Wall clock time and date at job start Tue Mar 31 2020 13:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47560 * 2 1 4 4 C 1.53004 * 109.46964 * 175.24680 * 3 2 1 5 5 H 1.09000 * 109.47099 * 304.68274 * 4 3 2 6 6 C 1.50700 * 109.47013 * 184.68651 * 4 3 2 7 7 O 1.21294 * 119.99971 * 262.72312 * 6 4 3 8 8 N 1.34780 * 120.00100 * 82.71747 * 6 4 3 9 9 C 1.37095 * 119.99712 * 175.64994 * 8 6 4 10 10 H 1.08001 * 119.99643 * 224.32985 * 9 8 6 11 11 C 1.38945 * 120.00362 * 44.33819 * 9 8 6 12 12 N 1.31415 * 119.99897 * 2.86660 * 11 9 8 13 13 Si 1.86801 * 120.00332 * 182.86272 * 11 9 8 14 14 H 1.48502 * 109.46943 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46866 * 119.99781 * 13 11 9 16 16 H 1.48497 * 109.47409 * 239.99780 * 13 11 9 17 17 C 1.46500 * 119.99740 * 355.64975 * 8 6 4 18 18 C 1.53006 * 109.46728 * 89.90615 * 17 8 6 19 19 C 1.50697 * 109.46713 * 179.97438 * 18 17 8 20 20 O 1.20829 * 120.00339 * 359.97438 * 19 18 17 21 21 O 1.34230 * 119.99986 * 179.97438 * 19 18 17 22 22 C 1.50697 * 109.47222 * 64.68752 * 4 3 2 23 23 C 1.38232 * 120.00164 * 59.72506 * 22 4 3 24 24 C 1.38239 * 119.99452 * 179.81076 * 23 22 4 25 25 C 1.38226 * 120.00388 * 0.39678 * 24 23 22 26 26 C 1.38236 * 120.00139 * 359.85730 * 25 24 23 27 27 C 1.38231 * 119.99926 * 359.95505 * 26 25 24 28 28 H 1.09005 * 109.46977 * 300.00419 * 1 2 3 29 29 H 1.09002 * 109.47057 * 59.99421 * 1 2 3 30 30 H 1.08993 * 109.47700 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47057 * 120.00579 * 2 1 3 32 32 H 1.09005 * 109.46977 * 239.99581 * 2 1 3 33 33 H 1.08999 * 109.46968 * 295.24291 * 3 2 1 34 34 H 1.08999 * 109.46957 * 55.24801 * 3 2 1 35 35 H 0.97003 * 120.00176 * 184.78477 * 12 11 9 36 36 H 1.08999 * 109.46973 * 209.89697 * 17 8 6 37 37 H 1.08995 * 109.47599 * 329.89936 * 17 8 6 38 38 H 1.08999 * 109.46644 * 299.99284 * 18 17 8 39 39 H 1.08992 * 109.47205 * 59.99610 * 18 17 8 40 40 H 0.96698 * 116.99966 * 180.02562 * 21 19 18 41 41 H 1.08000 * 120.00102 * 359.97438 * 23 22 4 42 42 H 1.08002 * 119.99352 * 180.23221 * 24 23 22 43 43 H 1.08000 * 120.00169 * 179.83603 * 25 24 23 44 44 H 1.07999 * 119.99841 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00301 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5654 1.4439 0.1195 5 1 3.8609 0.8831 1.0062 6 6 4.0588 2.8631 0.2354 7 8 4.4639 3.4465 -0.7479 8 7 4.0499 3.4842 1.4315 9 6 4.5807 4.7423 1.5545 10 1 5.2184 4.9796 2.3932 11 6 4.2980 5.7120 0.6005 12 7 3.4771 5.4405 -0.3892 13 14 5.0847 7.4017 0.7245 14 1 5.9630 7.4522 1.9209 15 1 5.8931 7.6620 -0.4938 16 1 4.0240 8.4341 0.8446 17 6 3.4729 2.8150 2.6000 18 6 4.5592 2.0068 3.3127 19 6 3.9659 1.3189 4.5151 20 8 2.7946 1.4608 4.7756 21 8 4.7386 0.5484 5.2968 22 6 4.1659 0.8017 -1.1044 23 6 3.9238 1.3376 -2.3554 24 6 4.4778 0.7506 -3.4777 25 6 5.2672 -0.3768 -3.3497 26 6 5.5050 -0.9158 -2.0992 27 6 4.9542 -0.3267 -0.9765 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.7480 1.9310 -0.9295 34 1 1.6089 1.9802 0.8444 35 1 3.3334 6.0925 -1.0929 36 1 3.0684 3.5616 3.2834 37 1 2.6746 2.1463 2.2784 38 1 4.9638 1.2602 2.6294 39 1 5.3575 2.6756 3.6343 40 1 4.3132 0.1275 6.0563 41 1 3.3039 2.2163 -2.4557 42 1 4.2917 1.1715 -4.4547 43 1 5.6979 -0.8369 -4.2268 44 1 6.1214 -1.7970 -1.9993 45 1 5.1403 -0.7475 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605193703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:50 Heat of formation + Delta-G solvation = -116.562846 kcal Electronic energy + Delta-G solvation = -28120.935798 eV Core-core repulsion = 24295.816961 eV Total energy + Delta-G solvation = -3825.118837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.38932 -40.86800 -39.37811 -37.12598 -36.54105 -36.19434 -34.14558 -32.77085 -31.65811 -31.60414 -29.66090 -27.05843 -25.95754 -24.83187 -23.47523 -22.87024 -22.12834 -21.50657 -20.57707 -19.10638 -18.35107 -17.76913 -17.69223 -17.07982 -16.77471 -16.63329 -16.23389 -15.84344 -15.60121 -15.49660 -15.14184 -14.59211 -14.35428 -14.29690 -14.13895 -13.93474 -13.84749 -13.41874 -13.26492 -13.05238 -12.91221 -12.80509 -12.67232 -12.52151 -12.46894 -12.17197 -12.11091 -11.99205 -11.83453 -11.76078 -11.56950 -11.52046 -11.36522 -10.83556 -9.87952 -9.59204 -9.41332 -9.02588 -7.94864 -5.96056 0.58050 0.66730 1.26378 1.41731 1.43873 1.53644 2.10535 2.38566 2.61973 2.97408 3.29042 3.37836 3.80423 3.90670 4.00163 4.06172 4.18063 4.19282 4.23322 4.31074 4.38405 4.41522 4.46504 4.61665 4.71033 4.73364 4.79154 4.83633 4.86113 4.93559 4.98469 5.08102 5.13567 5.23004 5.26850 5.32478 5.37807 5.49076 5.54881 5.67051 5.68337 5.74976 5.93421 6.24117 6.28953 7.07307 7.12792 7.30185 7.76898 8.52329 8.98622 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.006440 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.498403 B = 4346.866504 C = 6276.073425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.095 4.095 4 C -0.058 4.058 5 H 0.099 0.901 6 C 0.464 3.536 7 O -0.541 6.541 8 N -0.474 5.474 9 C -0.352 4.352 10 H 0.085 0.915 11 C -0.001 4.001 12 N -0.848 5.848 13 Si 0.970 3.030 14 H -0.255 1.255 15 H -0.296 1.296 16 H -0.282 1.282 17 C 0.120 3.880 18 C -0.126 4.126 19 C 0.498 3.502 20 O -0.546 6.546 21 O -0.510 6.510 22 C -0.068 4.068 23 C -0.098 4.098 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.124 4.124 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.250 0.750 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.427 0.573 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.152 0.848 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -15.786 3.874 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.133 4.133 4 C -0.079 4.079 5 H 0.117 0.883 6 C 0.252 3.748 7 O -0.417 6.417 8 N -0.197 5.197 9 C -0.480 4.480 10 H 0.102 0.898 11 C -0.207 4.207 12 N -0.484 5.484 13 Si 0.796 3.204 14 H -0.179 1.179 15 H -0.222 1.222 16 H -0.209 1.209 17 C -0.004 4.004 18 C -0.165 4.165 19 C 0.341 3.659 20 O -0.437 6.437 21 O -0.323 6.323 22 C -0.069 4.069 23 C -0.117 4.117 24 C -0.158 4.158 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.141 4.141 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.289 0.711 41 H 0.105 0.895 42 H 0.142 0.858 43 H 0.163 0.837 44 H 0.169 0.831 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.750 -15.154 2.981 15.463 hybrid contribution -0.200 1.418 0.269 1.457 sum 0.550 -13.736 3.250 14.126 Atomic orbital electron populations 1.21754 0.95108 1.02313 1.01484 1.21460 0.96366 0.94481 1.02449 1.21472 0.92357 0.98437 1.01005 1.20335 0.96594 0.93819 0.97175 0.88286 1.20545 0.82815 0.87509 0.83951 1.90537 1.47947 1.66086 1.37144 1.43429 1.55171 1.14319 1.06757 1.19402 1.28966 0.87012 1.12660 0.89763 1.26151 0.96483 1.01652 0.96449 1.70209 1.33550 1.34555 1.10109 0.85229 0.77962 0.79294 0.77913 1.17872 1.22249 1.20855 1.21325 0.94105 0.96189 0.88812 1.21805 1.01100 1.00482 0.93108 1.23263 0.83995 0.75341 0.83309 1.90716 1.19285 1.61357 1.72308 1.84513 1.46182 1.59873 1.41767 1.19512 0.98204 0.95688 0.93450 1.20939 0.99719 0.97657 0.93355 1.21302 0.99058 0.97261 0.98204 1.21388 0.98422 0.95934 0.98731 1.21392 1.00059 1.00848 0.91982 1.21272 0.97363 0.95330 1.00177 0.92927 0.93553 0.90926 0.90775 0.91977 0.94133 0.92562 0.94087 0.91823 0.90636 0.86668 0.87036 0.71075 0.89474 0.85816 0.83667 0.83074 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.11 -2.97 5.66 30.59 0.17 -2.80 16 3 C -0.09 -3.38 4.26 30.59 0.13 -3.25 16 4 C -0.06 -2.16 1.54 -12.29 -0.02 -2.18 16 5 H 0.10 3.17 5.60 -2.39 -0.01 3.16 16 6 C 0.46 22.95 6.14 87.66 0.54 23.48 16 7 O -0.54 -31.89 11.46 -3.07 -0.04 -31.93 16 8 N -0.47 -22.90 2.54 -635.53 -1.61 -24.52 16 9 C -0.35 -18.98 9.29 84.04 0.78 -18.20 16 10 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 11 C 0.00 -0.06 4.88 84.92 0.41 0.35 16 12 N -0.85 -51.63 10.46 21.66 0.23 -51.41 16 13 Si 0.97 45.20 29.56 68.60 2.03 47.22 16 14 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 C 0.12 4.58 4.27 86.38 0.37 4.95 16 18 C -0.13 -3.68 5.97 29.85 0.18 -3.50 16 19 C 0.50 12.92 8.33 71.24 0.59 13.51 16 20 O -0.55 -17.40 16.74 21.95 0.37 -17.03 16 21 O -0.51 -9.46 13.42 -51.41 -0.69 -10.15 16 22 C -0.07 -2.46 3.67 -19.87 -0.07 -2.54 16 23 C -0.10 -3.88 7.82 22.27 0.17 -3.71 16 24 C -0.14 -4.57 10.05 22.27 0.22 -4.35 16 25 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 26 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 27 C -0.12 -3.56 9.67 22.27 0.22 -3.34 16 28 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.68 7.53 -2.38 -0.02 1.67 16 33 H 0.04 1.65 7.22 -2.39 -0.02 1.64 16 34 H 0.06 2.12 6.37 -2.39 -0.02 2.10 16 35 H 0.25 14.90 8.32 -92.71 -0.77 14.13 16 36 H 0.06 2.58 8.00 -2.39 -0.02 2.56 16 37 H 0.08 2.76 4.86 -2.39 -0.01 2.75 16 38 H 0.12 3.04 6.86 -2.39 -0.02 3.02 16 39 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.43 3.91 9.10 -74.06 -0.67 3.23 16 41 H 0.09 4.08 6.92 -2.91 -0.02 4.06 16 42 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.14 3.22 7.95 -2.91 -0.02 3.20 16 Total: -1.00 -76.13 368.49 5.47 -70.66 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.33 Total: 27.61 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.86 Total: -10.46 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.39 Total: -75.93 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -0.36 Total: -59.11 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -76.13 5.47 -70.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605193703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.906 kcal (2) G-P(sol) polarization free energy of solvation -76.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds