Wall clock time and date at job start Tue Mar 31 2020 12:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 N 1.46497 * 109.47550 * 180.02562 * 3 2 1 5 5 C 1.37089 * 119.99980 * 264.77115 * 4 3 2 6 6 H 1.08005 * 120.00054 * 138.85593 * 5 4 3 7 7 C 1.38950 * 120.00184 * 318.85310 * 5 4 3 8 8 N 1.31417 * 119.99881 * 341.82433 * 7 5 4 9 9 Si 1.86803 * 120.00351 * 161.82648 * 7 5 4 10 10 H 1.48499 * 109.46856 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47256 * 120.00050 * 9 7 5 12 12 H 1.48500 * 109.46834 * 240.00015 * 9 7 5 13 13 C 1.34772 * 119.99800 * 84.76730 * 4 3 2 14 14 O 1.21300 * 119.99963 * 180.02562 * 13 4 3 15 15 C 1.50703 * 120.00400 * 0.02562 * 13 4 3 16 16 O 1.42904 * 109.47280 * 180.02562 * 15 13 4 17 17 C 1.35668 * 116.99689 * 179.97438 * 16 15 13 18 18 C 1.39078 * 119.88210 * 179.97438 * 17 16 15 19 19 C 1.37117 * 120.11555 * 180.02562 * 18 17 16 20 20 C 1.40036 * 119.88076 * 359.97438 * 19 18 17 21 21 C 1.46862 * 120.11154 * 180.02562 * 20 19 18 22 22 O 1.21293 * 120.00174 * 0.02562 * 21 20 19 23 23 C 1.50698 * 119.99969 * 180.02562 * 21 20 19 24 24 C 1.53003 * 109.47195 * 180.02562 * 23 21 20 25 25 C 1.40035 * 119.77430 * 0.28049 * 20 19 18 26 26 C 1.37122 * 119.88323 * 359.46325 * 25 20 19 27 27 H 1.09003 * 109.47307 * 299.99819 * 1 2 3 28 28 H 1.08997 * 109.47578 * 60.00209 * 1 2 3 29 29 H 1.09002 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47307 * 240.00181 * 2 1 3 31 31 H 1.08993 * 109.47096 * 119.99870 * 2 1 3 32 32 H 1.08996 * 109.47178 * 59.99625 * 3 2 1 33 33 H 1.09008 * 109.47163 * 300.00394 * 3 2 1 34 34 H 0.96997 * 120.00272 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47415 * 59.99706 * 15 13 4 36 36 H 1.09006 * 109.46898 * 299.99961 * 15 13 4 37 37 H 1.08003 * 119.94057 * 0.02562 * 18 17 16 38 38 H 1.07996 * 120.05871 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.47120 * 59.99855 * 23 21 20 40 40 H 1.09005 * 109.46852 * 300.00164 * 23 21 20 41 41 H 1.09002 * 109.46896 * 60.00048 * 24 23 21 42 42 H 1.09002 * 109.46959 * 179.97438 * 24 23 21 43 43 H 1.08998 * 109.46849 * 299.99755 * 24 23 21 44 44 H 1.07999 * 120.05994 * 179.69898 * 25 20 19 45 45 H 1.07995 * 119.94186 * 180.25673 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5506 1.1814 6 1 5.0710 0.9484 1.3520 7 6 3.7539 2.4351 2.1599 8 7 2.9284 3.4079 1.8450 9 14 4.3399 2.2414 3.9231 10 1 5.2567 1.0768 4.0148 11 1 5.0575 3.4714 4.3442 12 1 3.1707 2.0216 4.8119 13 6 4.1783 1.3363 -1.1632 14 8 5.3913 1.3360 -1.1637 15 6 3.4243 1.2180 -2.4627 16 8 4.3525 1.1185 -3.5447 17 6 3.8334 1.0042 -4.7929 18 6 4.6823 0.9038 -5.8899 19 6 4.1628 0.7886 -7.1536 20 6 2.7748 0.7716 -7.3384 21 6 2.2129 0.6478 -8.6897 22 8 2.9514 0.5597 -9.6479 23 6 0.7189 0.6303 -8.8857 24 6 0.4016 0.4930 -10.3762 25 6 1.9245 0.8783 -6.2310 26 6 2.4542 0.9878 -4.9709 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.6236 4.0255 2.5280 35 1 2.7978 2.0993 -2.6008 36 1 2.7974 0.3266 -2.4391 37 1 5.7527 0.9166 -5.7462 38 1 4.8229 0.7111 -8.0049 39 1 0.2918 1.5589 -8.5069 40 1 0.2913 -0.2137 -8.3443 41 1 0.8286 -0.4358 -10.7545 42 1 -0.6791 0.4799 -10.5179 43 1 0.8292 1.3367 -10.9178 44 1 0.8533 0.8706 -6.3687 45 1 1.7992 1.0660 -4.1158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:32 Heat of formation + Delta-G solvation = -108.314348 kcal Electronic energy + Delta-G solvation = -26227.945072 eV Core-core repulsion = 22403.183916 eV Total energy + Delta-G solvation = -3824.761156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60258 -40.72982 -39.96249 -38.06677 -37.09170 -34.61164 -33.90880 -33.05554 -32.22636 -31.50107 -29.79872 -27.44638 -26.35917 -25.78774 -24.06278 -23.19229 -22.46154 -20.97950 -20.53986 -19.54957 -18.79157 -17.85087 -17.60064 -17.42103 -17.14191 -16.59471 -16.34498 -16.11000 -15.84096 -15.41664 -15.34612 -15.22513 -14.71890 -14.54253 -14.25959 -14.11749 -13.92331 -13.51052 -13.47149 -13.35763 -13.11910 -13.06396 -12.99276 -12.64979 -12.57783 -12.35880 -12.10926 -12.04804 -11.98128 -11.96386 -11.88391 -11.48405 -10.92312 -10.66288 -10.45512 -10.16603 -9.46461 -9.32492 -8.38895 -6.15981 -0.31027 0.32692 1.35040 1.40736 1.43781 1.53183 1.79812 1.90450 2.33301 2.76510 2.95574 3.07784 3.12375 3.63196 3.80282 3.83438 3.95013 4.08011 4.09393 4.21924 4.25379 4.31530 4.33914 4.36706 4.41277 4.56011 4.61489 4.75429 4.84740 4.96216 4.98715 5.05908 5.11396 5.12128 5.17429 5.23565 5.32826 5.35282 5.39608 5.40831 5.44760 5.58557 5.62436 6.15902 6.26968 6.51229 6.61630 7.12295 7.34385 7.95263 8.64945 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.002584 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.260482 B =10832.591916 C =11670.907292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.104 3.896 4 N -0.444 5.444 5 C -0.342 4.342 6 H 0.060 0.940 7 C 0.008 3.992 8 N -0.886 5.886 9 Si 0.981 3.019 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.260 1.260 13 C 0.442 3.558 14 O -0.619 6.619 15 C 0.060 3.940 16 O -0.316 6.316 17 C 0.146 3.854 18 C -0.183 4.183 19 C -0.027 4.027 20 C -0.230 4.230 21 C 0.401 3.599 22 O -0.502 6.502 23 C -0.166 4.166 24 C -0.145 4.145 25 C -0.010 4.010 26 C -0.225 4.225 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.275 0.725 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.180 0.820 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.346 -5.352 -14.838 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C -0.019 4.019 4 N -0.164 5.164 5 C -0.470 4.470 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.523 5.523 9 Si 0.805 3.195 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.185 1.185 13 C 0.231 3.769 14 O -0.505 6.505 15 C -0.018 4.018 16 O -0.228 6.228 17 C 0.099 3.901 18 C -0.201 4.201 19 C -0.045 4.045 20 C -0.231 4.231 21 C 0.283 3.717 22 O -0.381 6.381 23 C -0.203 4.203 24 C -0.203 4.203 25 C -0.028 4.028 26 C -0.244 4.244 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.197 0.803 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.297 -5.224 -15.151 20.824 hybrid contribution 0.972 0.233 1.201 1.562 sum -12.325 -4.991 -13.950 19.273 Atomic orbital electron populations 1.21643 0.92883 1.02544 1.02499 1.21924 0.97720 0.96196 1.01507 1.21793 0.79375 0.97002 1.03733 1.43650 1.06274 1.62743 1.03696 1.19350 1.12693 1.22680 0.92257 0.92176 1.26145 0.96812 0.92661 1.03897 1.69970 1.33510 1.13424 1.35370 0.85071 0.78668 0.78170 0.77617 1.19678 1.20537 1.18465 1.20866 0.88024 0.82076 0.85922 1.90527 1.16435 1.56053 1.87469 1.22656 0.91021 1.04736 0.83349 1.86131 1.36648 1.86671 1.13360 1.19870 0.93730 0.92432 0.84020 1.20396 1.00424 1.08680 0.90641 1.21137 0.95345 0.92199 0.95851 1.20625 0.94077 1.12378 0.96060 1.22881 0.93021 0.69400 0.86427 1.90508 1.64340 1.39167 1.44059 1.22083 0.91585 1.06922 0.99731 1.21611 1.02467 1.01654 0.94545 1.21478 1.01566 0.90314 0.89417 1.21475 0.92738 1.09493 1.00674 0.93225 0.90893 0.91200 0.91990 0.93554 0.89752 0.91021 0.91500 0.87549 0.86884 0.85233 0.84409 0.85755 0.85664 0.93542 0.89786 0.93600 0.80298 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.31 16 2 C -0.13 -4.11 6.17 30.59 0.19 -3.92 16 3 C 0.10 4.01 4.69 86.38 0.41 4.42 16 4 N -0.44 -21.89 2.50 -635.54 -1.59 -23.49 16 5 C -0.34 -19.00 8.84 84.04 0.74 -18.26 16 6 H 0.06 3.62 7.82 -2.91 -0.02 3.60 16 7 C 0.01 0.43 4.95 84.93 0.42 0.85 16 8 N -0.89 -46.04 11.61 21.66 0.25 -45.79 16 9 Si 0.98 41.38 29.59 68.60 2.03 43.41 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 13 C 0.44 21.90 7.67 87.66 0.67 22.57 16 14 O -0.62 -37.25 16.41 15.94 0.26 -36.99 16 15 C 0.06 2.11 3.82 71.24 0.27 2.38 16 16 O -0.32 -11.98 9.66 -70.82 -0.68 -12.67 16 17 C 0.15 4.29 6.70 22.67 0.15 4.44 16 18 C -0.18 -5.12 9.95 22.21 0.22 -4.90 16 19 C -0.03 -0.66 9.57 22.44 0.21 -0.45 16 20 C -0.23 -4.66 5.87 -20.15 -0.12 -4.78 16 21 C 0.40 7.64 7.11 27.94 0.20 7.84 16 22 O -0.50 -13.32 15.97 -3.07 -0.05 -13.37 16 23 C -0.17 -1.67 5.02 29.85 0.15 -1.52 16 24 C -0.15 -1.73 9.20 71.98 0.66 -1.07 16 25 C -0.01 -0.16 9.44 22.44 0.21 0.05 16 26 C -0.23 -4.72 8.99 22.21 0.20 -4.52 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.72 6.60 -2.39 -0.02 1.70 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 3.70 5.76 -2.39 -0.01 3.69 16 33 H 0.07 2.36 6.66 -2.38 -0.02 2.34 16 34 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 35 H 0.11 3.19 6.92 -2.39 -0.02 3.18 16 36 H 0.11 3.15 6.04 -2.38 -0.01 3.14 16 37 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.14 3.23 7.64 -2.91 -0.02 3.21 16 39 H 0.12 0.68 8.08 -2.39 -0.02 0.66 16 40 H 0.13 0.65 8.09 -2.38 -0.02 0.63 16 41 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 42 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 44 H 0.18 1.16 7.04 -2.91 -0.02 1.14 16 45 H 0.16 2.59 6.27 -2.91 -0.02 2.57 16 Total: -1.00 -76.76 375.14 6.52 -70.24 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.99 Total: 17.82 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.31 Total: 0.83 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.34 Total: -69.28 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -0.47 Total: -63.03 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -76.76 6.52 -70.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.070 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds