Wall clock time and date at job start Tue Mar 31 2020 11:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47203 * 2 1 4 4 N 1.46496 * 109.47539 * 179.97438 * 3 2 1 5 5 C 1.36753 * 119.99715 * 265.21088 * 4 3 2 6 6 H 1.08001 * 119.99433 * 143.38819 * 5 4 3 7 7 C 1.39087 * 120.00030 * 323.37882 * 5 4 3 8 8 N 1.31342 * 119.99784 * 154.23688 * 7 5 4 9 9 Si 1.86800 * 120.00193 * 334.24287 * 7 5 4 10 10 H 1.48498 * 109.47411 * 93.49558 * 9 7 5 11 11 H 1.48502 * 109.47106 * 213.49388 * 9 7 5 12 12 H 1.48500 * 109.47136 * 333.49040 * 9 7 5 13 13 C 1.34777 * 120.00306 * 85.20184 * 4 3 2 14 14 O 1.21771 * 120.00305 * 179.97438 * 13 4 3 15 15 C 1.41798 * 119.99354 * 0.02562 * 13 4 3 16 16 C 1.35153 * 119.99595 * 179.97438 * 15 13 4 17 17 C 1.46945 * 119.99895 * 179.97438 * 16 15 13 18 18 C 1.39991 * 120.09804 * 359.97438 * 17 16 15 19 19 C 1.37733 * 119.97107 * 179.97438 * 18 17 16 20 20 C 1.38875 * 120.17889 * 0.02562 * 19 18 17 21 21 O 1.35824 * 119.90128 * 179.97438 * 20 19 18 22 22 C 1.42903 * 116.99942 * 359.97438 * 21 20 19 23 23 C 1.39446 * 120.19634 * 359.97438 * 20 19 18 24 24 O 1.35990 * 119.98648 * 180.02562 * 23 20 19 25 25 C 1.42903 * 116.99947 * 179.97438 * 24 23 20 26 26 C 1.38087 * 120.02423 * 0.02562 * 23 20 19 27 27 H 1.08994 * 109.46727 * 60.00596 * 1 2 3 28 28 H 1.09002 * 109.46488 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47313 * 299.99819 * 1 2 3 30 30 H 1.09000 * 109.47989 * 239.99852 * 2 1 3 31 31 H 1.09004 * 109.47202 * 119.99363 * 2 1 3 32 32 H 1.09000 * 109.46838 * 59.99890 * 3 2 1 33 33 H 1.08995 * 109.46655 * 299.99897 * 3 2 1 34 34 H 0.97005 * 120.00332 * 180.02562 * 8 7 5 35 35 H 1.07995 * 120.00691 * 359.97438 * 15 13 4 36 36 H 1.07995 * 119.99714 * 359.97438 * 16 15 13 37 37 H 1.08000 * 120.01315 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.91199 * 179.72422 * 19 18 17 39 39 H 1.08998 * 109.46949 * 299.99768 * 22 21 20 40 40 H 1.08997 * 109.47326 * 59.99954 * 22 21 20 41 41 H 1.09002 * 109.46843 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47069 * 299.99605 * 25 24 23 43 43 H 1.09001 * 109.46985 * 59.99959 * 25 24 23 44 44 H 1.08999 * 109.46836 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.08862 * 179.97438 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1882 1.5417 1.1811 6 1 5.1083 0.9936 1.3200 7 6 3.6981 2.3485 2.2026 8 7 4.0107 2.0889 3.4516 9 14 2.5954 3.8011 1.7982 10 1 1.1734 3.3822 1.8845 11 1 2.8477 4.8987 2.7661 12 1 2.8886 4.2772 0.4225 13 6 4.1794 1.3449 -1.1622 14 8 5.3971 1.3454 -1.1617 15 6 3.4709 1.2425 -2.3862 16 6 4.1472 1.1450 -3.5523 17 6 3.4130 1.0383 -4.8207 18 6 2.0131 1.0369 -4.8235 19 6 1.3275 0.9373 -6.0140 20 6 2.0213 0.8376 -7.2129 21 8 1.3396 0.7392 -8.3835 22 6 -0.0873 0.7440 -8.3057 23 6 3.4158 0.8383 -7.2184 24 8 4.0908 0.7409 -8.3949 25 6 5.5182 0.7484 -8.3264 26 6 4.1114 0.9377 -6.0297 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6686 2.6513 4.1642 35 1 2.3909 1.2424 -2.3867 36 1 5.2271 1.1454 -3.5518 37 1 1.4709 1.1148 -3.8928 38 1 0.2475 0.9319 -6.0147 39 1 -0.4210 -0.0991 -7.7007 40 1 -0.4231 1.6747 -7.8486 41 1 -0.5061 0.6594 -9.3085 42 1 5.8553 1.6798 -7.8716 43 1 5.8574 -0.0940 -7.7235 44 1 5.9306 0.6645 -9.3319 45 1 5.1913 0.9379 -6.0327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:57 Heat of formation + Delta-G solvation = -51.089245 kcal Electronic energy + Delta-G solvation = -26548.041910 eV Core-core repulsion = 22725.762221 eV Total energy + Delta-G solvation = -3822.279689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64582 -39.10781 -38.59867 -37.25977 -35.57300 -33.30515 -32.67219 -31.62388 -30.55954 -29.63431 -27.44343 -27.27064 -26.03524 -25.28467 -23.26934 -22.20084 -21.41678 -20.73941 -18.66427 -18.30624 -17.22970 -16.99179 -16.62418 -16.43246 -16.22185 -15.52844 -15.40948 -14.88814 -14.66062 -14.43887 -14.25414 -13.96458 -13.85031 -13.23594 -13.09057 -12.92743 -12.56064 -12.53295 -12.36865 -12.18779 -11.93021 -11.78480 -11.58306 -11.43619 -11.34844 -11.32079 -11.17306 -10.87732 -10.78202 -10.60469 -10.08021 -9.93929 -9.50461 -9.11600 -8.62361 -8.54085 -7.81351 -7.55163 -6.52207 -3.95630 0.72032 1.25998 2.26622 2.99385 3.09440 3.12600 3.18666 3.24992 3.71964 4.07738 4.31811 4.42918 4.61442 4.74176 4.80579 4.93591 4.95103 4.95879 5.03276 5.08768 5.20043 5.22217 5.27034 5.34135 5.35825 5.46902 5.48093 5.55541 5.66688 5.76470 5.90378 6.05701 6.08312 6.16851 6.21622 6.24343 6.29027 6.53799 6.54997 6.70981 6.79886 6.85676 6.92941 7.43140 7.48650 8.24872 8.47934 8.93212 9.25787 9.78477 10.59176 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003145 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.968989 B = 8899.613622 C = 9851.595519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.087 3.913 4 N -0.450 5.450 5 C -0.310 4.310 6 H 0.108 0.892 7 C 0.063 3.937 8 N -0.849 5.849 9 Si 0.869 3.131 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.261 1.261 13 C 0.478 3.522 14 O -0.577 6.577 15 C -0.171 4.171 16 C -0.070 4.070 17 C -0.045 4.045 18 C -0.107 4.107 19 C -0.170 4.170 20 C 0.094 3.906 21 O -0.308 6.308 22 C 0.026 3.974 23 C 0.098 3.902 24 O -0.309 6.309 25 C 0.025 3.975 26 C -0.160 4.160 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.276 0.724 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 -2.541 -20.200 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.036 4.036 4 N -0.169 5.169 5 C -0.437 4.437 6 H 0.125 0.875 7 C -0.145 4.145 8 N -0.484 5.484 9 Si 0.696 3.304 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.271 3.729 14 O -0.462 6.462 15 C -0.191 4.191 16 C -0.092 4.092 17 C -0.046 4.046 18 C -0.125 4.125 19 C -0.189 4.189 20 C 0.048 3.952 21 O -0.221 6.221 22 C -0.069 4.069 23 C 0.053 3.947 24 O -0.223 6.223 25 C -0.070 4.070 26 C -0.179 4.179 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.117 0.883 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.779 -2.518 -20.311 22.270 hybrid contribution -0.749 0.873 0.412 1.222 sum -9.529 -1.645 -19.898 22.123 Atomic orbital electron populations 1.21729 0.96092 1.01354 1.01503 1.21926 0.94987 0.97580 1.03107 1.21987 0.83015 0.96935 1.01710 1.43757 1.03849 1.62993 1.06261 1.19079 1.09576 1.27123 0.87927 0.87493 1.25396 0.97081 0.97416 0.94606 1.69778 1.43055 1.36581 0.98967 0.87081 0.80021 0.83529 0.79802 1.19904 1.21058 1.18546 1.16953 0.87878 0.84275 0.83747 1.90679 1.13517 1.55019 1.87015 1.22444 1.00194 1.02401 0.94098 1.22114 0.99970 0.97231 0.89841 1.18833 0.92777 1.00234 0.92711 1.21156 0.93357 1.00259 0.97757 1.20960 1.00089 1.06687 0.91172 1.18360 0.88609 1.02550 0.85678 1.86112 1.19666 1.88590 1.27779 1.23057 0.78708 1.01317 1.03802 1.18075 0.88627 1.02376 0.85607 1.86145 1.19951 1.88818 1.27390 1.23080 0.78509 1.01580 1.03855 1.21250 1.00260 1.05835 0.90522 0.93105 0.92783 0.92728 0.92046 0.90636 0.90518 0.92039 0.91371 0.86389 0.84952 0.85006 0.84684 0.92692 0.92698 0.88370 0.92546 0.92541 0.88312 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.14 -2.31 6.11 -26.73 -0.16 -2.47 16 3 C 0.09 1.72 3.71 -4.04 -0.02 1.71 16 4 N -0.45 -10.92 2.18 -118.00 -0.26 -11.18 16 5 C -0.31 -8.71 9.33 -15.04 -0.14 -8.85 16 6 H 0.11 3.39 7.89 -52.49 -0.41 2.97 16 7 C 0.06 1.70 5.21 -17.45 -0.09 1.61 16 8 N -0.85 -23.98 13.95 55.50 0.77 -23.20 16 9 Si 0.87 20.18 25.34 -169.99 -4.31 15.87 16 10 H -0.27 -5.80 6.56 56.52 0.37 -5.42 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.48 11.43 7.37 -14.90 -0.11 11.32 16 14 O -0.58 -15.97 15.96 5.13 0.08 -15.89 16 15 C -0.17 -3.15 8.01 -39.32 -0.31 -3.47 16 16 C -0.07 -1.18 9.41 -37.16 -0.35 -1.52 16 17 C -0.05 -0.64 5.87 -105.06 -0.62 -1.26 16 18 C -0.11 -1.36 9.40 -39.11 -0.37 -1.72 16 19 C -0.17 -1.94 9.01 -39.53 -0.36 -2.30 16 20 C 0.09 1.20 6.71 -38.90 -0.26 0.94 16 21 O -0.31 -3.70 10.27 -33.87 -0.35 -4.05 16 22 C 0.03 0.19 9.81 101.05 0.99 1.19 16 23 C 0.10 1.31 6.69 -39.19 -0.26 1.05 16 24 O -0.31 -3.90 10.27 -34.39 -0.35 -4.25 16 25 C 0.02 0.21 9.81 101.05 0.99 1.20 16 26 C -0.16 -2.08 8.78 -38.98 -0.34 -2.42 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.98 7.61 -51.93 -0.40 0.59 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.08 1.61 3.61 -51.93 -0.19 1.42 16 33 H 0.06 1.04 6.37 -51.93 -0.33 0.71 16 34 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.12 1.84 4.02 -52.49 -0.21 1.63 16 36 H 0.13 2.32 7.45 -52.49 -0.39 1.93 16 37 H 0.13 1.50 6.15 -52.49 -0.32 1.18 16 38 H 0.14 1.15 6.27 -52.49 -0.33 0.82 16 39 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 40 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 43 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.14 1.55 6.28 -52.49 -0.33 1.22 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -33.76 367.33 -6.12 -39.88 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.20 Total: 3.89 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.04 Total: -6.60 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.52 Total: -34.38 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.62 Total: -24.20 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.31 Total: 15.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.76 -6.12 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.212 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds