Wall clock time and date at job start Tue Mar 31 2020 12:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.53002 * 109.46769 * 240.00335 * 2 1 3 5 5 C 1.50696 * 109.47061 * 59.99826 * 4 2 1 6 6 H 1.08000 * 120.00515 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00130 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00322 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99768 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47355 * 89.99599 * 9 7 5 11 11 H 1.48499 * 109.47033 * 209.99668 * 9 7 5 12 12 H 1.48504 * 109.47450 * 329.99428 * 9 7 5 13 13 C 1.52994 * 109.47230 * 120.00670 * 2 1 3 14 14 N 1.46500 * 109.47083 * 299.99776 * 13 2 1 15 15 C 1.39606 * 120.00305 * 180.02562 * 14 13 2 16 16 C 1.38761 * 120.10972 * 0.29128 * 15 14 13 17 17 C 1.38134 * 120.06402 * 180.28349 * 16 15 14 18 18 C 1.38588 * 120.29398 * 359.71767 * 17 16 15 19 19 F 1.35097 * 119.88631 * 180.02562 * 18 17 16 20 20 C 1.38201 * 120.22261 * 359.97438 * 18 17 16 21 21 C 1.39263 * 119.92966 * 0.02562 * 20 18 17 22 22 C 1.48371 * 120.14067 * 180.02562 * 21 20 18 23 23 N 1.34082 * 126.67575 * 179.97438 * 22 21 20 24 24 N 1.28983 * 107.26281 * 179.97438 * 23 22 21 25 25 N 1.28728 * 108.95568 * 0.02562 * 24 23 22 26 26 H 0.96997 * 125.33715 * 180.26535 * 25 24 23 27 27 N 1.28874 * 109.32466 * 359.97438 * 25 24 23 28 28 H 1.09005 * 109.46856 * 299.99643 * 1 2 3 29 29 H 1.08999 * 109.47084 * 59.99241 * 1 2 3 30 30 H 1.08997 * 109.47412 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46859 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47239 * 300.00655 * 3 2 1 33 33 H 1.09003 * 109.46644 * 60.00860 * 3 2 1 34 34 H 1.08993 * 109.47332 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47415 * 300.00094 * 4 2 1 36 36 H 0.97000 * 119.99947 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47405 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47439 * 59.99384 * 13 2 1 39 39 H 0.97004 * 120.00048 * 359.97438 * 14 13 2 40 40 H 1.08000 * 119.96645 * 359.97438 * 16 15 14 41 41 H 1.08001 * 119.85113 * 179.70564 * 17 16 15 42 42 H 1.08004 * 120.03475 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 1.4321 0.1383 -4.8058 9 14 2.9449 -2.0002 -3.9036 10 1 2.0863 -3.2109 -3.9495 11 1 3.7371 -1.9073 -5.1562 12 1 3.8651 -2.0897 -2.7414 13 6 2.0401 -0.7214 1.2491 14 7 1.5518 -0.0309 2.4453 15 6 1.8895 -0.5076 3.7133 16 6 2.6925 -1.6318 3.8432 17 6 3.0212 -2.1061 5.0982 18 6 2.5571 -1.4604 6.2333 19 9 2.8841 -1.9311 7.4566 20 6 1.7618 -0.3361 6.1179 21 6 1.4247 0.1501 4.8572 22 6 0.5716 1.3572 4.7278 23 7 0.1695 1.9352 3.5868 24 7 -0.5536 2.9538 3.9078 25 7 -0.6174 3.0336 5.1910 26 1 -1.1038 3.7102 5.6876 27 7 0.0612 2.0701 5.7125 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 3.1299 -0.7209 -1.2496 35 1 1.6766 -1.7488 -1.2494 36 1 1.6664 -0.1931 -5.6869 37 1 3.1301 -0.7210 1.2494 38 1 1.6767 -1.7490 1.2491 39 1 0.9944 0.7581 2.3564 40 1 3.0567 -2.1393 2.9622 41 1 3.6425 -2.9841 5.1953 42 1 1.4014 0.1645 7.0045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609083056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:17 Heat of formation + Delta-G solvation = 98.989984 kcal Electronic energy + Delta-G solvation = -26581.805194 eV Core-core repulsion = 22707.158626 eV Total energy + Delta-G solvation = -3874.646568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.75219 -44.62289 -39.68559 -37.52496 -34.75147 -34.10791 -33.74666 -32.20786 -30.82692 -29.05029 -27.52593 -26.46497 -26.04797 -25.06440 -24.42211 -22.75701 -21.84620 -21.35885 -19.50422 -18.22530 -17.58604 -17.30815 -17.13311 -16.77897 -16.24983 -15.52616 -15.12642 -14.87823 -14.51306 -14.32596 -14.05657 -13.79891 -13.46985 -13.23075 -13.05316 -12.72505 -12.69625 -12.34897 -12.28118 -12.21770 -11.56676 -11.49176 -11.29301 -11.09892 -11.07777 -10.98984 -10.96418 -10.58757 -10.42901 -10.05008 -9.78511 -9.70024 -9.48980 -9.06055 -8.97666 -8.52861 -7.29824 -6.02850 -3.99925 0.54839 1.00750 1.31895 2.05461 2.15803 3.30465 3.37882 3.38899 3.40655 3.60415 3.64294 3.95090 4.41329 4.45459 4.76009 4.76886 5.07123 5.20440 5.24492 5.29351 5.40717 5.50245 5.51558 5.68638 5.74428 5.95376 6.03243 6.08776 6.12597 6.14088 6.19538 6.24657 6.43353 6.59237 6.66825 6.69129 6.95236 7.07139 7.09253 7.21449 7.32559 7.37323 7.79510 7.83968 8.12044 8.55302 9.02461 9.59413 11.10074 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.003562 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.802762 B = 7858.224054 C = 9567.641646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.001 4.001 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.118 3.882 14 N -0.716 5.716 15 C 0.262 3.738 16 C -0.179 4.179 17 C -0.073 4.073 18 C 0.016 3.984 19 F -0.147 7.147 20 C -0.058 4.058 21 C -0.096 4.096 22 C 0.240 3.760 23 N -0.285 5.285 24 N -0.038 5.038 25 N -0.227 5.227 26 H 0.475 0.525 27 N -0.302 5.302 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.420 0.580 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 1.088 23.426 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 C -0.187 4.187 4 C -0.039 4.039 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.190 1.190 13 C -0.005 4.005 14 N -0.348 5.348 15 C 0.148 3.852 16 C -0.202 4.202 17 C -0.094 4.094 18 C -0.006 4.006 19 F -0.126 7.126 20 C -0.080 4.080 21 C -0.106 4.106 22 C -0.039 4.039 23 N -0.158 5.158 24 N -0.033 5.033 25 N -0.073 5.073 26 H 0.329 0.671 27 N -0.154 5.154 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.266 0.734 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.042 1.503 22.680 22.753 hybrid contribution 0.324 -0.507 0.461 0.758 sum -0.719 0.995 23.140 23.173 Atomic orbital electron populations 1.21777 0.94717 1.01060 1.01187 1.20626 0.95976 0.95962 0.93406 1.21773 1.00109 0.95648 1.01191 1.19597 0.96154 0.95416 0.92739 1.21096 1.31735 1.13355 0.88596 0.90358 1.25009 0.95751 0.96748 0.95983 1.69905 1.45955 1.40586 0.97868 0.86852 0.81278 0.83955 0.77605 1.20416 1.21553 1.19044 1.21809 0.98475 0.96103 0.84156 1.45906 1.54327 1.32850 1.01669 1.17876 0.90779 0.91340 0.85234 1.20526 1.03691 0.98126 0.97887 1.21049 0.98164 0.99258 0.90916 1.17067 1.05312 0.97942 0.80232 1.91460 1.91723 1.88172 1.41197 1.20723 0.95952 0.94518 0.96790 1.16301 1.06472 0.95261 0.92560 1.23462 0.98715 0.97200 0.84503 1.75491 1.11778 1.03899 1.24636 1.78924 1.13959 1.14114 0.96287 1.47676 1.33628 1.21252 1.04777 0.67053 1.74916 1.12559 1.01657 1.26278 0.94461 0.90971 0.93629 0.93627 0.90967 0.94448 0.96427 0.96877 0.92825 0.92019 0.92021 0.73372 0.84063 0.84506 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.05 37.16 0.30 -2.10 16 2 C -0.06 -1.09 0.54 -154.51 -0.08 -1.18 16 3 C -0.13 -2.39 8.05 37.16 0.30 -2.10 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.62 8.20 -34.44 -0.28 -13.91 16 6 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.88 21.11 27.47 -169.99 -4.67 16.45 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.12 1.82 3.80 -4.04 -0.02 1.80 16 14 N -0.72 -10.42 5.07 -58.43 -0.30 -10.72 16 15 C 0.26 3.45 6.66 -83.50 -0.56 2.89 16 16 C -0.18 -2.04 9.30 -39.43 -0.37 -2.41 16 17 C -0.07 -0.76 10.01 -39.49 -0.40 -1.15 16 18 C 0.02 0.18 7.29 -39.47 -0.29 -0.11 16 19 F -0.15 -1.70 17.26 2.25 0.04 -1.66 16 20 C -0.06 -0.66 9.67 -39.21 -0.38 -1.04 16 21 C -0.10 -1.22 5.89 -104.72 -0.62 -1.84 16 22 C 0.24 3.11 7.90 -156.29 -1.23 1.87 16 23 N -0.28 -3.96 9.45 32.14 0.30 -3.66 16 24 N -0.04 -0.44 13.47 60.35 0.81 0.37 16 25 N -0.23 -1.91 7.90 60.35 0.48 -1.43 16 26 H 0.48 1.57 8.96 -340.36 -3.05 -1.48 16 27 N -0.30 -3.25 12.08 32.16 0.39 -2.86 16 28 H 0.04 0.63 6.86 -51.93 -0.36 0.27 16 29 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 33 H 0.04 0.63 6.86 -51.93 -0.36 0.27 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 35 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 38 H 0.06 0.90 7.96 -51.93 -0.41 0.49 16 39 H 0.42 6.41 2.71 -40.82 -0.11 6.29 16 40 H 0.14 1.47 6.73 -52.49 -0.35 1.11 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.14 1.39 7.88 -52.48 -0.41 0.98 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -31.40 343.83 -8.46 -39.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.67 Total: 2.53 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -3.80 Total: -17.62 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 2.46 Total: -44.73 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.40 -8.46 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609083056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.849 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds