Wall clock time and date at job start Tue Mar 31 2020 12:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.52996 * 109.47215 * 239.99671 * 2 1 3 5 5 C 1.50708 * 109.47040 * 59.99977 * 4 2 1 6 6 H 1.08000 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99886 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00139 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46914 * 90.00155 * 9 7 5 11 11 H 1.48502 * 109.46604 * 210.00013 * 9 7 5 12 12 H 1.48497 * 109.46980 * 329.99939 * 9 7 5 13 13 C 1.52997 * 109.46752 * 119.99877 * 2 1 3 14 14 N 1.46499 * 109.47046 * 300.00012 * 13 2 1 15 15 C 1.39692 * 119.99992 * 180.02562 * 14 13 2 16 16 C 1.38965 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.38371 * 120.13315 * 179.97438 * 16 15 14 18 18 F 1.35102 * 119.92441 * 179.97438 * 17 16 15 19 19 C 1.38333 * 120.15292 * 359.97438 * 17 16 15 20 20 C 1.39286 * 120.00010 * 0.02562 * 19 17 16 21 21 C 1.48471 * 120.07324 * 180.02562 * 20 19 17 22 22 N 1.34041 * 126.67945 * 179.66550 * 21 20 19 23 23 N 1.28988 * 107.26997 * 179.83954 * 22 21 20 24 24 N 1.28731 * 108.93991 * 0.43723 * 23 22 21 25 25 H 0.97005 * 125.33341 * 179.69160 * 24 23 22 26 26 N 1.28867 * 109.32011 * 359.72017 * 24 23 22 27 27 C 1.38712 * 120.00430 * 179.97438 * 15 14 13 28 28 H 1.08998 * 109.47735 * 300.00447 * 1 2 3 29 29 H 1.09008 * 109.46924 * 60.00324 * 1 2 3 30 30 H 1.08996 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47107 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.46938 * 299.99667 * 3 2 1 33 33 H 1.08998 * 109.47617 * 59.99480 * 3 2 1 34 34 H 1.08995 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47565 * 300.00183 * 4 2 1 36 36 H 0.97000 * 120.00048 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46713 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47536 * 60.00066 * 13 2 1 39 39 H 0.97000 * 120.00068 * 359.97438 * 14 13 2 40 40 H 1.07989 * 119.93045 * 359.69721 * 16 15 14 41 41 H 1.07996 * 120.00726 * 180.02562 * 19 17 16 42 42 H 1.07994 * 120.07099 * 0.04380 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2491 0.3992 -5.2572 10 1 2.2274 1.4409 -5.6608 11 1 1.0845 -0.5798 -6.3616 12 1 -0.0591 1.0367 -4.9617 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8893 -0.5075 3.7142 16 6 2.6891 -1.6367 3.8417 17 6 3.0258 -2.1112 5.0972 18 9 3.8032 -3.2097 5.2163 19 6 2.5684 -1.4634 6.2306 20 6 1.7664 -0.3310 6.1096 21 6 1.2750 0.3659 7.3250 22 7 0.5059 1.4631 7.3630 23 7 0.3014 1.7446 8.6051 24 7 0.9144 0.8800 9.3358 25 1 0.9230 0.8706 10.3058 26 7 1.5151 0.0294 8.5767 27 6 1.4274 0.1467 4.8467 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2492 36 1 2.8617 -1.8825 -4.7336 37 1 3.1299 -0.7208 1.2495 38 1 1.6766 -1.7489 1.2493 39 1 0.9942 0.7583 2.3563 40 1 3.0448 -2.1476 2.9593 41 1 2.8330 -1.8355 7.2093 42 1 0.8059 1.0245 4.7490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603139678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:24 Heat of formation + Delta-G solvation = 89.162029 kcal Electronic energy + Delta-G solvation = -25599.527472 eV Core-core repulsion = 21724.454732 eV Total energy + Delta-G solvation = -3875.072740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.89480 -44.72999 -39.56131 -37.57657 -34.94336 -34.43867 -33.29023 -32.25446 -30.53251 -29.28473 -27.02547 -26.53163 -26.14713 -24.84192 -24.66491 -22.86950 -22.36835 -21.19978 -19.48287 -18.48351 -17.64700 -17.41380 -16.55814 -16.26494 -16.12147 -15.60763 -15.37858 -15.06469 -14.59688 -14.43459 -14.33277 -14.11944 -13.15314 -13.10600 -13.03442 -12.81481 -12.53112 -12.37687 -12.09223 -11.95416 -11.65080 -11.54728 -11.42927 -11.33396 -11.06685 -11.00355 -10.87087 -10.66631 -10.43292 -10.27916 -10.01916 -9.72407 -9.25172 -8.97418 -8.77441 -8.39221 -7.44771 -6.03595 -4.04675 0.48083 0.93856 1.30627 1.94017 2.17200 3.25628 3.29188 3.36445 3.38331 3.59624 3.64708 3.89442 4.39818 4.43996 4.81547 5.00948 5.06034 5.19226 5.22541 5.32194 5.33980 5.43679 5.53400 5.70273 5.80549 6.02949 6.04506 6.08619 6.12718 6.14214 6.22329 6.22803 6.33663 6.59401 6.60793 6.68231 7.00056 7.04141 7.06564 7.34775 7.58230 7.70402 7.79344 7.86646 7.94855 8.36970 8.99895 9.58809 11.07826 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.022182 B = 0.002450 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.979572 B =11423.586183 C =12489.204106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.126 3.874 14 N -0.727 5.727 15 C 0.253 3.747 16 C -0.218 4.218 17 C 0.148 3.852 18 F -0.137 7.137 19 C -0.187 4.187 20 C 0.053 3.947 21 C 0.225 3.775 22 N -0.263 5.263 23 N -0.051 5.051 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.290 5.290 27 C -0.169 4.169 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.404 0.596 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 2.716 24.551 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.003 3.997 14 N -0.354 5.354 15 C 0.145 3.855 16 C -0.243 4.243 17 C 0.128 3.872 18 F -0.115 7.115 19 C -0.211 4.211 20 C 0.048 3.952 21 C -0.055 4.055 22 N -0.136 5.136 23 N -0.046 5.046 24 N -0.075 5.075 25 H 0.329 0.671 26 N -0.142 5.142 27 C -0.194 4.194 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.241 0.759 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.088 2.942 24.542 24.806 hybrid contribution -0.067 0.114 -0.523 0.539 sum -2.155 3.055 24.020 24.309 Atomic orbital electron populations 1.21758 0.95178 1.01169 1.00362 1.20862 0.95550 0.95888 0.94760 1.21758 1.00486 0.95861 1.00359 1.19100 0.96294 0.95203 0.89572 1.21173 1.31201 1.12065 0.90489 0.92259 1.25010 0.95306 0.95067 0.99110 1.69956 1.36980 1.23003 1.23483 0.86646 0.79216 0.79425 0.83029 1.20760 1.21332 1.19931 1.21732 0.98446 0.95985 0.83530 1.45123 1.55771 1.32498 1.01990 1.17337 0.91187 0.91086 0.85894 1.20747 1.06198 1.00187 0.97137 1.17042 0.92300 0.84526 0.93341 1.91507 1.72269 1.50888 1.96851 1.20637 1.04009 0.98036 0.98398 1.16468 0.97687 0.93847 0.87152 1.23623 0.97439 0.93220 0.91241 1.76118 1.15337 1.13058 1.09074 1.78934 1.14365 1.14078 0.97219 1.47744 1.30953 1.16031 1.12750 0.67060 1.74955 1.19437 1.17073 1.02729 1.20551 1.06142 1.03239 0.89474 0.95077 0.91473 0.93385 0.93385 0.91476 0.95078 0.96379 0.96369 0.93026 0.92136 0.92132 0.75898 0.84085 0.84463 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.25 0.54 -154.51 -0.08 -1.33 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.22 7.65 -34.44 -0.26 -13.49 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.13 1.92 3.80 -4.04 -0.02 1.91 16 14 N -0.73 -9.40 5.13 -58.67 -0.30 -9.71 16 15 C 0.25 3.17 6.65 -83.83 -0.56 2.62 16 16 C -0.22 -2.78 9.28 -39.26 -0.36 -3.14 16 17 C 0.15 1.83 7.29 -39.50 -0.29 1.54 16 18 F -0.14 -1.76 17.26 2.25 0.04 -1.72 16 19 C -0.19 -2.14 9.67 -39.16 -0.38 -2.52 16 20 C 0.05 0.61 5.87 -104.93 -0.62 0.00 16 21 C 0.22 2.56 7.93 -156.30 -1.24 1.32 16 22 N -0.26 -3.12 12.23 32.16 0.39 -2.73 16 23 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 24 N -0.23 -1.57 7.90 60.35 0.48 -1.10 16 25 H 0.48 0.86 8.96 -340.36 -3.05 -2.19 16 26 N -0.29 -2.78 12.08 32.17 0.39 -2.40 16 27 C -0.17 -1.98 9.55 -39.04 -0.37 -2.35 16 28 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 29 H 0.07 1.25 6.62 -51.92 -0.34 0.90 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.24 6.62 -51.92 -0.34 0.90 16 33 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 38 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 39 H 0.40 4.87 6.17 -40.82 -0.25 4.62 16 40 H 0.14 1.80 6.71 -52.49 -0.35 1.45 16 41 H 0.14 1.41 7.88 -52.49 -0.41 0.99 16 42 H 0.14 1.51 7.88 -52.49 -0.41 1.10 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -30.06 353.05 -8.78 -38.84 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.83 Total: -0.62 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -3.79 Total: -17.00 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 2.51 Total: -40.72 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.06 -8.78 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.005 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds