Wall clock time and date at job start Tue Mar 31 2020 12:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.52996 * 109.47215 * 239.99671 * 2 1 3 5 5 C 1.50708 * 109.47040 * 59.99977 * 4 2 1 6 6 H 1.08000 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99886 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00139 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46914 * 90.00155 * 9 7 5 11 11 H 1.48502 * 109.46604 * 210.00013 * 9 7 5 12 12 H 1.48497 * 109.46980 * 329.99939 * 9 7 5 13 13 C 1.52997 * 109.46752 * 119.99877 * 2 1 3 14 14 N 1.46499 * 109.47046 * 300.00012 * 13 2 1 15 15 C 1.39692 * 119.99992 * 180.02562 * 14 13 2 16 16 C 1.38965 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.38371 * 120.13315 * 179.97438 * 16 15 14 18 18 F 1.35102 * 119.92441 * 179.97438 * 17 16 15 19 19 C 1.38333 * 120.15292 * 359.97438 * 17 16 15 20 20 C 1.39286 * 120.00010 * 0.02562 * 19 17 16 21 21 C 1.48471 * 120.07324 * 180.02562 * 20 19 17 22 22 N 1.34041 * 126.67945 * 179.66550 * 21 20 19 23 23 N 1.28988 * 107.26997 * 179.83954 * 22 21 20 24 24 N 1.28731 * 108.93991 * 0.43723 * 23 22 21 25 25 H 0.97005 * 125.33341 * 179.69160 * 24 23 22 26 26 N 1.28867 * 109.32011 * 359.72017 * 24 23 22 27 27 C 1.38712 * 120.00430 * 179.97438 * 15 14 13 28 28 H 1.08998 * 109.47735 * 300.00447 * 1 2 3 29 29 H 1.09008 * 109.46924 * 60.00324 * 1 2 3 30 30 H 1.08996 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47107 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.46938 * 299.99667 * 3 2 1 33 33 H 1.08998 * 109.47617 * 59.99480 * 3 2 1 34 34 H 1.08995 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47565 * 300.00183 * 4 2 1 36 36 H 0.97000 * 120.00048 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46713 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47536 * 60.00066 * 13 2 1 39 39 H 0.97000 * 120.00068 * 359.97438 * 14 13 2 40 40 H 1.07989 * 119.93045 * 359.69721 * 16 15 14 41 41 H 1.07996 * 120.00726 * 180.02562 * 19 17 16 42 42 H 1.07994 * 120.07099 * 0.04380 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2491 0.3992 -5.2572 10 1 2.2274 1.4409 -5.6608 11 1 1.0845 -0.5798 -6.3616 12 1 -0.0591 1.0367 -4.9617 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8893 -0.5075 3.7142 16 6 2.6891 -1.6367 3.8417 17 6 3.0258 -2.1112 5.0972 18 9 3.8032 -3.2097 5.2163 19 6 2.5684 -1.4634 6.2306 20 6 1.7664 -0.3310 6.1096 21 6 1.2750 0.3659 7.3250 22 7 0.5059 1.4631 7.3630 23 7 0.3014 1.7446 8.6051 24 7 0.9144 0.8800 9.3358 25 1 0.9230 0.8706 10.3058 26 7 1.5151 0.0294 8.5767 27 6 1.4274 0.1467 4.8467 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7217 -1.2489 35 1 1.6767 -1.7490 -1.2492 36 1 2.8617 -1.8825 -4.7336 37 1 3.1299 -0.7208 1.2495 38 1 1.6766 -1.7489 1.2493 39 1 0.9942 0.7583 2.3563 40 1 3.0448 -2.1476 2.9593 41 1 2.8330 -1.8355 7.2093 42 1 0.8059 1.0245 4.7490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603139678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:23 Heat of formation + Delta-G solvation = 71.224566 kcal Electronic energy + Delta-G solvation = -25600.305299 eV Core-core repulsion = 21724.454732 eV Total energy + Delta-G solvation = -3875.850567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.88323 -45.47413 -40.58122 -38.90153 -36.05228 -35.29420 -34.50454 -33.83990 -31.44006 -30.43993 -28.81176 -27.92308 -27.34667 -25.75160 -25.57453 -24.54939 -23.29972 -22.19198 -20.23839 -19.80768 -18.75470 -18.33565 -18.14720 -17.42211 -17.09629 -16.64954 -16.59797 -16.26988 -16.05290 -15.73065 -15.41509 -15.00182 -14.63904 -14.42422 -14.38249 -13.91493 -13.88464 -13.58411 -13.36747 -12.91174 -12.87544 -12.71627 -12.65034 -12.49216 -12.39308 -12.29801 -12.17032 -12.13481 -12.04508 -11.92745 -11.47803 -10.95291 -10.81781 -10.80376 -10.48764 -9.70071 -8.45963 -8.12632 -6.19020 -0.37478 0.16893 0.36261 1.29465 1.40743 1.42834 1.43576 1.53283 2.31209 2.46108 2.66803 2.70817 3.06441 3.22210 3.48099 3.91150 4.01055 4.10086 4.14693 4.16210 4.26878 4.30893 4.40353 4.48595 4.71867 4.78443 4.79457 4.90865 5.01664 5.07918 5.16084 5.16353 5.21873 5.31549 5.47281 5.54140 5.56237 5.58680 5.61759 5.70743 5.84662 5.93020 6.23503 6.37245 6.80886 6.96193 7.10906 7.48325 8.99457 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.022182 B = 0.002450 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.979572 B =11423.586183 C =12489.204106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.068 0.932 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.262 1.262 13 C 0.141 3.859 14 N -0.723 5.723 15 C 0.248 3.752 16 C -0.227 4.227 17 C 0.140 3.860 18 F -0.142 7.142 19 C -0.178 4.178 20 C 0.052 3.948 21 C 0.211 3.789 22 N -0.286 5.286 23 N -0.055 5.055 24 N -0.198 5.198 25 H 0.495 0.505 26 N -0.288 5.288 27 C -0.161 4.161 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.065 0.935 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.259 0.741 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.411 0.589 40 H 0.135 0.865 41 H 0.150 0.850 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 4.193 26.605 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.187 1.187 13 C 0.017 3.983 14 N -0.351 5.351 15 C 0.141 3.859 16 C -0.252 4.252 17 C 0.120 3.880 18 F -0.120 7.120 19 C -0.201 4.201 20 C 0.047 3.953 21 C -0.069 4.069 22 N -0.159 5.159 23 N -0.050 5.050 24 N -0.049 5.049 25 H 0.355 0.645 26 N -0.141 5.141 27 C -0.186 4.186 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.008 0.992 35 H 0.009 0.991 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.249 0.751 40 H 0.153 0.847 41 H 0.168 0.832 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.150 4.444 26.643 27.195 hybrid contribution 0.272 -0.365 -0.972 1.073 sum -2.879 4.079 25.672 26.152 Atomic orbital electron populations 1.21686 0.94106 1.00934 1.01191 1.20658 0.96297 0.96113 0.93303 1.21688 0.99979 0.95053 1.01213 1.18978 0.94460 0.94280 0.92064 1.21597 1.30243 1.11925 0.91296 0.91407 1.25880 0.95785 0.95882 1.02494 1.70097 1.38801 1.24827 1.24002 0.85617 0.79099 0.78195 0.79169 1.20270 1.21554 1.18664 1.21348 0.97997 0.95520 0.83449 1.44822 1.56282 1.32702 1.01328 1.17318 0.91544 0.91214 0.85809 1.20790 1.06607 1.00546 0.97243 1.17109 0.92676 0.84666 0.93552 1.91494 1.72473 1.51183 1.96869 1.20745 1.03208 0.97603 0.98586 1.16535 0.97461 0.93790 0.87476 1.23555 0.98189 0.93584 0.91589 1.76097 1.16113 1.13577 1.10075 1.78882 1.14707 1.14488 0.96943 1.47808 1.28986 1.14492 1.13652 0.64536 1.74918 1.19425 1.17371 1.02384 1.20622 1.05656 1.03198 0.89138 0.91583 0.93201 0.94187 0.94190 0.93155 0.91587 0.99152 0.99139 0.93217 0.92726 0.92719 0.75101 0.84701 0.83218 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.24 0.54 -52.18 -0.03 -2.26 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.41 16 4 C 0.04 1.92 4.04 29.85 0.12 2.04 16 5 C -0.51 -26.90 7.65 25.60 0.20 -26.70 16 6 H 0.07 3.38 5.68 -2.91 -0.02 3.37 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -55.70 13.29 21.45 0.28 -55.41 16 9 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 13 C 0.14 4.26 3.80 86.38 0.33 4.58 16 14 N -0.72 -17.49 5.13 -339.53 -1.74 -19.24 16 15 C 0.25 5.87 6.65 38.18 0.25 6.12 16 16 C -0.23 -5.66 9.28 22.48 0.21 -5.46 16 17 C 0.14 3.34 7.29 22.32 0.16 3.50 16 18 F -0.14 -3.56 17.26 44.97 0.78 -2.78 16 19 C -0.18 -3.79 9.67 22.54 0.22 -3.57 16 20 C 0.05 1.11 5.87 -20.06 -0.12 0.99 16 21 C 0.21 4.36 7.93 137.38 1.09 5.45 16 22 N -0.29 -6.21 12.23 -52.18 -0.64 -6.85 16 23 N -0.06 -0.95 13.47 37.02 0.50 -0.45 16 24 N -0.20 -2.20 7.90 37.02 0.29 -1.90 16 25 H 0.50 0.32 8.96 -347.53 -3.12 -2.80 16 26 N -0.29 -4.81 12.08 -52.12 -0.63 -5.44 16 27 C -0.16 -3.47 9.55 22.62 0.22 -3.25 16 28 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 29 H 0.05 1.79 6.62 -2.38 -0.02 1.78 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.80 6.62 -2.38 -0.02 1.79 16 33 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 38 H 0.05 1.71 7.94 -2.39 -0.02 1.69 16 39 H 0.41 8.77 6.17 -92.71 -0.57 8.19 16 40 H 0.14 3.49 6.71 -2.92 -0.02 3.47 16 41 H 0.15 2.76 7.88 -2.91 -0.02 2.74 16 42 H 0.15 2.89 7.88 -2.91 -0.02 2.87 16 Total: -1.00 -65.40 353.05 2.54 -62.86 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.60 Total: 9.03 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.27 Total: -25.10 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -1.94 Total: -89.29 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.40 2.54 -62.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.089 kcal (2) G-P(sol) polarization free energy of solvation -65.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds