Wall clock time and date at job start Tue Mar 31 2020 13:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47389 * 180.02562 * 3 2 1 5 5 C 1.36743 * 119.99965 * 264.66990 * 4 3 2 6 6 H 1.08007 * 120.00070 * 145.35919 * 5 4 3 7 7 C 1.39090 * 120.00145 * 325.36073 * 5 4 3 8 8 N 1.31340 * 119.99869 * 338.62711 * 7 5 4 9 9 Si 1.86796 * 120.00313 * 158.62832 * 7 5 4 10 10 H 1.48502 * 109.47383 * 89.99665 * 9 7 5 11 11 H 1.48500 * 109.47203 * 210.00006 * 9 7 5 12 12 H 1.48509 * 109.47066 * 329.99918 * 9 7 5 13 13 C 1.34782 * 120.00023 * 84.66506 * 4 3 2 14 14 O 1.21778 * 119.99903 * 180.02562 * 13 4 3 15 15 C 1.41804 * 119.99753 * 0.28122 * 13 4 3 16 16 C 1.35138 * 119.99598 * 179.72637 * 15 13 4 17 17 C 1.46948 * 119.99973 * 180.02562 * 16 15 13 18 18 C 1.39996 * 120.09548 * 359.97438 * 17 16 15 19 19 C 1.37739 * 119.97153 * 179.97438 * 18 17 16 20 20 C 1.38870 * 120.17494 * 359.97321 * 19 18 17 21 21 O 1.35834 * 119.89870 * 180.02562 * 20 19 18 22 22 C 1.39446 * 120.20032 * 0.02562 * 20 19 18 23 23 O 1.36001 * 119.98615 * 179.97438 * 22 20 19 24 24 C 1.42904 * 116.99520 * 180.02562 * 23 22 20 25 25 C 1.53004 * 109.46509 * 180.02562 * 24 23 22 26 26 C 1.38087 * 120.02514 * 359.74289 * 22 20 19 27 27 H 1.08994 * 109.47271 * 60.00169 * 1 2 3 28 28 H 1.09002 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47023 * 300.00233 * 1 2 3 30 30 H 1.08995 * 109.47107 * 240.00173 * 2 1 3 31 31 H 1.09001 * 109.46942 * 119.99692 * 2 1 3 32 32 H 1.09002 * 109.47393 * 59.99993 * 3 2 1 33 33 H 1.09007 * 109.46712 * 299.99993 * 3 2 1 34 34 H 0.96997 * 120.00475 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.00082 * 359.71742 * 15 13 4 36 36 H 1.08000 * 120.00320 * 359.97438 * 16 15 13 37 37 H 1.07996 * 120.01408 * 359.95583 * 18 17 16 38 38 H 1.07994 * 119.91132 * 180.02562 * 19 18 17 39 39 H 0.96694 * 114.00209 * 90.00102 * 21 20 19 40 40 H 1.09001 * 109.47118 * 300.00043 * 24 23 22 41 41 H 1.08997 * 109.47112 * 60.00306 * 24 23 22 42 42 H 1.09001 * 109.47416 * 299.99800 * 25 24 23 43 43 H 1.08997 * 109.47233 * 60.00320 * 25 24 23 44 44 H 1.09002 * 109.46900 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.08628 * 180.24859 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1892 1.5525 1.1782 6 1 5.1257 1.0308 1.3097 7 6 3.6790 2.3360 2.2080 8 7 2.8059 3.2808 1.9436 9 14 4.2357 2.0445 3.9671 10 1 5.4277 2.8824 4.2544 11 1 3.1389 2.4077 4.9000 12 1 4.5832 0.6117 4.1454 13 6 4.1784 1.3343 -1.1631 14 8 5.3962 1.3339 -1.1636 15 6 3.4688 1.2262 -2.3861 16 6 4.1441 1.1232 -3.5521 17 6 3.4089 1.0118 -4.8196 18 6 2.0089 1.0117 -4.8214 19 6 1.3223 0.9077 -6.0109 20 6 2.0152 0.8034 -7.2099 21 8 1.3324 0.7016 -8.3798 22 6 3.4096 0.8028 -7.2165 23 8 4.0837 0.6999 -8.3932 24 6 5.5111 0.7052 -8.3257 25 6 6.0888 0.5826 -9.7372 26 6 4.1063 0.9115 -6.0292 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 2.4498 3.8270 2.6617 35 1 2.3888 1.2262 -2.3856 36 1 5.2241 1.1236 -3.5526 37 1 1.4675 1.0928 -3.8905 38 1 0.2424 0.9081 -6.0112 39 1 1.1347 1.5521 -8.7951 40 1 5.8500 1.6378 -7.8745 41 1 5.8493 -0.1354 -7.7199 42 1 5.7499 -0.3498 -10.1887 43 1 5.7506 1.4235 -10.3425 44 1 7.1776 0.5871 -9.6857 45 1 5.1862 0.9151 -6.0336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179445009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:36 Heat of formation + Delta-G solvation = -93.812919 kcal Electronic energy + Delta-G solvation = -26270.992917 eV Core-core repulsion = 22446.860591 eV Total energy + Delta-G solvation = -3824.132327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44729 -40.68319 -38.97031 -37.96419 -37.17837 -34.78255 -34.02869 -33.05823 -32.66678 -31.31784 -29.62356 -27.73850 -26.61540 -25.10585 -24.64211 -22.77619 -22.53007 -22.11307 -19.97726 -19.60732 -18.91989 -18.43768 -17.95254 -17.31435 -17.18175 -16.84109 -16.29998 -16.06585 -15.60745 -15.49055 -15.37620 -15.04708 -14.77650 -14.54534 -14.11717 -14.10095 -13.64349 -13.44421 -13.40754 -13.23665 -13.15592 -13.02087 -12.95009 -12.68581 -12.49292 -12.23403 -12.20064 -12.07108 -11.98624 -11.80523 -11.55948 -11.49149 -10.97928 -10.84413 -10.46344 -9.65785 -9.48272 -8.91421 -8.39645 -6.05038 -0.54050 0.34288 0.94143 1.39877 1.40360 1.53273 2.15371 2.26668 2.45169 2.75418 3.08675 3.11412 3.23426 3.66386 3.76656 4.02362 4.02890 4.07786 4.15322 4.22211 4.27967 4.33985 4.36348 4.43765 4.52538 4.61085 4.76419 4.79259 4.87064 4.92474 4.98779 4.99950 5.09399 5.15333 5.21119 5.25844 5.30349 5.37412 5.39274 5.50270 5.59738 5.63853 5.66048 6.17766 6.25173 6.52222 6.87732 7.14458 7.41612 8.04767 8.61332 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.002796 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.382468 B =10011.009077 C =11118.397416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.098 3.902 4 N -0.437 5.437 5 C -0.342 4.342 6 H 0.064 0.936 7 C 0.006 3.994 8 N -0.879 5.879 9 Si 0.982 3.018 10 H -0.277 1.277 11 H -0.263 1.263 12 H -0.268 1.268 13 C 0.458 3.542 14 O -0.646 6.646 15 C -0.181 4.181 16 C -0.050 4.050 17 C -0.039 4.039 18 C -0.128 4.128 19 C -0.100 4.100 20 C 0.072 3.928 21 O -0.495 6.495 22 C 0.093 3.907 23 O -0.319 6.319 24 C 0.040 3.960 25 C -0.146 4.146 26 C -0.182 4.182 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.278 0.722 35 H 0.147 0.853 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.405 0.595 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 -3.583 -18.208 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.025 4.025 4 N -0.152 5.152 5 C -0.471 4.471 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.516 5.516 9 Si 0.805 3.195 10 H -0.203 1.203 11 H -0.187 1.187 12 H -0.192 1.192 13 C 0.252 3.748 14 O -0.537 6.537 15 C -0.201 4.201 16 C -0.071 4.071 17 C -0.039 4.039 18 C -0.146 4.146 19 C -0.118 4.118 20 C 0.027 3.973 21 O -0.307 6.307 22 C 0.047 3.953 23 O -0.234 6.234 24 C -0.035 4.035 25 C -0.203 4.203 26 C -0.201 4.201 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.134 0.866 37 H 0.162 0.838 38 H 0.182 0.818 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.756 -4.031 -18.140 19.453 hybrid contribution 0.858 0.629 1.157 1.572 sum -4.898 -3.402 -16.983 17.999 Atomic orbital electron populations 1.21635 0.92951 1.02488 1.02405 1.21898 0.97679 0.96317 1.01198 1.21868 0.79690 0.97003 1.03908 1.43768 1.06362 1.60250 1.04813 1.19421 1.07503 1.28893 0.91268 0.91773 1.26137 0.96936 0.92795 1.03938 1.69929 1.30578 1.16389 1.34699 0.85127 0.78322 0.78933 0.77131 1.20290 1.18703 1.19230 1.17837 0.87601 0.83627 0.85688 1.90588 1.16018 1.58967 1.88144 1.22258 1.01323 1.04334 0.92154 1.22201 0.99409 0.94681 0.90839 1.18848 0.93717 0.99789 0.91594 1.21437 0.92602 1.01276 0.99276 1.21384 1.01729 0.98754 0.89958 1.18061 0.86392 1.05687 0.87202 1.84780 1.75216 1.36087 1.34659 1.19396 0.91743 0.98772 0.85359 1.86119 1.21544 1.88169 1.27543 1.23100 0.77291 1.02070 1.01004 1.21779 1.01713 1.03288 0.93489 1.21422 1.00894 1.07018 0.90790 0.91170 0.91197 0.93050 0.92409 0.93750 0.88840 0.91529 0.91259 0.83553 0.86634 0.83758 0.81769 0.73652 0.91346 0.91693 0.91756 0.91439 0.88395 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.13 -4.64 6.10 30.59 0.19 -4.45 16 3 C 0.10 4.22 4.56 86.38 0.39 4.61 16 4 N -0.44 -22.97 2.54 -645.40 -1.64 -24.62 16 5 C -0.34 -19.74 8.96 84.13 0.75 -18.99 16 6 H 0.06 3.98 7.71 -2.91 -0.02 3.95 16 7 C 0.01 0.30 4.94 84.97 0.42 0.72 16 8 N -0.88 -46.72 11.32 21.69 0.25 -46.48 16 9 Si 0.98 41.99 29.60 68.60 2.03 44.02 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.46 23.91 7.37 85.12 0.63 24.53 16 14 O -0.65 -39.03 15.94 -4.60 -0.07 -39.10 16 15 C -0.18 -7.17 7.98 22.44 0.18 -6.99 16 16 C -0.05 -1.77 9.41 23.84 0.22 -1.55 16 17 C -0.04 -1.12 5.87 -20.15 -0.12 -1.24 16 18 C -0.13 -3.10 9.40 22.58 0.21 -2.89 16 19 C -0.10 -2.07 9.96 22.30 0.22 -1.85 16 20 C 0.07 1.64 6.73 22.71 0.15 1.80 16 21 O -0.50 -9.81 13.27 -77.66 -1.03 -10.85 16 22 C 0.09 2.30 6.69 22.53 0.15 2.46 16 23 O -0.32 -7.40 9.91 -79.53 -0.79 -8.18 16 24 C 0.04 0.69 5.46 71.98 0.39 1.09 16 25 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 26 C -0.18 -4.71 8.78 22.66 0.20 -4.51 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.95 7.55 -2.39 -0.02 1.93 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 4.44 5.36 -2.39 -0.01 4.42 16 33 H 0.07 2.56 6.39 -2.38 -0.02 2.55 16 34 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.15 4.86 4.00 -2.91 -0.01 4.85 16 36 H 0.12 4.44 7.45 -2.91 -0.02 4.42 16 37 H 0.14 3.16 6.15 -2.91 -0.02 3.14 16 38 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.41 4.19 9.06 -74.06 -0.67 3.52 16 40 H 0.07 1.10 7.65 -2.39 -0.02 1.08 16 41 H 0.06 1.09 7.67 -2.39 -0.02 1.08 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.14 3.31 6.28 -2.91 -0.02 3.29 16 Total: -1.00 -74.42 374.94 4.54 -69.88 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.35 Total: 26.53 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.45 Total: -11.20 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.40 Total: -71.09 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -1.89 Total: -58.13 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -74.42 4.54 -69.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179445009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.934 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds