Wall clock time and date at job start Tue Mar 31 2020 12:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 N 1.46502 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.37103 * 120.00015 * 264.53838 * 4 3 2 6 6 H 1.08001 * 119.99930 * 146.01301 * 5 4 3 7 7 C 1.38948 * 119.99907 * 326.01298 * 5 4 3 8 8 N 1.31407 * 120.00442 * 337.81360 * 7 5 4 9 9 Si 1.86806 * 119.99782 * 157.81057 * 7 5 4 10 10 H 1.48495 * 109.47126 * 60.00064 * 9 7 5 11 11 H 1.48501 * 109.47058 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47000 * 299.99839 * 9 7 5 13 13 C 1.34775 * 119.99931 * 84.54420 * 4 3 2 14 14 O 1.21290 * 120.00181 * 359.97438 * 13 4 3 15 15 C 1.50702 * 119.99959 * 180.02562 * 13 4 3 16 16 C 1.52993 * 109.47207 * 179.97438 * 15 13 4 17 17 C 1.50702 * 109.47207 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99881 * 0.02562 * 17 16 15 19 19 C 1.46861 * 120.00082 * 179.97438 * 17 16 15 20 20 C 1.40044 * 120.10963 * 359.72610 * 19 17 16 21 21 C 1.37121 * 119.87797 * 179.74265 * 20 19 17 22 22 C 1.39079 * 120.11670 * 0.52969 * 21 20 19 23 23 O 1.35662 * 119.88861 * 179.70065 * 22 21 20 24 24 C 1.42896 * 116.99728 * 0.02562 * 23 22 21 25 25 C 1.39080 * 120.22982 * 359.72206 * 22 21 20 26 26 C 1.37113 * 120.11698 * 0.02562 * 25 22 21 27 27 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47586 * 300.00567 * 1 2 3 29 29 H 1.09008 * 109.47231 * 59.99971 * 1 2 3 30 30 H 1.08997 * 109.47135 * 240.00011 * 2 1 3 31 31 H 1.08997 * 109.46904 * 119.99678 * 2 1 3 32 32 H 1.09002 * 109.47644 * 59.99871 * 3 2 1 33 33 H 1.09002 * 109.47493 * 299.99737 * 3 2 1 34 34 H 0.96995 * 120.00222 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47291 * 59.99313 * 15 13 4 36 36 H 1.09001 * 109.47059 * 299.99562 * 15 13 4 37 37 H 1.08996 * 109.47479 * 59.99357 * 16 15 13 38 38 H 1.09001 * 109.47010 * 299.99906 * 16 15 13 39 39 H 1.07997 * 120.06407 * 359.97438 * 20 19 17 40 40 H 1.07999 * 119.94191 * 180.25466 * 21 20 19 41 41 H 1.08999 * 109.47528 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47451 * 300.00377 * 24 23 22 43 43 H 1.09010 * 109.47258 * 60.00314 * 24 23 22 44 44 H 1.08005 * 119.94523 * 179.97438 * 25 22 21 45 45 H 1.07997 * 120.06446 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5557 1.1828 6 1 5.1316 1.0428 1.3126 7 6 3.6728 2.3302 2.2140 8 7 2.8020 3.2784 1.9506 9 14 4.2155 2.0235 3.9750 10 1 5.6837 2.2183 4.0816 11 1 3.5223 2.9756 4.8795 12 1 3.8711 0.6322 4.3639 13 6 4.1793 1.3313 -1.1610 14 8 3.5733 1.2308 -2.2068 15 6 5.6863 1.3307 -1.1603 16 6 6.1969 1.1929 -2.5959 17 6 7.7040 1.1929 -2.5953 18 8 8.3099 1.2929 -1.5494 19 6 8.4388 1.0708 -3.8609 20 6 7.7414 0.9484 -5.0692 21 6 8.4323 0.8399 -6.2487 22 6 9.8231 0.8403 -6.2454 23 8 10.5020 0.7267 -7.4144 24 6 9.7242 0.6112 -8.6076 25 6 10.5204 0.9563 -5.0476 26 6 9.8392 1.0705 -3.8632 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.4413 3.8193 2.6704 35 1 6.0491 0.4935 -0.5640 36 1 6.0498 2.2654 -0.7333 37 1 5.8342 2.0298 -3.1926 38 1 5.8334 0.2580 -3.0226 39 1 6.6615 0.9431 -5.0725 40 1 7.8955 0.7496 -7.1815 41 1 10.3885 0.5280 -9.4678 42 1 9.0950 -0.2768 -8.5467 43 1 9.0957 1.4949 -8.7186 44 1 11.6005 0.9556 -5.0503 45 1 10.3815 1.1601 -2.9336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061412113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:09 Heat of formation + Delta-G solvation = -110.363881 kcal Electronic energy + Delta-G solvation = -26026.643522 eV Core-core repulsion = 22201.793492 eV Total energy + Delta-G solvation = -3824.850030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46276 -40.69731 -40.07180 -38.05041 -37.06141 -34.65313 -33.83581 -33.12506 -32.21248 -31.46069 -28.64557 -27.84393 -27.00464 -25.56632 -24.13584 -23.14810 -22.28187 -20.98598 -20.56535 -19.31447 -18.72698 -17.97915 -17.37682 -17.10282 -16.90686 -16.70858 -16.45595 -16.10932 -15.82891 -15.51851 -15.48069 -15.19060 -14.64504 -14.56498 -14.35944 -14.09341 -13.77768 -13.70838 -13.46815 -13.32374 -13.17623 -12.98742 -12.81851 -12.65199 -12.54946 -12.36749 -12.11924 -12.06574 -12.02989 -11.92215 -11.80786 -11.51627 -10.98268 -10.70928 -10.33537 -10.16154 -9.48532 -9.31034 -8.31983 -6.04317 -0.32467 0.33133 1.40874 1.42273 1.47155 1.55902 2.02719 2.25732 2.31415 2.75883 2.79435 3.03857 3.28975 3.69643 3.84933 3.93324 4.14290 4.17314 4.21079 4.28295 4.31569 4.36577 4.41396 4.44011 4.51631 4.58310 4.63705 4.74149 4.76518 4.88063 4.97548 4.98065 5.00168 5.09277 5.10452 5.13951 5.23015 5.23979 5.37391 5.40406 5.45891 5.58544 5.60409 6.00988 6.31177 6.42554 6.55743 7.11256 7.59318 8.02000 8.70096 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.002655 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.063194 B =10543.207699 C =11783.862480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.451 5.451 5 C -0.357 4.357 6 H 0.094 0.906 7 C 0.004 3.996 8 N -0.888 5.888 9 Si 0.979 3.021 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.455 3.545 14 O -0.629 6.629 15 C -0.100 4.100 16 C -0.138 4.138 17 C 0.405 3.595 18 O -0.491 6.491 19 C -0.225 4.225 20 C -0.027 4.027 21 C -0.220 4.220 22 C 0.157 3.843 23 O -0.326 6.326 24 C 0.013 3.987 25 C -0.173 4.173 26 C -0.029 4.029 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.273 0.727 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.122 0.878 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.151 0.849 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.951 -5.675 -15.823 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.168 5.168 5 C -0.485 4.485 6 H 0.111 0.889 7 C -0.199 4.199 8 N -0.525 5.525 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.191 1.191 13 C 0.246 3.754 14 O -0.518 6.518 15 C -0.140 4.140 16 C -0.175 4.175 17 C 0.286 3.714 18 O -0.370 6.370 19 C -0.226 4.226 20 C -0.045 4.045 21 C -0.238 4.238 22 C 0.110 3.890 23 O -0.238 6.238 24 C -0.081 4.081 25 C -0.191 4.191 26 C -0.047 4.047 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.168 0.832 40 H 0.179 0.821 41 H 0.140 0.860 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.168 0.832 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.040 -5.514 -15.710 19.443 hybrid contribution -0.159 0.230 0.931 0.972 sum 9.881 -5.285 -14.779 18.547 Atomic orbital electron populations 1.21609 0.93578 1.02354 1.01757 1.21721 0.97305 0.96829 1.00445 1.21434 0.81336 0.96363 1.01783 1.43777 1.05396 1.62130 1.05515 1.19689 1.07924 1.29889 0.90985 0.88860 1.26134 0.96915 0.92870 1.03976 1.70027 1.31166 1.16868 1.34476 0.85209 0.78772 0.78460 0.77303 1.19222 1.20522 1.19091 1.20964 0.90780 0.80502 0.83199 1.90460 1.71392 1.57812 1.32139 1.21033 0.91628 1.03670 0.97641 1.21700 0.92529 1.05904 0.97411 1.22597 0.91199 0.69854 0.87751 1.90508 1.72276 1.38627 1.35574 1.20377 0.94787 1.12816 0.94643 1.21408 1.01283 0.91294 0.90492 1.21387 0.92750 1.09304 1.00405 1.19550 0.91006 0.91944 0.86494 1.86025 1.37098 1.86679 1.14045 1.23467 0.97960 1.02587 0.84082 1.20440 1.01507 1.07821 0.89367 1.21173 0.92867 0.92163 0.98506 0.90881 0.92643 0.92791 0.93876 0.92886 0.88982 0.94938 0.91720 0.90059 0.90608 0.87581 0.87056 0.83177 0.82051 0.86003 0.91224 0.91300 0.83173 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.91 71.98 0.71 -3.72 16 2 C -0.12 -5.17 6.22 30.59 0.19 -4.98 16 3 C 0.11 5.65 4.90 86.38 0.42 6.08 16 4 N -0.45 -23.51 2.56 -635.53 -1.63 -25.13 16 5 C -0.36 -18.68 8.70 84.04 0.73 -17.95 16 6 H 0.09 4.73 6.97 -2.91 -0.02 4.71 16 7 C 0.00 0.22 4.92 84.93 0.42 0.64 16 8 N -0.89 -47.76 11.34 21.66 0.25 -47.52 16 9 Si 0.98 40.43 29.61 68.60 2.03 42.46 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 13 C 0.46 22.58 7.60 87.66 0.67 23.25 16 14 O -0.63 -32.56 15.65 -3.06 -0.05 -32.61 16 15 C -0.10 -4.22 3.64 29.85 0.11 -4.11 16 16 C -0.14 -4.62 3.59 29.85 0.11 -4.51 16 17 C 0.40 12.95 7.11 27.94 0.20 13.15 16 18 O -0.49 -18.75 15.97 -3.06 -0.05 -18.79 16 19 C -0.23 -5.86 5.87 -20.15 -0.12 -5.98 16 20 C -0.03 -0.56 9.44 22.45 0.21 -0.35 16 21 C -0.22 -3.82 8.99 22.21 0.20 -3.62 16 22 C 0.16 2.96 6.70 22.67 0.15 3.11 16 23 O -0.33 -5.33 10.48 -89.79 -0.94 -6.27 16 24 C 0.01 0.11 9.80 113.37 1.11 1.22 16 25 C -0.17 -3.50 9.95 22.21 0.22 -3.28 16 26 C -0.03 -0.69 9.57 22.44 0.21 -0.48 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 4.82 5.35 -2.39 -0.01 4.81 16 33 H 0.03 1.67 7.59 -2.39 -0.02 1.66 16 34 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.08 3.41 7.60 -2.38 -0.02 3.39 16 36 H 0.08 3.41 8.05 -2.39 -0.02 3.39 16 37 H 0.11 3.44 8.05 -2.39 -0.02 3.42 16 38 H 0.11 3.45 8.03 -2.39 -0.02 3.43 16 39 H 0.15 2.79 7.04 -2.91 -0.02 2.77 16 40 H 0.16 1.82 6.27 -2.91 -0.02 1.80 16 41 H 0.12 0.48 8.14 -2.39 -0.02 0.47 16 42 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 43 H 0.07 0.45 7.65 -2.38 -0.02 0.43 16 44 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 45 H 0.14 3.27 7.64 -2.91 -0.02 3.25 16 Total: -1.00 -67.36 376.95 6.15 -61.21 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.99 Total: 28.16 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.55 Total: -1.51 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.38 Total: -72.65 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -1.04 Total: -57.68 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -67.36 6.15 -61.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061412113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.151 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds