Wall clock time and date at job start Tue Mar 31 2020 11:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 N 1.46503 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.36708 * 120.00060 * 265.47723 * 4 3 2 6 6 H 1.08006 * 120.00274 * 142.94350 * 5 4 3 7 7 C 1.39127 * 120.00378 * 322.94106 * 5 4 3 8 8 N 1.31322 * 120.00250 * 156.61649 * 7 5 4 9 9 Si 1.86797 * 119.99769 * 336.62728 * 7 5 4 10 10 H 1.48501 * 109.47516 * 95.71323 * 9 7 5 11 11 H 1.48497 * 109.47314 * 215.71092 * 9 7 5 12 12 H 1.48505 * 109.47075 * 335.71426 * 9 7 5 13 13 C 1.34771 * 119.99595 * 85.47714 * 4 3 2 14 14 O 1.21769 * 119.99794 * 179.97438 * 13 4 3 15 15 C 1.46229 * 120.00508 * 0.02562 * 13 4 3 16 16 C 1.34973 * 120.00197 * 179.97438 * 15 13 4 17 17 C 1.47166 * 120.00005 * 179.97438 * 16 15 13 18 18 C 1.39817 * 120.11971 * 359.71586 * 17 16 15 19 19 C 1.38428 * 119.87551 * 180.27482 * 18 17 16 20 20 O 1.35901 * 119.94028 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00462 * 180.02562 * 20 19 18 22 22 C 1.38787 * 120.12074 * 0.02562 * 19 18 17 23 23 C 1.38793 * 120.25050 * 359.97438 * 22 19 18 24 24 O 1.35904 * 119.94439 * 179.97438 * 23 22 19 25 25 C 1.42902 * 116.99867 * 0.02679 * 24 23 22 26 26 C 1.38434 * 120.11548 * 0.02562 * 23 22 19 27 27 H 1.09001 * 109.46959 * 299.99880 * 1 2 3 28 28 H 1.09003 * 109.47257 * 59.99675 * 1 2 3 29 29 H 1.09006 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47351 * 240.00756 * 2 1 3 31 31 H 1.08996 * 109.47851 * 120.00058 * 2 1 3 32 32 H 1.08997 * 109.46696 * 60.00293 * 3 2 1 33 33 H 1.09003 * 109.47368 * 300.00257 * 3 2 1 34 34 H 0.96996 * 119.99650 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.99890 * 359.97438 * 15 13 4 36 36 H 1.07999 * 119.99913 * 359.97438 * 16 15 13 37 37 H 1.07997 * 120.06295 * 0.26439 * 18 17 16 38 38 H 1.09004 * 109.47193 * 300.00503 * 21 20 19 39 39 H 1.09001 * 109.46504 * 59.99918 * 21 20 19 40 40 H 1.08997 * 109.47204 * 180.02562 * 21 20 19 41 41 H 1.08007 * 119.87467 * 180.02562 * 22 19 18 42 42 H 1.08996 * 109.47309 * 59.99361 * 25 24 23 43 43 H 1.08995 * 109.47072 * 180.02562 * 25 24 23 44 44 H 1.09008 * 109.46959 * 299.99984 * 25 24 23 45 45 H 1.08003 * 120.05841 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1890 1.5358 1.1793 6 1 5.1056 0.9813 1.3175 7 6 3.7047 2.3449 2.2023 8 7 4.0535 2.1100 3.4463 9 14 2.5578 3.7651 1.8061 10 1 1.1496 3.3290 1.9851 11 1 2.8436 4.9015 2.7183 12 1 2.7683 4.1939 0.4000 13 6 4.1783 1.3507 -1.1645 14 8 5.3960 1.3512 -1.1651 15 6 3.4466 1.2516 -2.4267 16 6 4.1210 1.1601 -3.5923 17 6 3.3846 1.0598 -4.8625 18 6 1.9864 1.0530 -4.8643 19 6 1.2989 0.9527 -6.0616 20 8 -0.0601 0.9455 -6.0648 21 6 -0.7054 0.8389 -7.3354 22 6 1.9949 0.8585 -7.2586 23 6 3.3828 0.8647 -7.2628 24 8 4.0581 0.7715 -8.4385 25 6 3.2755 0.6708 -9.6299 26 6 4.0806 0.9646 -6.0713 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9565 -0.8900 34 1 3.7161 2.6743 4.1594 35 1 2.3666 1.2516 -2.4262 36 1 5.2010 1.1606 -3.5928 37 1 1.4439 1.1258 -3.9334 38 1 -0.4154 1.6824 -7.9621 39 1 -0.4063 -0.0917 -7.8177 40 1 -1.7863 0.8452 -7.1956 41 1 1.4545 0.7808 -8.1905 42 1 2.6427 1.5532 -9.7247 43 1 3.9363 0.6026 -10.4940 44 1 2.6504 -0.2208 -9.5797 45 1 5.1606 0.9689 -6.0756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060541863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:54 Heat of formation + Delta-G solvation = -77.821721 kcal Electronic energy + Delta-G solvation = -26554.563004 eV Core-core repulsion = 22731.124108 eV Total energy + Delta-G solvation = -3823.438896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55258 -40.72631 -39.79051 -38.14636 -37.30190 -34.88220 -34.17732 -33.34346 -31.40120 -30.53143 -28.87484 -27.70209 -27.45815 -26.98270 -24.53525 -23.44207 -22.76486 -21.84116 -20.08228 -19.34339 -18.96005 -18.06770 -17.94337 -17.51183 -17.10851 -16.91101 -16.63652 -16.38341 -15.97081 -15.65755 -15.64504 -15.44233 -15.09395 -14.71316 -14.40163 -14.23417 -14.02321 -13.76879 -13.49464 -13.32215 -13.20969 -12.99583 -12.78014 -12.50015 -12.45949 -12.35344 -12.22635 -12.15147 -12.06626 -12.05916 -11.87825 -11.50532 -11.07148 -10.68389 -10.48806 -9.77289 -9.26303 -9.06716 -8.57598 -6.13493 -0.50626 0.42570 0.97984 1.18338 1.32851 1.42500 2.14145 2.22288 2.31833 2.36249 2.67230 2.79841 3.00669 3.60112 3.84633 3.91573 3.98586 4.01492 4.10993 4.17218 4.25424 4.31914 4.37163 4.38110 4.40992 4.41296 4.43470 4.57198 4.61225 4.66444 4.74055 4.75841 4.98876 5.05442 5.13222 5.16734 5.18932 5.26480 5.29671 5.45408 5.52637 5.58932 5.61573 6.01350 6.18950 6.48428 6.53761 6.89721 7.24977 7.84253 8.59413 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.003230 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.167039 B = 8666.816118 C = 9644.119013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.082 3.918 4 N -0.461 5.461 5 C -0.336 4.336 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.899 5.899 9 Si 0.940 3.060 10 H -0.234 1.234 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.475 3.525 14 O -0.625 6.625 15 C -0.176 4.176 16 C -0.047 4.047 17 C 0.011 3.989 18 C -0.187 4.187 19 C 0.163 3.837 20 O -0.327 6.327 21 C 0.015 3.985 22 C -0.285 4.285 23 C 0.160 3.840 24 O -0.330 6.330 25 C 0.015 3.985 26 C -0.184 4.184 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.283 0.717 35 H 0.154 0.846 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.164 0.836 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.067 0.933 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.575 -2.149 -26.993 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.040 4.040 4 N -0.179 5.179 5 C -0.464 4.464 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.536 5.536 9 Si 0.763 3.237 10 H -0.159 1.159 11 H -0.210 1.210 12 H -0.185 1.185 13 C 0.268 3.732 14 O -0.513 6.513 15 C -0.196 4.196 16 C -0.068 4.068 17 C 0.011 3.989 18 C -0.206 4.206 19 C 0.117 3.883 20 O -0.240 6.240 21 C -0.079 4.079 22 C -0.304 4.304 23 C 0.114 3.886 24 O -0.244 6.244 25 C -0.079 4.079 26 C -0.203 4.203 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.171 0.829 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.181 0.819 42 H 0.086 0.914 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.955 -2.103 -26.619 30.604 hybrid contribution 0.270 0.469 0.447 0.702 sum -14.685 -1.634 -26.171 30.054 Atomic orbital electron populations 1.21703 0.92609 1.02995 1.02694 1.21858 0.97887 0.95335 1.01992 1.22242 0.79981 0.99158 1.02658 1.43733 1.05778 1.63645 1.04780 1.18630 1.09258 1.28153 0.90325 0.93665 1.26149 0.99316 0.99192 0.93889 1.69832 1.45429 1.38166 1.00136 0.85948 0.79842 0.78674 0.79257 1.15866 1.20994 1.18502 1.18940 0.87349 0.81755 0.85114 1.90637 1.16004 1.56718 1.87892 1.23174 1.01158 1.04048 0.91217 1.22193 0.99769 0.94380 0.90409 1.18354 0.92047 0.96899 0.91623 1.20664 0.92605 1.09585 0.97710 1.18578 0.82975 0.93693 0.93087 1.86101 1.15596 1.87822 1.34496 1.23412 0.99072 1.02257 0.83158 1.21539 0.93560 1.16051 0.99259 1.18590 0.90110 0.93873 0.86006 1.86096 1.36817 1.87774 1.13663 1.23412 0.97830 1.02319 0.84319 1.20586 1.00847 1.09526 0.89315 0.92851 0.90563 0.91031 0.91323 0.93704 0.91686 0.88492 0.90746 0.82862 0.85895 0.84105 0.91488 0.91444 0.86123 0.81880 0.91423 0.86157 0.91409 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.13 -4.45 6.16 30.60 0.19 -4.26 16 3 C 0.08 3.21 3.69 86.38 0.32 3.53 16 4 N -0.46 -23.49 2.18 -640.55 -1.40 -24.88 16 5 C -0.34 -20.41 9.35 84.15 0.79 -19.62 16 6 H 0.05 3.21 7.90 -2.91 -0.02 3.19 16 7 C 0.02 1.04 5.26 84.98 0.45 1.49 16 8 N -0.90 -53.97 13.95 21.69 0.30 -53.67 16 9 Si 0.94 42.51 25.09 68.60 1.72 44.23 16 10 H -0.23 -9.12 6.68 99.48 0.66 -8.46 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 13 C 0.48 23.90 7.53 86.32 0.65 24.55 16 14 O -0.62 -37.21 16.09 -4.57 -0.07 -37.29 16 15 C -0.18 -6.53 8.20 23.60 0.19 -6.34 16 16 C -0.05 -1.59 9.46 23.87 0.23 -1.36 16 17 C 0.01 0.31 5.87 -20.17 -0.12 0.19 16 18 C -0.19 -4.73 9.35 22.70 0.21 -4.51 16 19 C 0.16 3.52 6.68 22.45 0.15 3.67 16 20 O -0.33 -6.14 10.49 -92.44 -0.97 -7.11 16 21 C 0.02 0.14 9.81 113.37 1.11 1.25 16 22 C -0.28 -5.25 8.03 22.53 0.18 -5.07 16 23 C 0.16 3.53 6.68 22.45 0.15 3.68 16 24 O -0.33 -6.40 10.49 -92.47 -0.97 -7.37 16 25 C 0.02 0.14 9.81 113.37 1.11 1.25 16 26 C -0.18 -4.75 9.73 22.70 0.22 -4.53 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 30 H 0.07 2.19 7.71 -2.38 -0.02 2.18 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 2.67 3.52 -2.39 -0.01 2.66 16 33 H 0.10 3.12 6.36 -2.39 -0.02 3.11 16 34 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.15 4.61 4.23 -2.91 -0.01 4.60 16 36 H 0.12 4.51 7.52 -2.91 -0.02 4.48 16 37 H 0.14 3.35 6.16 -2.91 -0.02 3.33 16 38 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 39 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.16 1.85 4.48 -2.91 -0.01 1.84 16 42 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 43 H 0.12 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.46 7.65 -2.38 -0.02 0.44 16 45 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -80.05 368.40 6.12 -73.93 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.96 Total: 21.00 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 6.54 Total: -8.84 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.09 Total: -78.55 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -2.01 Total: -51.77 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.72 Total: 44.23 kcal Total: -80.05 6.12 -73.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.892 kcal (2) G-P(sol) polarization free energy of solvation -80.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds