Wall clock time and date at job start Tue Mar 31 2020 12:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47555 * 2 1 4 4 C 1.52998 * 109.47109 * 300.00013 * 3 2 1 5 5 N 1.46499 * 109.47535 * 179.97438 * 3 2 1 6 6 C 1.34777 * 120.00345 * 180.02562 * 5 3 2 7 7 O 1.21284 * 119.99721 * 0.27469 * 6 5 3 8 8 C 1.50701 * 120.00227 * 179.97438 * 6 5 3 9 9 C 1.52996 * 109.47064 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47056 * 55.00268 * 9 8 6 11 11 C 1.50699 * 109.47078 * 295.00065 * 9 8 6 12 12 H 1.07995 * 120.00495 * 325.84479 * 11 9 8 13 13 C 1.37875 * 119.99736 * 145.84394 * 11 9 8 14 14 N 1.31510 * 120.00157 * 6.11650 * 13 11 9 15 15 Si 1.86810 * 119.99991 * 186.11459 * 13 11 9 16 16 H 1.48504 * 109.46634 * 90.00035 * 15 13 11 17 17 H 1.48497 * 109.47168 * 209.99908 * 15 13 11 18 18 H 1.48493 * 109.46929 * 330.00134 * 15 13 11 19 19 C 1.50701 * 109.47030 * 175.00201 * 9 8 6 20 20 C 1.38240 * 120.00055 * 63.45765 * 19 9 8 21 21 C 1.38233 * 119.99859 * 179.79009 * 20 19 9 22 22 C 1.38238 * 120.00054 * 0.43917 * 21 20 19 23 23 C 1.38240 * 119.99870 * 359.81806 * 22 21 20 24 24 C 1.38232 * 119.99857 * 243.73417 * 19 9 8 25 25 C 1.50707 * 109.46702 * 59.99878 * 3 2 1 26 26 O 1.20823 * 119.99894 * 264.99783 * 25 3 2 27 27 O 1.34223 * 120.00029 * 85.00580 * 25 3 2 28 28 H 1.08998 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47225 * 299.99839 * 1 2 3 30 30 H 1.09007 * 109.47333 * 59.99583 * 1 2 3 31 31 H 1.08996 * 109.47393 * 239.99893 * 2 1 3 32 32 H 1.09007 * 109.47333 * 120.00416 * 2 1 3 33 33 H 1.08992 * 109.47134 * 299.99984 * 4 3 2 34 34 H 1.09004 * 109.46747 * 59.99835 * 4 3 2 35 35 H 1.08998 * 109.46788 * 179.97438 * 4 3 2 36 36 H 0.97003 * 119.99719 * 359.97438 * 5 3 2 37 37 H 1.09004 * 109.47064 * 300.00226 * 8 6 5 38 38 H 1.09005 * 109.46558 * 59.99566 * 8 6 5 39 39 H 0.97005 * 120.00256 * 180.02562 * 14 13 11 40 40 H 1.07994 * 119.99650 * 0.02562 * 20 19 9 41 41 H 1.08002 * 120.00068 * 180.27605 * 21 20 19 42 42 H 1.07997 * 120.00240 * 179.83410 * 22 21 20 43 43 H 1.07997 * 119.99646 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.00466 * 359.97438 * 24 19 9 45 45 H 0.96701 * 117.00302 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 7 3.5050 1.4424 0.0006 6 6 4.1790 2.6096 0.0012 7 8 3.5726 3.6600 0.0063 8 6 5.6860 2.6096 0.0025 9 6 6.1960 4.0520 0.0023 10 1 5.7607 4.5913 0.8436 11 6 5.7983 4.7253 -1.2859 12 1 5.7588 4.1562 -2.2029 13 6 5.4849 6.0679 -1.2938 14 7 5.6481 6.7877 -0.2054 15 14 4.8285 6.8647 -2.8508 16 1 3.3463 6.7727 -2.8667 17 1 5.2363 8.2921 -2.8862 18 1 5.3808 6.1625 -4.0369 19 6 7.6978 4.0538 0.1273 20 6 8.4748 3.4884 -0.8664 21 6 9.8525 3.4939 -0.7538 22 6 10.4530 4.0568 0.3569 23 6 9.6757 4.6175 1.3532 24 6 8.2982 4.6158 1.2385 25 6 1.5376 2.1528 1.2305 26 8 0.5282 2.8146 1.1762 27 8 2.2117 2.0505 2.3867 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 1.6499 -2.1391 34 1 0.4400 2.1638 -1.2492 35 1 1.8931 3.1915 -1.2489 36 1 3.9900 0.6024 0.0013 37 1 6.0486 2.0956 0.8927 38 1 6.0499 2.0957 -0.8873 39 1 5.4273 7.7323 -0.2108 40 1 8.0055 3.0458 -1.7326 41 1 10.4597 3.0562 -1.5323 42 1 11.5292 4.0587 0.4462 43 1 10.1449 5.0575 2.2207 44 1 7.6910 5.0539 2.0168 45 1 1.8509 2.5242 3.1487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604909138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:54 Heat of formation + Delta-G solvation = -134.543328 kcal Electronic energy + Delta-G solvation = -27785.956397 eV Core-core repulsion = 23960.057867 eV Total energy + Delta-G solvation = -3825.898530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98841 -40.39799 -39.64858 -37.59965 -37.00225 -35.71526 -33.81285 -33.25901 -31.47482 -30.73385 -29.69481 -27.56451 -26.50668 -24.67537 -24.24423 -23.11359 -21.75676 -20.89412 -20.75708 -19.16890 -18.50472 -18.19647 -17.95256 -17.24978 -16.66046 -16.50911 -16.17257 -15.90404 -15.63919 -15.38318 -15.12143 -14.74171 -14.38639 -14.21219 -13.96200 -13.86667 -13.62599 -13.50163 -13.25629 -13.08092 -13.00442 -12.89499 -12.86279 -12.62895 -12.50707 -12.46174 -12.42042 -11.80507 -11.79028 -11.66854 -11.52812 -11.29199 -10.92390 -10.59522 -10.30542 -10.09674 -9.51506 -9.16281 -8.04076 -6.05634 0.80594 0.86676 1.13776 1.33610 1.39325 1.42582 1.84596 2.13917 2.32787 2.45726 3.20937 3.37877 3.57592 3.72322 4.13381 4.18826 4.28097 4.31209 4.37990 4.43711 4.47764 4.58100 4.60353 4.68080 4.73424 4.79120 4.84561 4.95998 5.01102 5.02885 5.04496 5.18297 5.26622 5.39812 5.41094 5.49007 5.55528 5.58170 5.66810 5.80227 5.86490 5.98086 6.19261 6.44014 6.49127 6.76794 6.92536 7.03302 7.56988 7.59687 9.05560 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.004486 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.040770 B = 6240.007976 C = 7332.193699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C 0.191 3.809 4 C -0.156 4.156 5 N -0.713 5.713 6 C 0.515 3.485 7 O -0.546 6.546 8 C -0.114 4.114 9 C 0.083 3.917 10 H 0.021 0.979 11 C -0.479 4.479 12 H 0.051 0.949 13 C 0.023 3.977 14 N -0.918 5.918 15 Si 0.929 3.071 16 H -0.294 1.294 17 H -0.289 1.289 18 H -0.259 1.259 19 C -0.044 4.044 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.144 4.144 25 C 0.481 3.519 26 O -0.548 6.548 27 O -0.509 6.509 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.421 0.579 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.251 0.749 40 H 0.119 0.881 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.129 0.871 44 H 0.091 0.909 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -18.711 1.358 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C 0.103 3.897 4 C -0.213 4.213 5 N -0.371 5.371 6 C 0.303 3.697 7 O -0.421 6.421 8 C -0.154 4.154 9 C 0.064 3.936 10 H 0.039 0.961 11 C -0.517 4.517 12 H 0.069 0.931 13 C -0.175 4.175 14 N -0.558 5.558 15 Si 0.757 3.243 16 H -0.221 1.221 17 H -0.216 1.216 18 H -0.183 1.183 19 C -0.044 4.044 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.147 4.147 24 C -0.163 4.163 25 C 0.324 3.676 26 O -0.438 6.438 27 O -0.321 6.321 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.260 0.740 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.060 0.940 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.147 0.853 44 H 0.109 0.891 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -1.122 -17.788 1.076 17.856 hybrid contribution -0.862 1.608 0.055 1.825 sum -1.984 -16.180 1.131 16.340 Atomic orbital electron populations 1.21886 0.94070 1.03599 1.01917 1.21853 0.97345 0.89432 1.06449 1.20298 0.82155 0.98432 0.88824 1.22157 1.02257 1.00907 0.96016 1.45970 1.04337 1.09462 1.77333 1.21125 0.91283 0.83041 0.74267 1.90771 1.70471 1.33048 1.47798 1.21671 0.89986 0.99965 1.03790 1.17608 0.87706 0.91105 0.97195 0.96110 1.20993 1.43088 0.93722 0.93897 0.93129 1.25454 0.95812 0.98573 0.97656 1.70052 1.49930 1.06722 1.29088 0.86004 0.78190 0.77945 0.82171 1.22062 1.21562 1.18278 1.20550 0.97554 0.93662 0.92679 1.21046 0.93946 1.01040 0.98343 1.21378 0.94377 1.00129 0.98510 1.21257 1.00327 1.00470 0.94576 1.21272 0.93149 1.00280 1.00044 1.21090 0.95360 1.01333 0.98487 1.24315 0.80491 0.77446 0.85365 1.90654 1.27574 1.39818 1.85731 1.84500 1.56309 1.70146 1.21180 0.89013 0.94652 0.91901 0.86301 0.88652 0.88744 0.90209 0.94260 0.74040 0.88891 0.87976 0.94007 0.86349 0.84097 0.83981 0.85261 0.89099 0.72214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.25 71.98 0.67 -1.91 16 2 C -0.11 -1.78 5.09 30.59 0.16 -1.62 16 3 C 0.19 5.10 0.80 2.86 0.00 5.10 16 4 C -0.16 -4.74 7.58 71.98 0.55 -4.19 16 5 N -0.71 -19.01 4.87 -426.32 -2.08 -21.08 16 6 C 0.51 19.77 6.90 87.66 0.60 20.37 16 7 O -0.55 -27.65 12.20 -3.04 -0.04 -27.69 16 8 C -0.11 -4.19 4.95 29.85 0.15 -4.04 16 9 C 0.08 4.01 1.67 -12.29 -0.02 3.99 16 10 H 0.02 1.20 6.97 -2.39 -0.02 1.18 16 11 C -0.48 -25.96 6.38 25.60 0.16 -25.80 16 12 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 13 C 0.02 1.37 5.45 84.65 0.46 1.84 16 14 N -0.92 -57.16 12.87 21.45 0.28 -56.88 16 15 Si 0.93 47.26 29.54 68.60 2.03 49.28 16 16 H -0.29 -15.41 7.11 99.48 0.71 -14.71 16 17 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 18 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 19 C -0.04 -1.92 4.77 -19.87 -0.09 -2.02 16 20 C -0.13 -4.75 8.86 22.27 0.20 -4.55 16 21 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 22 C -0.15 -4.55 10.05 22.27 0.22 -4.32 16 23 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 24 C -0.14 -6.17 9.67 22.27 0.22 -5.95 16 25 C 0.48 15.87 4.79 71.24 0.34 16.22 16 26 O -0.55 -21.52 16.22 21.97 0.36 -21.16 16 27 O -0.51 -14.67 13.02 -51.35 -0.67 -15.34 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 0.74 6.83 -2.38 -0.02 0.72 16 30 H 0.06 1.09 6.43 -2.38 -0.02 1.08 16 31 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.08 2.27 6.16 -2.39 -0.01 2.26 16 35 H 0.04 1.62 6.18 -2.39 -0.01 1.61 16 36 H 0.42 7.41 8.47 -92.71 -0.79 6.63 16 37 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.10 3.23 7.78 -2.38 -0.02 3.21 16 39 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 40 H 0.12 4.24 7.76 -2.91 -0.02 4.22 16 41 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 44 H 0.09 4.15 7.95 -2.91 -0.02 4.13 16 45 H 0.42 9.14 9.10 -74.06 -0.67 8.47 16 Total: -1.00 -81.79 371.00 3.49 -78.30 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.44 Total: 29.52 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.06 Total: -14.95 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.80 Total: -77.97 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -0.35 Total: -64.19 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -81.79 3.49 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604909138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.240 kcal (2) G-P(sol) polarization free energy of solvation -81.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds