Wall clock time and date at job start Tue Mar 31 2020 11:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 N 1.46503 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.36708 * 120.00060 * 265.47723 * 4 3 2 6 6 H 1.08006 * 120.00274 * 142.94350 * 5 4 3 7 7 C 1.39127 * 120.00378 * 322.94106 * 5 4 3 8 8 N 1.31322 * 120.00250 * 156.61649 * 7 5 4 9 9 Si 1.86797 * 119.99769 * 336.62728 * 7 5 4 10 10 H 1.48501 * 109.47516 * 95.71323 * 9 7 5 11 11 H 1.48497 * 109.47314 * 215.71092 * 9 7 5 12 12 H 1.48505 * 109.47075 * 335.71426 * 9 7 5 13 13 C 1.34771 * 119.99595 * 85.47714 * 4 3 2 14 14 O 1.21769 * 119.99794 * 179.97438 * 13 4 3 15 15 C 1.46229 * 120.00508 * 0.02562 * 13 4 3 16 16 C 1.34973 * 120.00197 * 179.97438 * 15 13 4 17 17 C 1.47166 * 120.00005 * 179.97438 * 16 15 13 18 18 C 1.39817 * 120.11971 * 359.71586 * 17 16 15 19 19 C 1.38428 * 119.87551 * 180.27482 * 18 17 16 20 20 O 1.35901 * 119.94028 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00462 * 180.02562 * 20 19 18 22 22 C 1.38787 * 120.12074 * 0.02562 * 19 18 17 23 23 C 1.38793 * 120.25050 * 359.97438 * 22 19 18 24 24 O 1.35904 * 119.94439 * 179.97438 * 23 22 19 25 25 C 1.42902 * 116.99867 * 0.02679 * 24 23 22 26 26 C 1.38434 * 120.11548 * 0.02562 * 23 22 19 27 27 H 1.09001 * 109.46959 * 299.99880 * 1 2 3 28 28 H 1.09003 * 109.47257 * 59.99675 * 1 2 3 29 29 H 1.09006 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47351 * 240.00756 * 2 1 3 31 31 H 1.08996 * 109.47851 * 120.00058 * 2 1 3 32 32 H 1.08997 * 109.46696 * 60.00293 * 3 2 1 33 33 H 1.09003 * 109.47368 * 300.00257 * 3 2 1 34 34 H 0.96996 * 119.99650 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.99890 * 359.97438 * 15 13 4 36 36 H 1.07999 * 119.99913 * 359.97438 * 16 15 13 37 37 H 1.07997 * 120.06295 * 0.26439 * 18 17 16 38 38 H 1.09004 * 109.47193 * 300.00503 * 21 20 19 39 39 H 1.09001 * 109.46504 * 59.99918 * 21 20 19 40 40 H 1.08997 * 109.47204 * 180.02562 * 21 20 19 41 41 H 1.08007 * 119.87467 * 180.02562 * 22 19 18 42 42 H 1.08996 * 109.47309 * 59.99361 * 25 24 23 43 43 H 1.08995 * 109.47072 * 180.02562 * 25 24 23 44 44 H 1.09008 * 109.46959 * 299.99984 * 25 24 23 45 45 H 1.08003 * 120.05841 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1890 1.5358 1.1793 6 1 5.1056 0.9813 1.3175 7 6 3.7047 2.3449 2.2023 8 7 4.0535 2.1100 3.4463 9 14 2.5578 3.7651 1.8061 10 1 1.1496 3.3290 1.9851 11 1 2.8436 4.9015 2.7183 12 1 2.7683 4.1939 0.4000 13 6 4.1783 1.3507 -1.1645 14 8 5.3960 1.3512 -1.1651 15 6 3.4466 1.2516 -2.4267 16 6 4.1210 1.1601 -3.5923 17 6 3.3846 1.0598 -4.8625 18 6 1.9864 1.0530 -4.8643 19 6 1.2989 0.9527 -6.0616 20 8 -0.0601 0.9455 -6.0648 21 6 -0.7054 0.8389 -7.3354 22 6 1.9949 0.8585 -7.2586 23 6 3.3828 0.8647 -7.2628 24 8 4.0581 0.7715 -8.4385 25 6 3.2755 0.6708 -9.6299 26 6 4.0806 0.9646 -6.0713 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9565 -0.8900 34 1 3.7161 2.6743 4.1594 35 1 2.3666 1.2516 -2.4262 36 1 5.2010 1.1606 -3.5928 37 1 1.4439 1.1258 -3.9334 38 1 -0.4154 1.6824 -7.9621 39 1 -0.4063 -0.0917 -7.8177 40 1 -1.7863 0.8452 -7.1956 41 1 1.4545 0.7808 -8.1905 42 1 2.6427 1.5532 -9.7247 43 1 3.9363 0.6026 -10.4940 44 1 2.6504 -0.2208 -9.5797 45 1 5.1606 0.9689 -6.0756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:55 Heat of formation + Delta-G solvation = -55.791471 kcal Electronic energy + Delta-G solvation = -26553.607701 eV Core-core repulsion = 22731.124108 eV Total energy + Delta-G solvation = -3822.483593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65434 -39.01471 -38.91691 -37.11618 -35.51184 -33.28757 -32.68338 -31.58796 -30.52305 -29.36716 -28.18678 -26.82401 -26.06920 -25.35929 -23.17363 -22.44800 -21.38219 -20.59210 -18.75015 -18.09030 -17.12999 -17.01752 -16.48139 -16.18876 -16.17057 -15.90645 -15.72688 -15.32348 -14.94863 -14.39337 -13.95236 -13.86612 -13.81467 -13.30218 -13.08018 -12.98864 -12.58778 -12.49646 -12.40860 -12.15149 -11.91112 -11.85765 -11.70879 -11.49477 -11.40504 -11.22626 -11.10259 -10.90606 -10.81504 -10.54458 -10.04966 -9.90153 -9.59550 -9.10989 -8.54318 -8.13508 -8.11139 -7.76231 -6.48133 -3.95587 0.68202 1.39680 2.28700 2.99343 3.02542 3.04813 3.21152 3.26764 3.73821 4.10005 4.28860 4.38886 4.59513 4.66506 4.72538 4.80996 4.83378 4.90497 4.96993 5.02780 5.12552 5.15808 5.22175 5.30628 5.34142 5.40540 5.52013 5.63607 5.70812 5.82412 5.94338 6.09119 6.10342 6.12305 6.21118 6.24005 6.32758 6.50168 6.57663 6.72931 6.81681 6.85657 7.00137 7.31299 7.50551 8.26154 8.49176 8.93817 9.27050 9.78630 10.63150 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.003230 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.167039 B = 8666.816118 C = 9644.119013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.088 3.912 4 N -0.449 5.449 5 C -0.310 4.310 6 H 0.108 0.892 7 C 0.062 3.938 8 N -0.852 5.852 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.478 3.522 14 O -0.571 6.571 15 C -0.151 4.151 16 C -0.085 4.085 17 C 0.032 3.968 18 C -0.182 4.182 19 C 0.165 3.835 20 O -0.313 6.313 21 C 0.028 3.972 22 C -0.302 4.302 23 C 0.163 3.837 24 O -0.314 6.314 25 C 0.028 3.972 26 C -0.175 4.175 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.276 0.724 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 -2.751 -22.819 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.036 4.036 4 N -0.167 5.167 5 C -0.437 4.437 6 H 0.126 0.874 7 C -0.146 4.146 8 N -0.487 5.487 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.269 3.731 14 O -0.455 6.455 15 C -0.172 4.172 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.200 4.200 19 C 0.120 3.880 20 O -0.226 6.226 21 C -0.067 4.067 22 C -0.322 4.322 23 C 0.118 3.882 24 O -0.227 6.227 25 C -0.067 4.067 26 C -0.194 4.194 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.770 -2.683 -22.423 25.020 hybrid contribution -1.080 0.779 -0.469 1.412 sum -11.850 -1.904 -22.893 25.848 Atomic orbital electron populations 1.21733 0.96048 1.01389 1.01559 1.21922 0.95052 0.97498 1.03115 1.21983 0.82965 0.96991 1.01656 1.43670 1.03890 1.63160 1.06020 1.19085 1.09860 1.26918 0.87844 0.87441 1.25411 0.97228 0.97264 0.94659 1.69735 1.43162 1.36821 0.99003 0.87010 0.80184 0.83088 0.79817 1.19956 1.21138 1.18511 1.18062 0.87648 0.83899 0.83449 1.90685 1.13355 1.54687 1.86772 1.23510 1.00119 0.99746 0.93871 1.22078 1.00206 0.98849 0.89453 1.18598 0.91517 0.94057 0.92692 1.20576 0.93042 1.09814 0.96613 1.18547 0.82049 0.94169 0.93281 1.86110 1.16535 1.88132 1.31847 1.23041 0.98136 1.01016 0.84535 1.21226 0.94028 1.18638 0.98271 1.18560 0.89605 0.94298 0.85786 1.86101 1.35518 1.88075 1.13026 1.23038 0.97046 1.01059 0.85590 1.20485 1.00556 1.09552 0.88772 0.92758 0.92982 0.92775 0.91992 0.90634 0.90707 0.91889 0.91379 0.86057 0.84422 0.84552 0.92809 0.92783 0.88166 0.85088 0.92789 0.88193 0.92785 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.69 16 2 C -0.14 -2.37 6.16 -26.73 -0.16 -2.53 16 3 C 0.09 1.76 3.69 -4.04 -0.01 1.75 16 4 N -0.45 -11.00 2.18 -116.46 -0.25 -11.25 16 5 C -0.31 -8.77 9.35 -15.05 -0.14 -8.91 16 6 H 0.11 3.42 7.90 -52.48 -0.41 3.00 16 7 C 0.06 1.69 5.26 -17.44 -0.09 1.60 16 8 N -0.85 -24.30 13.95 55.51 0.77 -23.52 16 9 Si 0.87 20.45 25.09 -169.99 -4.27 16.18 16 10 H -0.27 -5.90 6.68 56.52 0.38 -5.52 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.48 11.51 7.53 -13.05 -0.10 11.41 16 14 O -0.57 -15.87 16.09 5.13 0.08 -15.78 16 15 C -0.15 -2.83 8.20 -37.53 -0.31 -3.14 16 16 C -0.09 -1.44 9.46 -37.12 -0.35 -1.80 16 17 C 0.03 0.47 5.87 -105.09 -0.62 -0.15 16 18 C -0.18 -2.54 9.35 -38.92 -0.36 -2.90 16 19 C 0.16 2.09 6.68 -39.31 -0.26 1.82 16 20 O -0.31 -3.59 10.49 -19.43 -0.20 -3.79 16 21 C 0.03 0.19 9.81 101.05 0.99 1.18 16 22 C -0.30 -3.39 8.03 -39.17 -0.31 -3.71 16 23 C 0.16 2.03 6.68 -39.30 -0.26 1.76 16 24 O -0.31 -3.51 10.49 -19.44 -0.20 -3.71 16 25 C 0.03 0.19 9.81 101.05 0.99 1.18 16 26 C -0.17 -2.38 9.73 -38.92 -0.38 -2.76 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.59 3.52 -51.93 -0.18 1.41 16 33 H 0.06 1.10 6.36 -51.93 -0.33 0.77 16 34 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.12 1.95 4.23 -52.49 -0.22 1.73 16 36 H 0.14 2.42 7.52 -52.49 -0.39 2.03 16 37 H 0.14 1.84 6.16 -52.49 -0.32 1.51 16 38 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 39 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.13 1.10 4.48 -52.48 -0.24 0.86 16 42 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.31 7.65 -51.92 -0.40 -0.09 16 45 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -33.30 368.40 -5.75 -39.05 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.21 Total: 4.16 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.02 Total: -6.88 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.52 Total: -34.78 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.33 Total: -23.29 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.27 Total: 16.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.30 -5.75 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.745 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds