Wall clock time and date at job start Tue Mar 31 2020 13:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 C 1.53005 * 109.47114 * 119.99774 * 2 1 3 5 5 N 1.46497 * 109.47278 * 174.11227 * 4 2 1 6 6 C 1.46497 * 120.00056 * 276.68572 * 5 4 2 7 7 C 1.50700 * 109.47257 * 270.00227 * 6 5 4 8 8 H 1.08002 * 119.99811 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00098 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99674 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99965 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47239 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47162 * 119.99804 * 11 9 7 14 14 H 1.48504 * 109.47222 * 240.00086 * 11 9 7 15 15 C 1.34775 * 120.00080 * 96.68396 * 5 4 2 16 16 O 1.21283 * 119.99970 * 185.40486 * 15 5 4 17 17 C 1.50709 * 119.99930 * 5.40768 * 15 5 4 18 18 C 1.50695 * 109.46851 * 174.69126 * 17 15 5 19 19 C 1.38372 * 119.84961 * 269.72378 * 18 17 15 20 20 C 1.37951 * 120.15271 * 179.72364 * 19 18 17 21 21 C 1.39626 * 119.84308 * 0.57420 * 20 19 18 22 22 C 1.47725 * 120.14633 * 179.67762 * 21 20 19 23 23 O 1.21468 * 120.00054 * 180.02562 * 22 21 20 24 24 O 1.34712 * 119.99970 * 0.02562 * 22 21 20 25 25 C 1.39626 * 119.70254 * 359.70383 * 21 20 19 26 26 C 1.37942 * 119.84956 * 359.97438 * 25 21 20 27 27 H 1.09001 * 109.47524 * 300.00062 * 1 2 3 28 28 H 1.08998 * 109.47413 * 60.00375 * 1 2 3 29 29 H 1.09005 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47320 * 239.99555 * 2 1 3 31 31 H 1.08998 * 109.46943 * 184.70492 * 3 2 1 32 32 H 1.08993 * 109.47077 * 304.70430 * 3 2 1 33 33 H 1.09000 * 109.47642 * 64.70738 * 3 2 1 34 34 H 1.09003 * 109.47177 * 54.10651 * 4 2 1 35 35 H 1.09006 * 109.46833 * 294.11125 * 4 2 1 36 36 H 1.09005 * 109.47032 * 29.99743 * 6 5 4 37 37 H 1.09000 * 109.46981 * 149.99628 * 6 5 4 38 38 H 0.97003 * 119.99627 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.46722 * 54.69253 * 17 15 5 40 40 H 1.08996 * 109.46881 * 294.69070 * 17 15 5 41 41 H 1.07999 * 119.92186 * 359.97438 * 19 18 17 42 42 H 1.08000 * 120.07212 * 180.27357 * 20 19 18 43 43 H 0.96705 * 116.99646 * 179.97438 * 24 22 21 44 44 H 1.08000 * 120.07725 * 179.97438 * 25 21 20 45 45 H 1.08001 * 119.92625 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4981 -0.8452 1.1806 6 6 4.1050 -1.9448 0.4265 7 6 4.2994 -3.1305 1.3361 8 1 4.0011 -3.0708 2.3724 9 6 4.8581 -4.2916 0.8453 10 7 5.2209 -4.3644 -0.4167 11 14 5.0997 -5.7610 1.9729 12 1 4.6126 -5.4252 3.3350 13 1 4.3352 -6.9201 1.4463 14 1 6.5428 -6.1063 2.0339 15 6 4.2811 0.0524 1.8111 16 8 5.4854 0.0084 1.6744 17 6 3.6603 1.1109 2.6861 18 6 4.7478 1.8975 3.3713 19 6 5.2201 1.4885 4.6059 20 6 6.2194 2.2007 5.2362 21 6 6.7460 3.3434 4.6308 22 6 7.8113 4.1151 5.3030 23 8 8.2671 5.1091 4.7742 24 8 8.2772 3.7164 6.5025 25 6 6.2607 3.7537 3.3876 26 6 5.2659 3.0285 2.7654 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1266 1.4437 -0.0843 32 1 1.6094 1.9800 -0.8448 33 1 1.7471 1.9315 0.9291 34 1 1.5930 -1.7139 1.3037 35 1 1.7652 -0.1500 2.1362 36 1 3.4505 -2.2238 -0.3992 37 1 5.0704 -1.6262 0.0333 38 1 5.6137 -5.1813 -0.7620 39 1 3.0272 0.6368 3.4360 40 1 3.0579 1.7814 2.0733 41 1 4.8082 0.6074 5.0754 42 1 6.5901 1.8777 6.1978 43 1 8.9747 4.2533 6.9030 44 1 6.6634 4.6369 2.9140 45 1 4.8899 3.3445 1.8036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603810350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:23 Heat of formation + Delta-G solvation = -115.113383 kcal Electronic energy + Delta-G solvation = -26730.254065 eV Core-core repulsion = 22905.198081 eV Total energy + Delta-G solvation = -3825.055984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53416 -39.65441 -38.42687 -36.33291 -36.21461 -33.80191 -32.87658 -32.27318 -31.04841 -28.91594 -27.24145 -26.98063 -25.53353 -24.01857 -22.81769 -22.43687 -20.88880 -20.26185 -18.36545 -18.25433 -17.51110 -16.63647 -16.48623 -15.78950 -15.73318 -15.48462 -14.97469 -14.69500 -14.54380 -14.40171 -14.04006 -13.57446 -13.43031 -13.22868 -13.14810 -12.68244 -12.50549 -12.27110 -12.15856 -11.79006 -11.73710 -11.66937 -11.54871 -11.25907 -11.09240 -10.94098 -10.88739 -10.77258 -10.72308 -10.56699 -10.42033 -10.15443 -9.62253 -9.16875 -9.00366 -8.69490 -8.45891 -7.66330 -6.06715 -4.11620 0.63217 1.37498 2.44948 2.88524 3.27581 3.33152 3.36404 3.40320 3.66078 4.01186 4.42657 4.66200 4.74198 4.91320 4.98708 5.01513 5.06471 5.09579 5.27418 5.27558 5.33017 5.39720 5.55054 5.55732 5.62647 5.68045 5.77207 5.83852 5.92529 5.98240 6.02835 6.13795 6.17040 6.23077 6.27944 6.33063 6.40578 6.51817 6.54232 6.81182 7.04918 7.43851 7.52268 7.74186 7.89896 8.21161 8.38860 8.87367 9.05730 9.53762 11.01289 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.003672 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.061903 B = 7622.913099 C = 9523.642480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.150 4.150 4 C 0.114 3.886 5 N -0.595 5.595 6 C 0.247 3.753 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.511 3.489 16 O -0.535 6.535 17 C -0.124 4.124 18 C -0.012 4.012 19 C -0.122 4.122 20 C -0.057 4.057 21 C -0.141 4.141 22 C 0.531 3.469 23 O -0.520 6.520 24 O -0.513 6.513 25 C -0.051 4.051 26 C -0.118 4.118 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.412 0.588 44 H 0.135 0.865 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 15.072 8.767 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.207 4.207 4 C -0.010 4.010 5 N -0.326 5.326 6 C 0.128 3.872 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.297 3.703 16 O -0.412 6.412 17 C -0.164 4.164 18 C -0.012 4.012 19 C -0.140 4.140 20 C -0.075 4.075 21 C -0.142 4.142 22 C 0.376 3.624 23 O -0.410 6.410 24 O -0.324 6.324 25 C -0.069 4.069 26 C -0.136 4.136 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.270 0.730 44 H 0.153 0.847 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.928 14.920 8.226 18.039 hybrid contribution 0.608 -0.686 0.755 1.188 sum -5.320 14.235 8.981 17.652 Atomic orbital electron populations 1.21762 0.95003 1.01883 1.01389 1.21561 0.95428 0.96448 1.00213 1.21983 1.01511 0.96104 1.01076 1.21569 0.81757 1.01166 0.96548 1.48178 1.05223 1.27975 1.51257 1.19257 0.94495 0.82490 0.90984 1.21469 1.41137 0.97264 0.96719 0.92448 1.24930 0.95232 0.98746 0.95153 1.69943 1.42043 1.27786 1.13463 0.86466 0.77969 0.82316 0.80799 1.19812 1.20968 1.20885 1.19994 0.87269 0.82101 0.80891 1.90706 1.14371 1.73169 1.62939 1.21160 0.97340 0.97882 0.99986 1.19749 0.94849 0.93284 0.93339 1.21052 0.97625 0.99945 0.95363 1.21370 0.94154 0.92563 0.99442 1.18952 0.99451 0.98701 0.97139 1.20979 0.80766 0.82180 0.78489 1.90868 1.58278 1.26516 1.65357 1.84578 1.55348 1.58067 1.34423 1.21157 0.94359 0.98944 0.92474 1.20934 0.97361 0.95392 0.99934 0.92867 0.92826 0.92425 0.90371 0.92464 0.92845 0.92772 0.90149 0.91458 0.95053 0.93832 0.92771 0.88217 0.87500 0.85100 0.84578 0.72968 0.84672 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 37.16 0.34 -1.10 16 2 C -0.12 -1.50 3.11 -90.62 -0.28 -1.78 16 3 C -0.15 -1.72 7.59 37.16 0.28 -1.44 16 4 C 0.11 1.70 4.89 -4.04 -0.02 1.68 16 5 N -0.60 -11.77 2.26 -175.05 -0.40 -12.17 16 6 C 0.25 6.24 5.22 -5.20 -0.03 6.22 16 7 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 11 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.51 9.93 6.44 -10.98 -0.07 9.86 16 16 O -0.53 -12.98 15.60 5.56 0.09 -12.90 16 17 C -0.12 -1.68 4.18 -29.03 -0.12 -1.80 16 18 C -0.01 -0.16 4.39 -104.53 -0.46 -0.62 16 19 C -0.12 -1.62 9.68 -39.64 -0.38 -2.01 16 20 C -0.06 -0.71 9.62 -39.17 -0.38 -1.09 16 21 C -0.14 -1.86 5.87 -104.99 -0.62 -2.48 16 22 C 0.53 6.68 8.27 34.61 0.29 6.97 16 23 O -0.52 -7.76 17.13 -19.24 -0.33 -8.09 16 24 O -0.51 -4.78 12.68 -40.52 -0.51 -5.29 16 25 C -0.05 -0.67 9.60 -39.17 -0.38 -1.04 16 26 C -0.12 -1.55 9.68 -39.64 -0.38 -1.94 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 31 H 0.06 0.78 6.87 -51.93 -0.36 0.43 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.52 6.49 -51.93 -0.34 0.18 16 34 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 35 H 0.07 0.80 6.10 -51.93 -0.32 0.49 16 36 H 0.03 0.81 7.94 -51.93 -0.41 0.39 16 37 H 0.04 1.26 7.35 -51.93 -0.38 0.88 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.10 1.15 7.30 -51.93 -0.38 0.77 16 40 H 0.11 1.19 4.74 -51.93 -0.25 0.94 16 41 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.14 1.44 7.61 -52.49 -0.40 1.04 16 43 H 0.41 1.88 9.11 45.56 0.42 2.29 16 44 H 0.14 1.62 7.65 -52.49 -0.40 1.22 16 45 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -35.23 376.49 -8.12 -43.35 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.73 Total: 2.25 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.63 Total: -3.85 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.34 Total: -37.69 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.76 Total: -26.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.23 -8.12 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603810350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.762 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds