Wall clock time and date at job start Tue Mar 31 2020 12:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47555 * 2 1 4 4 C 1.52998 * 109.47109 * 300.00013 * 3 2 1 5 5 N 1.46499 * 109.47535 * 179.97438 * 3 2 1 6 6 C 1.34777 * 120.00345 * 180.02562 * 5 3 2 7 7 O 1.21284 * 119.99721 * 0.27469 * 6 5 3 8 8 C 1.50701 * 120.00227 * 179.97438 * 6 5 3 9 9 C 1.52996 * 109.47064 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47056 * 55.00268 * 9 8 6 11 11 C 1.50699 * 109.47078 * 295.00065 * 9 8 6 12 12 H 1.07995 * 120.00495 * 325.84479 * 11 9 8 13 13 C 1.37875 * 119.99736 * 145.84394 * 11 9 8 14 14 N 1.31510 * 120.00157 * 6.11650 * 13 11 9 15 15 Si 1.86810 * 119.99991 * 186.11459 * 13 11 9 16 16 H 1.48504 * 109.46634 * 90.00035 * 15 13 11 17 17 H 1.48497 * 109.47168 * 209.99908 * 15 13 11 18 18 H 1.48493 * 109.46929 * 330.00134 * 15 13 11 19 19 C 1.50701 * 109.47030 * 175.00201 * 9 8 6 20 20 C 1.38240 * 120.00055 * 63.45765 * 19 9 8 21 21 C 1.38233 * 119.99859 * 179.79009 * 20 19 9 22 22 C 1.38238 * 120.00054 * 0.43917 * 21 20 19 23 23 C 1.38240 * 119.99870 * 359.81806 * 22 21 20 24 24 C 1.38232 * 119.99857 * 243.73417 * 19 9 8 25 25 C 1.50707 * 109.46702 * 59.99878 * 3 2 1 26 26 O 1.20823 * 119.99894 * 264.99783 * 25 3 2 27 27 O 1.34223 * 120.00029 * 85.00580 * 25 3 2 28 28 H 1.08998 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47225 * 299.99839 * 1 2 3 30 30 H 1.09007 * 109.47333 * 59.99583 * 1 2 3 31 31 H 1.08996 * 109.47393 * 239.99893 * 2 1 3 32 32 H 1.09007 * 109.47333 * 120.00416 * 2 1 3 33 33 H 1.08992 * 109.47134 * 299.99984 * 4 3 2 34 34 H 1.09004 * 109.46747 * 59.99835 * 4 3 2 35 35 H 1.08998 * 109.46788 * 179.97438 * 4 3 2 36 36 H 0.97003 * 119.99719 * 359.97438 * 5 3 2 37 37 H 1.09004 * 109.47064 * 300.00226 * 8 6 5 38 38 H 1.09005 * 109.46558 * 59.99566 * 8 6 5 39 39 H 0.97005 * 120.00256 * 180.02562 * 14 13 11 40 40 H 1.07994 * 119.99650 * 0.02562 * 20 19 9 41 41 H 1.08002 * 120.00068 * 180.27605 * 21 20 19 42 42 H 1.07997 * 120.00240 * 179.83410 * 22 21 20 43 43 H 1.07997 * 119.99646 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.00466 * 359.97438 * 24 19 9 45 45 H 0.96701 * 117.00302 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 7 3.5050 1.4424 0.0006 6 6 4.1790 2.6096 0.0012 7 8 3.5726 3.6600 0.0063 8 6 5.6860 2.6096 0.0025 9 6 6.1960 4.0520 0.0023 10 1 5.7607 4.5913 0.8436 11 6 5.7983 4.7253 -1.2859 12 1 5.7588 4.1562 -2.2029 13 6 5.4849 6.0679 -1.2938 14 7 5.6481 6.7877 -0.2054 15 14 4.8285 6.8647 -2.8508 16 1 3.3463 6.7727 -2.8667 17 1 5.2363 8.2921 -2.8862 18 1 5.3808 6.1625 -4.0369 19 6 7.6978 4.0538 0.1273 20 6 8.4748 3.4884 -0.8664 21 6 9.8525 3.4939 -0.7538 22 6 10.4530 4.0568 0.3569 23 6 9.6757 4.6175 1.3532 24 6 8.2982 4.6158 1.2385 25 6 1.5376 2.1528 1.2305 26 8 0.5282 2.8146 1.1762 27 8 2.2117 2.0505 2.3867 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 1.6499 -2.1391 34 1 0.4400 2.1638 -1.2492 35 1 1.8931 3.1915 -1.2489 36 1 3.9900 0.6024 0.0013 37 1 6.0486 2.0956 0.8927 38 1 6.0499 2.0957 -0.8873 39 1 5.4273 7.7323 -0.2108 40 1 8.0055 3.0458 -1.7326 41 1 10.4597 3.0562 -1.5323 42 1 11.5292 4.0587 0.4462 43 1 10.1449 5.0575 2.2207 44 1 7.6910 5.0539 2.0168 45 1 1.8509 2.5242 3.1487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604909138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:55 Heat of formation + Delta-G solvation = -111.122191 kcal Electronic energy + Delta-G solvation = -27784.940780 eV Core-core repulsion = 23960.057867 eV Total energy + Delta-G solvation = -3824.882913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72067 -38.90311 -38.17712 -36.40075 -35.69405 -33.94863 -32.53702 -31.41998 -29.99834 -29.49315 -28.33036 -25.92967 -25.05981 -23.50514 -22.74109 -21.62031 -20.37894 -19.66845 -19.19206 -17.88466 -16.95435 -16.68845 -16.35484 -15.87705 -15.34797 -15.14289 -14.50243 -14.36110 -14.11266 -13.98510 -13.86802 -13.32813 -13.13287 -12.79410 -12.56973 -12.41833 -12.24283 -12.08374 -11.92731 -11.81362 -11.63684 -11.60541 -11.47716 -11.24593 -10.95373 -10.85606 -10.70660 -10.56035 -10.30480 -10.24908 -10.05265 -9.43719 -9.05729 -8.88169 -8.73780 -8.32394 -8.03318 -7.59546 -5.92473 -3.92141 2.30028 2.35096 2.40403 3.10027 3.39534 3.45030 3.46718 3.47567 3.58513 4.51241 4.53044 4.72860 4.76349 5.00897 5.19245 5.36761 5.39366 5.46970 5.66361 5.67506 5.72454 5.74129 5.79228 5.85163 5.88408 5.95725 6.06989 6.09553 6.19047 6.29527 6.42419 6.54357 6.54421 6.71157 6.75240 6.81405 6.91969 7.05605 7.32221 7.45584 7.53725 7.86367 7.96162 7.98059 8.07400 8.12188 8.39141 9.00519 9.08198 9.70184 11.17657 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.004486 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.040770 B = 6240.007976 C = 7332.193699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C 0.195 3.805 4 C -0.159 4.159 5 N -0.737 5.737 6 C 0.517 3.483 7 O -0.487 6.487 8 C -0.120 4.120 9 C 0.080 3.920 10 H 0.072 0.928 11 C -0.493 4.493 12 H 0.050 0.950 13 C 0.080 3.920 14 N -0.880 5.880 15 Si 0.884 3.116 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.020 4.020 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.119 4.119 25 C 0.488 3.512 26 O -0.512 6.512 27 O -0.510 6.510 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.398 0.602 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.259 0.741 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -15.282 2.505 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.161 4.161 3 C 0.106 3.894 4 C -0.217 4.217 5 N -0.395 5.395 6 C 0.304 3.696 7 O -0.357 6.357 8 C -0.160 4.160 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.530 4.530 12 H 0.069 0.931 13 C -0.124 4.124 14 N -0.517 5.517 15 Si 0.713 3.287 16 H -0.206 1.206 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.021 4.021 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.137 4.137 25 C 0.328 3.672 26 O -0.399 6.399 27 O -0.320 6.320 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.131 0.869 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.247 -14.279 2.226 14.812 hybrid contribution -0.262 0.628 -0.380 0.779 sum -3.509 -13.651 1.846 14.215 Atomic orbital electron populations 1.21874 0.94154 1.02201 1.03239 1.21781 0.97435 0.92836 1.04031 1.20058 0.82838 0.95848 0.90622 1.22214 1.01794 1.03528 0.94138 1.46323 1.03954 1.09914 1.79325 1.21004 0.90985 0.82626 0.75001 1.90765 1.69470 1.30598 1.44898 1.21791 0.90134 1.02632 1.01477 1.17828 0.86207 0.89079 1.00744 0.91031 1.20667 1.45437 0.94116 0.92798 0.93135 1.24799 0.94514 0.97423 0.95643 1.69907 1.47319 1.07061 1.27428 0.86728 0.79619 0.78484 0.83907 1.20617 1.21521 1.20113 1.20726 0.98648 0.91569 0.91144 1.20940 0.92766 1.00779 0.98854 1.20972 0.95126 1.01250 0.97650 1.20794 0.98433 1.02468 0.95713 1.20984 0.94351 1.00635 0.98657 1.21086 0.93875 1.00178 0.98543 1.23722 0.80966 0.78020 0.84450 1.90676 1.25880 1.38248 1.85118 1.84541 1.56521 1.70110 1.20859 0.91855 0.92416 0.91389 0.89416 0.90451 0.91184 0.90840 0.89091 0.76711 0.91430 0.90407 0.93150 0.86915 0.87695 0.87835 0.87671 0.86883 0.73795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.25 37.15 0.34 -1.12 16 2 C -0.12 -1.17 5.09 -26.74 -0.14 -1.30 16 3 C 0.19 2.71 0.80 -132.97 -0.11 2.60 16 4 C -0.16 -2.42 7.58 37.16 0.28 -2.14 16 5 N -0.74 -10.44 4.87 -48.68 -0.24 -10.68 16 6 C 0.52 9.88 6.90 -10.98 -0.08 9.81 16 7 O -0.49 -11.76 12.20 5.55 0.07 -11.69 16 8 C -0.12 -2.24 4.95 -27.88 -0.14 -2.38 16 9 C 0.08 1.89 1.67 -92.93 -0.16 1.73 16 10 H 0.07 1.95 6.97 -51.93 -0.36 1.59 16 11 C -0.49 -13.04 6.38 -34.44 -0.22 -13.26 16 12 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 13 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 14 N -0.88 -25.93 12.87 55.43 0.71 -25.22 16 15 Si 0.88 22.33 29.54 -169.99 -5.02 17.31 16 16 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 20 C -0.12 -2.29 8.86 -39.58 -0.35 -2.64 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 22 C -0.16 -2.70 10.05 -39.58 -0.40 -3.09 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 24 C -0.12 -2.49 9.67 -39.58 -0.38 -2.88 16 25 C 0.49 7.93 4.79 36.01 0.17 8.10 16 26 O -0.51 -9.63 16.22 -18.75 -0.30 -9.94 16 27 O -0.51 -7.30 13.02 -39.24 -0.51 -7.81 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.63 6.83 -51.93 -0.35 0.28 16 30 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.03 6.16 -51.93 -0.32 0.71 16 35 H 0.09 1.81 6.18 -51.93 -0.32 1.49 16 36 H 0.40 4.19 8.47 -40.82 -0.35 3.85 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.32 7.78 -51.93 -0.40 0.91 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.11 2.15 7.76 -52.49 -0.41 1.74 16 41 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.11 2.41 7.95 -52.49 -0.42 1.99 16 45 H 0.40 4.28 9.10 45.56 0.41 4.70 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -34.63 371.00 -8.04 -42.67 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.78 Total: 10.63 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.56 Total: -10.86 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.48 Total: -35.90 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.75 Total: -29.44 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.63 -8.04 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604909138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.453 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds