Wall clock time and date at job start Tue Mar 31 2020 12:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 C 1.53009 * 109.46889 * 240.00461 * 2 1 3 5 5 C 1.50703 * 109.46895 * 59.99654 * 4 2 1 6 6 H 1.07992 * 120.00217 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99563 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46821 * 90.00442 * 9 7 5 11 11 H 1.48500 * 109.47578 * 210.00204 * 9 7 5 12 12 H 1.48501 * 109.47137 * 330.00548 * 9 7 5 13 13 C 1.53000 * 109.47523 * 120.00453 * 2 1 3 14 14 O 1.45200 * 109.46619 * 300.00062 * 13 2 1 15 15 C 1.34231 * 116.99732 * 180.02562 * 14 13 2 16 16 O 1.20832 * 119.99806 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00210 * 180.02562 * 15 14 13 18 18 C 1.50694 * 109.47119 * 179.97438 * 17 15 14 19 19 C 1.38364 * 119.85421 * 89.99568 * 18 17 15 20 20 C 1.37967 * 120.14264 * 179.97438 * 19 18 17 21 21 C 1.39570 * 119.85310 * 0.02562 * 20 19 18 22 22 C 1.47842 * 120.14248 * 179.97438 * 21 20 19 23 23 N 1.34784 * 120.00082 * 180.02562 * 22 21 20 24 24 O 1.21552 * 120.00146 * 359.97438 * 22 21 20 25 25 C 1.39581 * 119.71335 * 0.25292 * 21 20 19 26 26 C 1.37955 * 119.84955 * 359.46623 * 25 21 20 27 27 H 1.09002 * 109.47261 * 299.99121 * 1 2 3 28 28 H 1.08993 * 109.47288 * 59.99960 * 1 2 3 29 29 H 1.09001 * 109.46721 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47360 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47104 * 300.00831 * 3 2 1 32 32 H 1.09000 * 109.46834 * 60.00315 * 3 2 1 33 33 H 1.08999 * 109.46752 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47127 * 299.99369 * 4 2 1 35 35 H 0.96999 * 120.00214 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46951 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46927 * 59.99896 * 13 2 1 38 38 H 1.08997 * 109.46887 * 59.99533 * 17 15 14 39 39 H 1.09007 * 109.46587 * 299.99606 * 17 15 14 40 40 H 1.07998 * 119.92639 * 0.02562 * 19 18 17 41 41 H 1.07996 * 120.07026 * 180.02562 * 20 19 18 42 42 H 0.97000 * 119.99339 * 359.97438 * 23 22 21 43 43 H 0.96995 * 120.00015 * 179.72522 * 23 22 21 44 44 H 1.07995 * 120.07371 * 179.72649 * 25 21 20 45 45 H 1.08002 * 119.92829 * 180.27238 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 2.6271 -1.5506 -3.8528 9 14 1.2477 0.3988 -5.2572 10 1 2.2251 1.4412 -5.6613 11 1 1.0834 -0.5803 -6.3615 12 1 -0.0610 1.0354 -4.9613 13 6 2.0401 -0.7213 1.2492 14 8 1.5561 -0.0369 2.4347 15 6 1.9173 -0.5467 3.6228 16 8 2.6151 -1.5319 3.6704 17 6 1.4524 0.1097 4.8972 18 6 1.9914 -0.6522 6.0803 19 6 3.2173 -0.3073 6.6212 20 6 3.7162 -1.0006 7.7047 21 6 2.9817 -2.0522 8.2547 22 6 3.5104 -2.7997 9.4154 23 7 2.7989 -3.8151 9.9440 24 8 4.5873 -2.4993 9.8925 25 6 1.7483 -2.3988 7.7006 26 6 1.2582 -1.6937 6.6209 27 1 -0.3634 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7208 -1.2496 34 1 1.6767 -1.7489 -1.2494 35 1 2.8620 -1.8815 -4.7338 36 1 3.1301 -0.7217 1.2488 37 1 1.6768 -1.7490 1.2491 38 1 0.3629 0.1082 4.9301 39 1 1.8155 1.1370 4.9301 40 1 3.7845 0.5069 6.1948 41 1 4.6730 -0.7301 8.1262 42 1 1.9397 -4.0550 9.5631 43 1 3.1477 -4.3081 10.7031 44 1 1.1771 -3.2143 8.1188 45 1 0.3020 -1.9579 6.1938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649214485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:22 Heat of formation + Delta-G solvation = -145.520717 kcal Electronic energy + Delta-G solvation = -25681.857172 eV Core-core repulsion = 21855.482627 eV Total energy + Delta-G solvation = -3826.374545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68264 -41.02498 -39.46393 -38.58719 -36.83403 -35.04246 -34.41106 -33.80255 -31.91199 -29.82784 -29.05818 -27.93014 -27.67873 -25.21231 -24.28578 -23.69720 -22.08499 -21.20204 -19.89847 -19.21061 -18.68698 -18.31437 -17.96473 -17.49519 -17.23148 -16.51966 -16.19670 -16.14060 -15.86978 -15.86267 -15.21704 -15.17180 -14.73310 -14.58260 -14.30455 -14.05860 -14.01639 -13.76311 -13.33521 -13.11088 -12.89294 -12.77549 -12.71066 -12.63868 -12.29940 -12.22692 -12.01840 -11.95442 -11.80982 -11.60002 -11.33629 -11.25653 -11.01693 -10.88496 -10.77964 -10.52412 -9.97530 -9.85903 -8.15357 -6.23156 -0.28120 0.39409 1.24452 1.43175 1.43636 1.53966 1.57668 1.96551 2.44576 2.50223 2.85730 3.19181 3.50034 3.76312 3.83370 3.91346 3.95955 3.97254 4.00175 4.24987 4.26417 4.36182 4.56645 4.59219 4.60938 4.63111 4.76354 4.81486 5.01400 5.04654 5.11615 5.16359 5.22225 5.31200 5.44504 5.47885 5.48247 5.50343 5.55301 5.57150 5.76418 5.80931 5.87976 5.88531 6.28693 6.36775 6.77950 6.91175 7.23621 7.44515 8.97178 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.001991 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.807485 B =14058.699002 C =14251.103637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.961 3.039 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.259 1.259 13 C 0.091 3.909 14 O -0.345 6.345 15 C 0.455 3.545 16 O -0.543 6.543 17 C -0.070 4.070 18 C -0.056 4.056 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.156 4.156 22 C 0.560 3.440 23 N -0.828 5.828 24 O -0.591 6.591 25 C -0.078 4.078 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.070 0.930 33 H -0.013 1.013 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.127 0.873 42 H 0.417 0.583 43 H 0.413 0.587 44 H 0.163 0.837 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 1.703 26.438 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.183 1.183 13 C 0.017 3.983 14 O -0.261 6.261 15 C 0.300 3.700 16 O -0.433 6.433 17 C -0.106 4.106 18 C -0.056 4.056 19 C -0.138 4.138 20 C -0.096 4.096 21 C -0.159 4.159 22 C 0.347 3.653 23 N -0.392 5.392 24 O -0.473 6.473 25 C -0.096 4.096 26 C -0.134 4.134 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.250 0.750 43 H 0.245 0.755 44 H 0.181 0.819 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.818 1.599 26.472 27.383 hybrid contribution 0.359 -0.664 -1.156 1.380 sum -6.459 0.936 25.316 26.144 Atomic orbital electron populations 1.21645 0.93310 1.00903 1.01764 1.20630 0.97271 0.96520 0.91172 1.21653 0.99585 0.94699 1.01775 1.18998 0.94378 0.94346 0.92110 1.21546 1.30569 1.12125 0.90909 0.90912 1.25965 0.95665 0.95885 1.02770 1.70115 1.38706 1.24904 1.24173 0.85504 0.79210 0.78087 0.78603 1.20160 1.21487 1.18291 1.23050 0.98000 0.95315 0.81892 1.86467 1.69364 1.55545 1.14705 1.24377 0.76953 0.82292 0.86405 1.90698 1.36878 1.27364 1.88361 1.20532 1.05638 1.00952 0.83520 1.19770 0.94668 0.96197 0.95002 1.21224 0.95550 1.00953 0.96038 1.21311 0.99359 0.93886 0.95043 1.19996 0.97722 0.99671 0.98488 1.18501 0.83637 0.80286 0.82853 1.43575 1.24666 1.34490 1.36518 1.90792 1.23697 1.69019 1.63803 1.21566 0.93655 0.99152 0.95251 1.21346 1.01344 0.94530 0.96166 0.91024 0.92725 0.94318 0.94522 0.92645 0.91078 0.99447 0.99266 0.93111 0.92951 0.92646 0.83142 0.83849 0.84146 0.85543 0.74991 0.75454 0.81944 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 8.08 71.98 0.58 -3.57 16 2 C -0.06 -2.17 0.61 -52.18 -0.03 -2.20 16 3 C -0.12 -4.24 8.08 71.98 0.58 -3.66 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.53 7.65 25.60 0.20 -27.34 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 9 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 C 0.09 3.25 4.32 71.98 0.31 3.56 16 14 O -0.34 -9.75 8.88 -51.42 -0.46 -10.21 16 15 C 0.46 11.45 7.95 71.24 0.57 12.02 16 16 O -0.54 -18.05 15.78 21.95 0.35 -17.71 16 17 C -0.07 -0.96 5.93 29.10 0.17 -0.79 16 18 C -0.06 -0.92 4.38 -19.81 -0.09 -1.00 16 19 C -0.12 -2.19 9.68 22.24 0.22 -1.97 16 20 C -0.08 -1.59 9.60 22.53 0.22 -1.37 16 21 C -0.16 -2.86 5.87 -20.09 -0.12 -2.98 16 22 C 0.56 10.94 8.05 86.78 0.70 11.63 16 23 N -0.83 -7.74 8.83 -175.60 -1.55 -9.29 16 24 O -0.59 -16.95 17.18 -3.88 -0.07 -17.02 16 25 C -0.08 -0.99 9.54 22.53 0.21 -0.77 16 26 C -0.12 -1.59 9.68 22.23 0.22 -1.38 16 27 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 28 H 0.05 2.02 6.62 -2.39 -0.02 2.01 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 2.06 6.62 -2.39 -0.02 2.05 16 32 H 0.07 2.06 7.68 -2.39 -0.02 2.04 16 33 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.05 1.98 8.13 -2.39 -0.02 1.96 16 37 H 0.06 2.06 8.13 -2.39 -0.02 2.05 16 38 H 0.15 1.13 8.08 -2.39 -0.02 1.11 16 39 H 0.14 1.29 8.08 -2.38 -0.02 1.27 16 40 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.13 2.75 7.65 -2.91 -0.02 2.73 16 42 H 0.42 1.10 6.86 -92.71 -0.64 0.46 16 43 H 0.41 2.87 8.93 -92.71 -0.83 2.04 16 44 H 0.16 0.72 6.41 -2.91 -0.02 0.70 16 45 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -78.35 377.28 4.46 -73.90 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -0.44 Total: 8.91 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 4.31 Total: -17.59 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.26 Total: -65.69 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.18 Total: -44.94 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -78.35 4.46 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649214485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.625 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds