Wall clock time and date at job start Tue Mar 31 2020 12:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.53002 * 109.46769 * 240.00335 * 2 1 3 5 5 C 1.50696 * 109.47061 * 59.99826 * 4 2 1 6 6 H 1.08000 * 120.00515 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00130 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00322 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99768 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47355 * 89.99599 * 9 7 5 11 11 H 1.48499 * 109.47033 * 209.99668 * 9 7 5 12 12 H 1.48504 * 109.47450 * 329.99428 * 9 7 5 13 13 C 1.52994 * 109.47230 * 120.00670 * 2 1 3 14 14 N 1.46500 * 109.47083 * 299.99776 * 13 2 1 15 15 C 1.39606 * 120.00305 * 180.02562 * 14 13 2 16 16 C 1.38761 * 120.10972 * 0.29128 * 15 14 13 17 17 C 1.38134 * 120.06402 * 180.28349 * 16 15 14 18 18 C 1.38588 * 120.29398 * 359.71767 * 17 16 15 19 19 F 1.35097 * 119.88631 * 180.02562 * 18 17 16 20 20 C 1.38201 * 120.22261 * 359.97438 * 18 17 16 21 21 C 1.39263 * 119.92966 * 0.02562 * 20 18 17 22 22 C 1.48371 * 120.14067 * 180.02562 * 21 20 18 23 23 N 1.34082 * 126.67575 * 179.97438 * 22 21 20 24 24 N 1.28983 * 107.26281 * 179.97438 * 23 22 21 25 25 N 1.28728 * 108.95568 * 0.02562 * 24 23 22 26 26 H 0.96997 * 125.33715 * 180.26535 * 25 24 23 27 27 N 1.28874 * 109.32466 * 359.97438 * 25 24 23 28 28 H 1.09005 * 109.46856 * 299.99643 * 1 2 3 29 29 H 1.08999 * 109.47084 * 59.99241 * 1 2 3 30 30 H 1.08997 * 109.47412 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46859 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47239 * 300.00655 * 3 2 1 33 33 H 1.09003 * 109.46644 * 60.00860 * 3 2 1 34 34 H 1.08993 * 109.47332 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47415 * 300.00094 * 4 2 1 36 36 H 0.97000 * 119.99947 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47405 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47439 * 59.99384 * 13 2 1 39 39 H 0.97004 * 120.00048 * 359.97438 * 14 13 2 40 40 H 1.08000 * 119.96645 * 359.97438 * 16 15 14 41 41 H 1.08001 * 119.85113 * 179.70564 * 17 16 15 42 42 H 1.08004 * 120.03475 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 1.4321 0.1383 -4.8058 9 14 2.9449 -2.0002 -3.9036 10 1 2.0863 -3.2109 -3.9495 11 1 3.7371 -1.9073 -5.1562 12 1 3.8651 -2.0897 -2.7414 13 6 2.0401 -0.7214 1.2491 14 7 1.5518 -0.0309 2.4453 15 6 1.8895 -0.5076 3.7133 16 6 2.6925 -1.6318 3.8432 17 6 3.0212 -2.1061 5.0982 18 6 2.5571 -1.4604 6.2333 19 9 2.8841 -1.9311 7.4566 20 6 1.7618 -0.3361 6.1179 21 6 1.4247 0.1501 4.8572 22 6 0.5716 1.3572 4.7278 23 7 0.1695 1.9352 3.5868 24 7 -0.5536 2.9538 3.9078 25 7 -0.6174 3.0336 5.1910 26 1 -1.1038 3.7102 5.6876 27 7 0.0612 2.0701 5.7125 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 3.1299 -0.7209 -1.2496 35 1 1.6766 -1.7488 -1.2494 36 1 1.6664 -0.1931 -5.6869 37 1 3.1301 -0.7210 1.2494 38 1 1.6767 -1.7490 1.2491 39 1 0.9944 0.7581 2.3564 40 1 3.0567 -2.1393 2.9622 41 1 3.6425 -2.9841 5.1953 42 1 1.4014 0.1645 7.0045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609083056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:17 Heat of formation + Delta-G solvation = 79.604212 kcal Electronic energy + Delta-G solvation = -26582.645824 eV Core-core repulsion = 22707.158626 eV Total energy + Delta-G solvation = -3875.487198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.62987 -45.48430 -40.64867 -38.87047 -35.76747 -35.27250 -34.61429 -34.13184 -31.67549 -30.35277 -29.12587 -27.99357 -27.21676 -25.98549 -25.35504 -24.34266 -22.80401 -22.43425 -20.36612 -19.61086 -18.85970 -18.46859 -18.16356 -18.10253 -17.23408 -16.40311 -16.27223 -16.03047 -15.76861 -15.73198 -15.33624 -15.01222 -14.67207 -14.52421 -14.21268 -14.13375 -13.91318 -13.61745 -13.57972 -13.19021 -12.90931 -12.77268 -12.66121 -12.43451 -12.35576 -12.27178 -12.17814 -11.91292 -11.84577 -11.69971 -11.49932 -11.13823 -10.86615 -10.80143 -10.66358 -9.89827 -8.26983 -8.17901 -6.18966 -0.29920 0.14379 0.43205 1.25555 1.41512 1.41552 1.43282 1.53891 2.42004 2.43927 2.69332 2.73105 3.07175 3.17680 3.56004 3.90686 3.93506 3.99516 4.10649 4.19105 4.26127 4.36698 4.38502 4.61401 4.69680 4.77590 4.77764 4.89662 4.97559 5.05734 5.10683 5.13670 5.22875 5.28627 5.34036 5.41436 5.42781 5.57327 5.60875 5.69464 5.78656 5.84071 6.30978 6.44752 6.83186 6.88753 7.16364 7.43522 8.98341 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.003562 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.802762 B = 7858.224054 C = 9567.641646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C -0.122 4.122 4 C 0.000 4.000 5 C -0.505 4.505 6 H 0.042 0.958 7 C 0.000 4.000 8 N -0.957 5.957 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.241 1.241 13 C 0.129 3.871 14 N -0.726 5.726 15 C 0.246 3.754 16 C -0.179 4.179 17 C -0.065 4.065 18 C 0.013 3.987 19 F -0.149 7.149 20 C -0.058 4.058 21 C -0.105 4.105 22 C 0.226 3.774 23 N -0.314 5.314 24 N -0.051 5.051 25 N -0.196 5.196 26 H 0.495 0.505 27 N -0.297 5.297 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.415 0.585 40 H 0.154 0.846 41 H 0.164 0.836 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -0.606 26.042 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.037 4.037 5 C -0.544 4.544 6 H 0.060 0.940 7 C -0.195 4.195 8 N -0.599 5.599 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.220 1.220 12 H -0.164 1.164 13 C 0.005 3.995 14 N -0.359 5.359 15 C 0.134 3.866 16 C -0.201 4.201 17 C -0.086 4.086 18 C -0.008 4.008 19 F -0.128 7.128 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.053 4.053 23 N -0.187 5.187 24 N -0.046 5.046 25 N -0.048 5.048 26 H 0.354 0.646 27 N -0.149 5.149 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.261 0.739 40 H 0.172 0.828 41 H 0.181 0.819 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.152 -0.183 25.350 25.351 hybrid contribution -0.145 0.151 -0.205 0.293 sum 0.007 -0.032 25.145 25.145 Atomic orbital electron populations 1.21669 0.95025 1.01051 1.00202 1.20511 0.95700 0.95751 0.93777 1.21665 1.00286 0.95771 1.00210 1.19547 0.96315 0.95570 0.92300 1.21415 1.30217 1.12163 0.90561 0.94010 1.25945 0.97605 1.00337 0.95661 1.70076 1.48339 1.42965 0.98493 0.85783 0.79708 0.79753 0.78143 1.19589 1.21951 1.16379 1.21577 0.99014 0.96037 0.82855 1.45771 1.55159 1.33067 1.01885 1.18066 0.91650 0.92183 0.84673 1.20707 1.03112 0.97513 0.98805 1.21298 0.97595 0.99617 0.90043 1.17222 1.05193 0.97938 0.80458 1.91460 1.91722 1.88169 1.41418 1.20810 0.95835 0.94617 0.96683 1.16430 1.06657 0.95373 0.92932 1.23620 0.99336 0.97747 0.84629 1.75455 1.12859 1.04774 1.25571 1.78865 1.14294 1.14035 0.97407 1.47742 1.32166 1.20722 1.04149 0.64591 1.74883 1.12427 1.01766 1.25854 0.93060 0.94270 0.93075 0.93100 0.94257 0.93048 0.95795 0.95966 0.92976 0.90871 0.90815 0.73938 0.82806 0.81885 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 8.05 71.98 0.58 -3.94 16 2 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 3 C -0.12 -4.51 8.05 71.98 0.58 -3.93 16 4 C 0.00 0.02 3.11 29.85 0.09 0.11 16 5 C -0.51 -27.61 8.20 25.60 0.21 -27.40 16 6 H 0.04 2.53 5.92 -2.91 -0.02 2.52 16 7 C 0.00 0.00 5.47 84.66 0.46 0.47 16 8 N -0.96 -59.57 13.96 21.45 0.30 -59.27 16 9 Si 0.94 43.12 27.47 68.60 1.88 45.00 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 13 C 0.13 3.66 3.80 86.38 0.33 3.99 16 14 N -0.73 -19.86 5.07 -338.76 -1.72 -21.58 16 15 C 0.25 5.97 6.66 38.43 0.26 6.23 16 16 C -0.18 -3.53 9.30 22.37 0.21 -3.32 16 17 C -0.07 -1.13 10.01 22.33 0.22 -0.91 16 18 C 0.01 0.26 7.29 22.34 0.16 0.43 16 19 F -0.15 -3.07 17.26 44.97 0.78 -2.29 16 20 C -0.06 -1.19 9.67 22.51 0.22 -0.97 16 21 C -0.10 -2.48 5.89 -19.93 -0.12 -2.60 16 22 C 0.23 5.55 7.90 137.33 1.08 6.64 16 23 N -0.31 -8.49 9.45 -52.21 -0.49 -8.99 16 24 N -0.05 -1.15 13.47 37.02 0.50 -0.65 16 25 N -0.20 -2.99 7.90 37.02 0.29 -2.69 16 26 H 0.49 2.29 8.96 -347.53 -3.12 -0.83 16 27 N -0.30 -5.88 12.08 -52.16 -0.63 -6.51 16 28 H 0.05 1.73 6.86 -2.38 -0.02 1.71 16 29 H 0.04 1.67 6.62 -2.39 -0.02 1.66 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 33 H 0.05 1.73 6.86 -2.39 -0.02 1.72 16 34 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 35 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.07 1.91 7.94 -2.39 -0.02 1.89 16 38 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 39 H 0.41 12.23 2.71 -92.71 -0.25 11.98 16 40 H 0.15 2.62 6.73 -2.91 -0.02 2.60 16 41 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.15 2.67 7.88 -2.91 -0.02 2.65 16 Total: -1.00 -69.13 343.83 2.84 -66.29 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -2.33 Total: 18.00 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 4.26 Total: -27.30 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -1.75 Total: -99.70 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Total: -69.13 2.84 -66.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609083056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.893 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds