Wall clock time and date at job start Tue Mar 31 2020 13:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47024 * 2 1 4 4 C 1.53003 * 109.47220 * 60.00054 * 3 2 1 5 5 N 1.46498 * 109.47238 * 180.02562 * 3 2 1 6 6 C 1.34776 * 120.00269 * 179.97438 * 5 3 2 7 7 O 1.21280 * 119.99737 * 0.02562 * 6 5 3 8 8 C 1.50698 * 120.00164 * 180.02562 * 6 5 3 9 9 C 1.52996 * 109.47307 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.47622 * 54.99947 * 9 8 6 11 11 C 1.50707 * 109.46863 * 294.99720 * 9 8 6 12 12 H 1.07997 * 119.99724 * 325.84417 * 11 9 8 13 13 C 1.37878 * 119.99585 * 145.84424 * 11 9 8 14 14 N 1.31509 * 120.00476 * 6.11935 * 13 11 9 15 15 Si 1.86803 * 119.99562 * 186.12153 * 13 11 9 16 16 H 1.48493 * 109.47194 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46859 * 120.00226 * 15 13 11 18 18 H 1.48502 * 109.47045 * 239.99943 * 15 13 11 19 19 C 1.50697 * 109.47344 * 175.00236 * 9 8 6 20 20 C 1.38232 * 120.00369 * 63.46546 * 19 9 8 21 21 C 1.38242 * 120.00009 * 179.81290 * 20 19 9 22 22 C 1.38226 * 119.99854 * 0.39660 * 21 20 19 23 23 C 1.38231 * 120.00335 * 359.85614 * 22 21 20 24 24 C 1.38229 * 119.99930 * 359.95899 * 23 22 21 25 25 C 1.50702 * 109.47424 * 300.00230 * 3 2 1 26 26 O 1.20823 * 119.99896 * 94.99762 * 25 3 2 27 27 O 1.34231 * 119.99925 * 275.00021 * 25 3 2 28 28 H 1.08992 * 109.47458 * 59.99640 * 1 2 3 29 29 H 1.09002 * 109.46857 * 299.99833 * 1 2 3 30 30 H 1.08995 * 109.46769 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47459 * 120.00342 * 2 1 3 32 32 H 1.09002 * 109.46857 * 240.00167 * 2 1 3 33 33 H 1.09002 * 109.46669 * 60.00021 * 4 3 2 34 34 H 1.09000 * 109.47294 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47198 * 300.00318 * 4 3 2 36 36 H 0.97002 * 119.99675 * 0.02562 * 5 3 2 37 37 H 1.09002 * 109.47244 * 300.00317 * 8 6 5 38 38 H 1.08999 * 109.47217 * 59.99629 * 8 6 5 39 39 H 0.96999 * 120.00245 * 179.97438 * 14 13 11 40 40 H 1.08001 * 120.00055 * 0.02562 * 20 19 9 41 41 H 1.08001 * 119.99784 * 180.23036 * 21 20 19 42 42 H 1.08008 * 119.99747 * 179.83730 * 22 21 20 43 43 H 1.08003 * 120.00153 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.99862 * 179.97438 * 24 23 22 45 45 H 0.96696 * 116.99938 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 7 3.5050 1.4426 -0.0006 6 6 4.1789 2.6097 -0.0012 7 8 3.5724 3.6600 -0.0008 8 6 5.6859 2.6098 -0.0025 9 6 6.1959 4.0522 -0.0023 10 1 5.7620 4.5910 0.8399 11 6 5.7962 4.7264 -1.2896 12 1 5.7553 4.1578 -2.2068 13 6 5.4827 6.0691 -1.2960 14 7 5.6477 6.7882 -0.2074 15 14 4.8236 6.8667 -2.8513 16 1 4.7308 5.8489 -3.9285 17 1 3.4755 7.4300 -2.5856 18 1 5.7401 7.9554 -3.2759 19 6 7.6978 4.0540 0.1202 20 6 8.4733 3.4896 -0.8752 21 6 9.8512 3.4947 -0.7646 22 6 10.4533 4.0569 0.3454 23 6 9.6778 4.6167 1.3433 24 6 8.3001 4.6150 1.2309 25 6 1.5376 2.1530 -1.2304 26 8 0.5282 2.8146 -1.1761 27 8 2.2117 2.0507 -2.3867 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 1.6499 2.1392 34 1 1.8937 3.1913 1.2495 35 1 0.4400 2.1637 1.2493 36 1 3.9900 0.6025 -0.0013 37 1 6.0499 2.0960 0.8872 38 1 6.0485 2.0958 -0.8927 39 1 5.4275 7.7328 -0.2121 40 1 8.0027 3.0476 -1.7411 41 1 10.4572 3.0570 -1.5441 42 1 11.5299 4.0586 0.4331 43 1 10.1482 5.0557 2.2108 44 1 7.6941 5.0521 2.0108 45 1 1.8505 2.5239 -3.1487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604909141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:07 Heat of formation + Delta-G solvation = -134.382243 kcal Electronic energy + Delta-G solvation = -27857.089473 eV Core-core repulsion = 24031.197928 eV Total energy + Delta-G solvation = -3825.891544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98038 -40.39399 -39.64750 -37.59441 -36.99487 -35.71755 -33.81104 -33.26151 -31.47305 -30.73307 -29.68731 -27.58429 -26.48367 -24.68065 -24.23967 -23.11187 -21.75465 -20.88530 -20.75647 -19.16461 -18.53579 -18.13434 -17.99050 -17.22776 -16.65408 -16.51816 -16.17893 -15.98346 -15.56686 -15.39121 -15.07734 -14.81462 -14.33444 -14.15659 -14.03044 -13.88667 -13.63636 -13.47264 -13.23349 -13.08457 -13.00994 -12.93418 -12.87208 -12.62264 -12.50693 -12.46257 -12.41575 -11.80060 -11.78876 -11.66384 -11.52234 -11.30444 -10.92870 -10.59847 -10.30793 -10.09065 -9.51347 -9.16292 -8.05160 -6.05816 0.80736 0.86769 1.14651 1.30625 1.35646 1.41341 1.85859 2.12036 2.35357 2.44084 3.20675 3.37197 3.57796 3.72481 4.13417 4.18649 4.28449 4.31474 4.38108 4.43827 4.47871 4.58033 4.60848 4.69050 4.72783 4.79689 4.84967 4.96299 5.01053 5.02913 5.04324 5.17924 5.27133 5.39346 5.41380 5.49427 5.55562 5.58729 5.66793 5.80026 5.86670 5.98211 6.19197 6.43970 6.49253 6.76982 6.92314 7.02877 7.56395 7.59730 9.04624 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.004593 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.243050 B = 6094.142572 C = 7314.196044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C 0.191 3.809 4 C -0.154 4.154 5 N -0.713 5.713 6 C 0.515 3.485 7 O -0.546 6.546 8 C -0.114 4.114 9 C 0.082 3.918 10 H 0.023 0.977 11 C -0.475 4.475 12 H 0.047 0.953 13 C 0.024 3.976 14 N -0.917 5.917 15 Si 0.927 3.073 16 H -0.262 1.262 17 H -0.300 1.300 18 H -0.282 1.282 19 C -0.044 4.044 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.129 4.129 24 C -0.143 4.143 25 C 0.480 3.520 26 O -0.550 6.550 27 O -0.509 6.509 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.421 0.579 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.251 0.749 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.093 0.907 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -18.727 1.462 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C 0.103 3.897 4 C -0.212 4.212 5 N -0.371 5.371 6 C 0.303 3.697 7 O -0.421 6.421 8 C -0.154 4.154 9 C 0.063 3.937 10 H 0.042 0.958 11 C -0.513 4.513 12 H 0.065 0.935 13 C -0.174 4.174 14 N -0.557 5.557 15 Si 0.755 3.245 16 H -0.186 1.186 17 H -0.227 1.227 18 H -0.208 1.208 19 C -0.044 4.044 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.147 4.147 24 C -0.162 4.162 25 C 0.323 3.677 26 O -0.439 6.439 27 O -0.321 6.321 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.259 0.741 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.111 0.889 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.126 -17.811 1.852 17.942 hybrid contribution -0.852 1.614 -1.395 2.297 sum -1.978 -16.197 0.457 16.324 Atomic orbital electron populations 1.21887 0.94071 1.03588 1.01927 1.21857 0.97345 0.89454 1.06437 1.20327 0.82140 0.98437 0.88826 1.22156 1.02321 1.00858 0.95853 1.45974 1.04346 1.09462 1.77324 1.21121 0.91280 0.83045 0.74277 1.90768 1.70464 1.33031 1.47790 1.21668 0.89993 0.99962 1.03794 1.17624 0.87730 0.91125 0.97211 0.95822 1.20992 1.42800 0.93636 0.93895 0.93454 1.25424 0.95905 0.98582 0.97530 1.70044 1.50078 1.06707 1.28880 0.85980 0.77486 0.78967 0.82039 1.18620 1.22734 1.20828 1.20542 0.97520 0.93683 0.92695 1.21041 0.93975 1.01089 0.98337 1.21370 0.94347 1.00174 0.98546 1.21253 1.00337 1.00467 0.94563 1.21274 0.93174 1.00239 1.00018 1.21097 0.95344 1.01248 0.98473 1.24397 0.80450 0.77472 0.85423 1.90646 1.27618 1.39932 1.85748 1.84508 1.56330 1.70053 1.21207 0.94809 0.91724 0.89037 0.86097 0.88879 0.88442 0.94169 0.90196 0.74058 0.88534 0.88343 0.93987 0.86539 0.84182 0.83993 0.85194 0.88909 0.72442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.25 71.98 0.67 -1.90 16 2 C -0.11 -1.77 5.09 30.60 0.16 -1.62 16 3 C 0.19 5.07 0.80 2.86 0.00 5.07 16 4 C -0.15 -4.48 7.58 71.98 0.55 -3.93 16 5 N -0.71 -18.93 4.87 -426.33 -2.08 -21.01 16 6 C 0.51 19.70 6.90 87.66 0.60 20.30 16 7 O -0.55 -27.51 12.19 -3.03 -0.04 -27.55 16 8 C -0.11 -4.18 4.95 29.85 0.15 -4.03 16 9 C 0.08 3.96 1.67 -12.29 -0.02 3.94 16 10 H 0.02 1.35 6.98 -2.39 -0.02 1.34 16 11 C -0.48 -25.90 6.37 25.60 0.16 -25.74 16 12 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 13 C 0.02 1.41 5.45 84.66 0.46 1.87 16 14 N -0.92 -57.02 12.87 21.45 0.28 -56.74 16 15 Si 0.93 47.60 29.54 68.60 2.03 49.63 16 16 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 18 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 19 C -0.04 -1.91 4.77 -19.87 -0.09 -2.01 16 20 C -0.13 -4.79 8.86 22.27 0.20 -4.60 16 21 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 22 C -0.15 -4.53 10.05 22.27 0.22 -4.31 16 23 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 24 C -0.14 -6.06 9.67 22.27 0.22 -5.85 16 25 C 0.48 16.31 4.79 71.24 0.34 16.66 16 26 O -0.55 -22.07 16.22 21.97 0.36 -21.71 16 27 O -0.51 -15.82 13.02 -51.43 -0.67 -16.49 16 28 H 0.03 0.72 6.82 -2.39 -0.02 0.70 16 29 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.58 6.17 -2.39 -0.01 1.57 16 35 H 0.08 2.19 6.16 -2.39 -0.01 2.17 16 36 H 0.42 7.38 8.47 -92.71 -0.79 6.60 16 37 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.10 3.21 7.78 -2.39 -0.02 3.19 16 39 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.12 4.24 7.76 -2.91 -0.02 4.22 16 41 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 42 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.09 4.18 7.95 -2.91 -0.02 4.16 16 45 H 0.42 10.37 9.10 -74.06 -0.67 9.70 16 Total: -1.00 -81.72 370.99 3.49 -78.23 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.44 Total: 29.83 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.06 Total: -14.18 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -1.80 Total: -77.75 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -0.35 Total: -65.75 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -81.72 3.49 -78.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604909141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.156 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds