Wall clock time and date at job start Tue Mar 31 2020 12:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 N 1.46502 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.37103 * 120.00015 * 264.53838 * 4 3 2 6 6 H 1.08001 * 119.99930 * 146.01301 * 5 4 3 7 7 C 1.38948 * 119.99907 * 326.01298 * 5 4 3 8 8 N 1.31407 * 120.00442 * 337.81360 * 7 5 4 9 9 Si 1.86806 * 119.99782 * 157.81057 * 7 5 4 10 10 H 1.48495 * 109.47126 * 60.00064 * 9 7 5 11 11 H 1.48501 * 109.47058 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47000 * 299.99839 * 9 7 5 13 13 C 1.34775 * 119.99931 * 84.54420 * 4 3 2 14 14 O 1.21290 * 120.00181 * 359.97438 * 13 4 3 15 15 C 1.50702 * 119.99959 * 180.02562 * 13 4 3 16 16 C 1.52993 * 109.47207 * 179.97438 * 15 13 4 17 17 C 1.50702 * 109.47207 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99881 * 0.02562 * 17 16 15 19 19 C 1.46861 * 120.00082 * 179.97438 * 17 16 15 20 20 C 1.40044 * 120.10963 * 359.72610 * 19 17 16 21 21 C 1.37121 * 119.87797 * 179.74265 * 20 19 17 22 22 C 1.39079 * 120.11670 * 0.52969 * 21 20 19 23 23 O 1.35662 * 119.88861 * 179.70065 * 22 21 20 24 24 C 1.42896 * 116.99728 * 0.02562 * 23 22 21 25 25 C 1.39080 * 120.22982 * 359.72206 * 22 21 20 26 26 C 1.37113 * 120.11698 * 0.02562 * 25 22 21 27 27 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47586 * 300.00567 * 1 2 3 29 29 H 1.09008 * 109.47231 * 59.99971 * 1 2 3 30 30 H 1.08997 * 109.47135 * 240.00011 * 2 1 3 31 31 H 1.08997 * 109.46904 * 119.99678 * 2 1 3 32 32 H 1.09002 * 109.47644 * 59.99871 * 3 2 1 33 33 H 1.09002 * 109.47493 * 299.99737 * 3 2 1 34 34 H 0.96995 * 120.00222 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47291 * 59.99313 * 15 13 4 36 36 H 1.09001 * 109.47059 * 299.99562 * 15 13 4 37 37 H 1.08996 * 109.47479 * 59.99357 * 16 15 13 38 38 H 1.09001 * 109.47010 * 299.99906 * 16 15 13 39 39 H 1.07997 * 120.06407 * 359.97438 * 20 19 17 40 40 H 1.07999 * 119.94191 * 180.25466 * 21 20 19 41 41 H 1.08999 * 109.47528 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47451 * 300.00377 * 24 23 22 43 43 H 1.09010 * 109.47258 * 60.00314 * 24 23 22 44 44 H 1.08005 * 119.94523 * 179.97438 * 25 22 21 45 45 H 1.07997 * 120.06446 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5557 1.1828 6 1 5.1316 1.0428 1.3126 7 6 3.6728 2.3302 2.2140 8 7 2.8020 3.2784 1.9506 9 14 4.2155 2.0235 3.9750 10 1 5.6837 2.2183 4.0816 11 1 3.5223 2.9756 4.8795 12 1 3.8711 0.6322 4.3639 13 6 4.1793 1.3313 -1.1610 14 8 3.5733 1.2308 -2.2068 15 6 5.6863 1.3307 -1.1603 16 6 6.1969 1.1929 -2.5959 17 6 7.7040 1.1929 -2.5953 18 8 8.3099 1.2929 -1.5494 19 6 8.4388 1.0708 -3.8609 20 6 7.7414 0.9484 -5.0692 21 6 8.4323 0.8399 -6.2487 22 6 9.8231 0.8403 -6.2454 23 8 10.5020 0.7267 -7.4144 24 6 9.7242 0.6112 -8.6076 25 6 10.5204 0.9563 -5.0476 26 6 9.8392 1.0705 -3.8632 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.4413 3.8193 2.6704 35 1 6.0491 0.4935 -0.5640 36 1 6.0498 2.2654 -0.7333 37 1 5.8342 2.0298 -3.1926 38 1 5.8334 0.2580 -3.0226 39 1 6.6615 0.9431 -5.0725 40 1 7.8955 0.7496 -7.1815 41 1 10.3885 0.5280 -9.4678 42 1 9.0950 -0.2768 -8.5467 43 1 9.0957 1.4949 -8.7186 44 1 11.6005 0.9556 -5.0503 45 1 10.3815 1.1601 -2.9336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061412113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:10 Heat of formation + Delta-G solvation = -93.999795 kcal Electronic energy + Delta-G solvation = -26025.933922 eV Core-core repulsion = 22201.793492 eV Total energy + Delta-G solvation = -3824.140430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55493 -39.36741 -38.43470 -37.14162 -35.15953 -32.92433 -32.35828 -31.39965 -31.11276 -30.50183 -27.92015 -26.33372 -25.24422 -24.06213 -23.13387 -22.13775 -20.65233 -19.48077 -18.95208 -18.52256 -17.11788 -16.50853 -16.21510 -16.11386 -15.67427 -15.32379 -14.88062 -14.69943 -14.35739 -14.26067 -13.87536 -13.84057 -13.72145 -13.38328 -12.95137 -12.90740 -12.63238 -12.45028 -12.20759 -12.01741 -11.60149 -11.34913 -11.32479 -11.30169 -11.14152 -10.97387 -10.90783 -10.63136 -10.49015 -10.33225 -10.19410 -9.71413 -9.44130 -9.32036 -9.04940 -8.45805 -8.39008 -7.50436 -6.36548 -4.02178 0.65351 1.16526 2.50841 2.89611 3.15679 3.23128 3.26053 3.67946 3.93837 4.09529 4.19281 4.47259 4.59982 4.75475 4.78440 4.86685 5.02703 5.06283 5.11995 5.17993 5.31893 5.39400 5.67965 5.69841 5.79839 5.81052 5.86278 5.95703 6.02231 6.08940 6.17847 6.35030 6.39648 6.44061 6.54107 6.55826 6.62174 6.72255 6.76733 6.84914 7.02653 7.14744 7.40101 7.52442 7.77960 7.95497 8.40353 9.09577 9.54837 9.97792 10.64923 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.002655 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.063194 B =10543.207699 C =11783.862480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.437 5.437 5 C -0.340 4.340 6 H 0.092 0.908 7 C 0.044 3.956 8 N -0.858 5.858 9 Si 0.913 3.087 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.466 3.534 14 O -0.613 6.613 15 C -0.109 4.109 16 C -0.146 4.146 17 C 0.396 3.604 18 O -0.454 6.454 19 C -0.202 4.202 20 C -0.028 4.028 21 C -0.223 4.223 22 C 0.152 3.848 23 O -0.315 6.315 24 C 0.025 3.975 25 C -0.167 4.167 26 C -0.024 4.024 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.270 0.730 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.135 0.865 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 -4.738 -14.604 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.154 5.154 5 C -0.468 4.468 6 H 0.109 0.891 7 C -0.162 4.162 8 N -0.495 5.495 9 Si 0.739 3.261 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.255 3.745 14 O -0.501 6.501 15 C -0.149 4.149 16 C -0.184 4.184 17 C 0.274 3.726 18 O -0.330 6.330 19 C -0.204 4.204 20 C -0.046 4.046 21 C -0.242 4.242 22 C 0.106 3.894 23 O -0.228 6.228 24 C -0.070 4.070 25 C -0.186 4.186 26 C -0.042 4.042 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.153 0.847 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.611 -4.570 -14.463 17.956 hybrid contribution -0.046 -0.084 0.733 0.740 sum 9.565 -4.655 -13.730 17.368 Atomic orbital electron populations 1.21655 0.96647 1.00370 1.01365 1.21833 0.94660 0.99557 1.01242 1.21445 0.81540 0.94431 1.03524 1.43495 1.04792 1.61992 1.05072 1.19447 1.07431 1.29382 0.90512 0.89052 1.25317 0.96973 0.93509 1.00443 1.69936 1.30124 1.16161 1.33249 0.86227 0.79184 0.78433 0.82280 1.19574 1.20937 1.19811 1.20366 0.89332 0.81116 0.83659 1.90494 1.70655 1.57135 1.31769 1.21136 0.94190 1.04586 0.94979 1.21756 0.91527 1.05049 1.00024 1.22555 0.91819 0.71128 0.87073 1.90522 1.71938 1.36326 1.34172 1.20585 0.94391 1.09988 0.95397 1.21270 1.00719 0.91889 0.90751 1.21116 0.92816 1.10404 0.99822 1.19394 0.90676 0.93272 0.86027 1.86023 1.36068 1.87214 1.13507 1.23126 0.97205 1.01619 0.85078 1.20270 1.00619 1.08101 0.89607 1.21144 0.93183 0.91956 0.97906 0.93686 0.93016 0.93168 0.92901 0.92448 0.87577 0.93119 0.91993 0.89976 0.89098 0.88115 0.88264 0.84154 0.84862 0.88102 0.92300 0.92290 0.84730 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.79 6.22 -26.73 -0.17 -2.96 16 3 C 0.11 2.76 4.90 -4.04 -0.02 2.74 16 4 N -0.44 -11.10 2.56 -114.81 -0.29 -11.39 16 5 C -0.34 -8.73 8.70 -14.93 -0.13 -8.86 16 6 H 0.09 2.27 6.97 -52.49 -0.37 1.91 16 7 C 0.04 1.11 4.92 -17.47 -0.09 1.02 16 8 N -0.86 -22.76 11.34 55.50 0.63 -22.13 16 9 Si 0.91 19.73 29.61 -169.99 -5.03 14.70 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.47 11.28 7.60 -10.99 -0.08 11.20 16 14 O -0.61 -15.62 15.65 5.55 0.09 -15.53 16 15 C -0.11 -2.24 3.64 -27.89 -0.10 -2.34 16 16 C -0.15 -2.43 3.59 -27.89 -0.10 -2.53 16 17 C 0.40 6.24 7.11 -30.82 -0.22 6.02 16 18 O -0.45 -8.39 15.97 5.55 0.09 -8.30 16 19 C -0.20 -2.67 5.87 -105.06 -0.62 -3.29 16 20 C -0.03 -0.32 9.44 -39.31 -0.37 -0.69 16 21 C -0.22 -2.21 8.99 -39.68 -0.36 -2.57 16 22 C 0.15 1.61 6.70 -38.96 -0.26 1.35 16 23 O -0.32 -3.00 10.48 -18.69 -0.20 -3.20 16 24 C 0.02 0.14 9.80 101.05 0.99 1.13 16 25 C -0.17 -1.80 9.95 -39.68 -0.39 -2.20 16 26 C -0.02 -0.29 9.57 -39.31 -0.38 -0.66 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.11 2.71 5.35 -51.93 -0.28 2.43 16 33 H 0.05 1.27 7.59 -51.93 -0.39 0.87 16 34 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.08 1.67 7.60 -51.93 -0.39 1.27 16 36 H 0.09 1.96 8.05 -51.93 -0.42 1.54 16 37 H 0.10 1.63 8.05 -51.93 -0.42 1.21 16 38 H 0.10 1.56 8.03 -51.93 -0.42 1.14 16 39 H 0.14 1.42 7.04 -52.49 -0.37 1.05 16 40 H 0.13 0.99 6.27 -52.49 -0.33 0.66 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 43 H 0.06 0.29 7.65 -51.92 -0.40 -0.11 16 44 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.14 1.64 7.64 -52.49 -0.40 1.24 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -30.96 376.95 -7.63 -38.60 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.67 Total: 6.27 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.92 Total: -4.70 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.34 Total: -33.52 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.02 Total: -27.03 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.96 -7.63 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061412113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.403 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds