246 5.77414 5.78313 5.83853 5.85359 5.92106 5.95493 6.04876 6.15702 6.26277 6.27629 6.40634 6.55403 6.57618 6.66875 6.91628 7.03731 7.19665 7.26769 7.42957 7.51405 7.71088 7.82737 7.97660 8.02073 8.14350 8.41692 8.78573 9.30069 9.39550 10.86934 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.004550 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.600000 B = 6152.670705 C = 7811.012640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.158 4.158 4 C -0.087 4.087 5 H 0.114 0.886 6 C 0.133 3.867 7 N -0.724 5.724 8 C 0.530 3.470 9 O -0.569 6.569 10 C 0.051 3.949 11 H 0.087 0.913 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.073 3.927 15 N -0.881 5.881 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.007 4.007 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.132 4.132 25 C -0.118 4.118 26 C 0.471 3.529 27 O -0.484 6.484 28 O -0.515 6.515 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.266 0.734 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 10.554 -8.364 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.215 4.215 4 C -0.107 4.107 5 H 0.132 0.868 6 C 0.009 3.991 7 N -0.376 5.376 8 C 0.320 3.680 9 O -0.448 6.448 10 C 0.030 3.970 11 H 0.105 0.895 12 C -0.546 4.546 13 H 0.081 0.919 14 C -0.132 4.132 15 N -0.517 5.517 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.008 4.008 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.168 4.168 24 C -0.151 4.151 25 C -0.136 4.136 26 C 0.312 3.688 27 O -0.369 6.369 28 O -0.328 6.328 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -4.016 9.848 -8.751 13.773 hybrid contribution 2.063 0.215 0.601 2.160 sum -1.952 10.063 -8.150 13.096 Atomic orbital electron populations 1.21945 0.93857 1.02766 1.02285 1.21011 0.96795 0.96652 0.95806 1.22103 1.03103 0.94565 1.01705 1.21503 0.87655 0.99149 1.02378 0.86828 1.21167 0.99676 0.88719 0.89540 1.45791 1.58831 1.13830 1.19151 1.21589 0.76242 0.80334 0.89848 1.90572 1.41520 1.64375 1.48374 1.18107 0.97934 0.89428 0.91549 0.89479 1.20674 0.88466 1.51803 0.93656 0.91881 1.24955 0.98535 0.94043 0.95641 1.69918 1.35581 1.48129 0.98048 0.86552 0.85042 0.79057 0.76877 1.20015 1.21207 1.19980 1.20011 0.91372 0.97043 0.92380 1.20828 0.98796 0.92434 0.98217 1.20945 0.98556 0.96297 0.99498 1.20783 0.99426 0.98527 0.98060 1.20888 1.00709 0.94095 0.99371 1.20972 0.97512 0.95772 0.99383 1.23397 0.91530 0.81169 0.72728 1.90862 1.70069 1.32759 1.43233 1.84610 1.26340 1.36015 1.85851 0.92141 0.92132 0.91636 0.90477 0.90244 0.92701 0.92414 0.91356 0.90403 0.76336 0.92431 0.87164 0.87660 0.87778 0.87620 0.87067 0.73786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.85 37.16 0.33 -0.93 16 2 C -0.08 -0.77 2.50 -90.62 -0.23 -1.00 16 3 C -0.16 -1.29 8.68 37.16 0.32 -0.96 16 4 C -0.09 -1.02 1.96 -91.77 -0.18 -1.20 16 5 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 6 C 0.13 2.05 4.41 -4.04 -0.02 2.03 16 7 N -0.72 -13.83 4.71 -60.29 -0.28 -14.11 16 8 C 0.53 12.17 7.04 -10.99 -0.08 12.10 16 9 O -0.57 -14.16 15.42 5.55 0.09 -14.08 16 10 C 0.05 1.25 2.38 -94.07 -0.22 1.03 16 11 H 0.09 2.23 7.13 -51.93 -0.37 1.86 16 12 C -0.51 -13.28 7.47 -34.44 -0.26 -13.54 16 13 H 0.06 1.72 7.82 -52.48 -0.41 1.31 16 14 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 15 N -0.88 -23.77 12.84 55.43 0.71 -23.05 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.01 -0.17 4.30 -104.63 -0.45 -0.62 16 21 C -0.08 -1.99 8.30 -39.59 -0.33 -2.32 16 22 C -0.13 -2.78 10.05 -39.59 -0.40 -3.17 16 23 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 24 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 25 C -0.12 -2.66 9.67 -39.58 -0.38 -3.04 16 26 C 0.47 6.29 7.23 36.00 0.26 6.55 16 27 O -0.48 -8.70 16.05 -18.75 -0.30 -9.00 16 28 O -0.52 -5.10 10.34 -39.25 -0.41 -5.50 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.69 5.32 -51.93 -0.28 0.41 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 37 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 38 H 0.40 7.58 8.04 -40.82 -0.33 7.25 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.11 2.66 7.89 -52.48 -0.41 2.24 16 41 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.11 2.40 7.96 -52.49 -0.42 1.98 16 45 H 0.40 2.68 9.10 45.56 0.41 3.10 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -32.43 373.63 -7.91 -40.34 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.80 Total: 13.61 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.52 Total: -9.62 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.43 Total: -37.17 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.62 Total: -28.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.43 -7.91 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602978593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.888 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds