Wall clock time and date at job start Tue Mar 31 2020 12:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 N 1.46507 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.37095 * 119.99878 * 271.62979 * 4 3 2 6 6 H 1.08008 * 119.99607 * 140.61031 * 5 4 3 7 7 C 1.38948 * 120.00508 * 320.60844 * 5 4 3 8 8 N 1.31410 * 119.99876 * 340.93116 * 7 5 4 9 9 Si 1.86800 * 120.00245 * 160.92278 * 7 5 4 10 10 H 1.48499 * 109.46956 * 90.00215 * 9 7 5 11 11 H 1.48494 * 109.47273 * 210.00307 * 9 7 5 12 12 H 1.48504 * 109.46880 * 330.00263 * 9 7 5 13 13 C 1.34780 * 119.99723 * 91.63417 * 4 3 2 14 14 O 1.21291 * 119.99918 * 185.04280 * 13 4 3 15 15 C 1.50702 * 120.00089 * 5.04854 * 13 4 3 16 16 H 1.09005 * 109.46664 * 311.41225 * 15 13 4 17 17 C 1.52999 * 109.47293 * 71.41096 * 15 13 4 18 18 O 1.42897 * 109.46881 * 191.41071 * 15 13 4 19 19 C 1.35912 * 116.99668 * 153.32990 * 18 15 13 20 20 C 1.38895 * 119.97441 * 5.97800 * 19 18 15 21 21 C 1.38288 * 120.29507 * 179.97438 * 20 19 18 22 22 C 1.37926 * 120.23714 * 0.02562 * 21 20 19 23 23 C 1.39842 * 119.93787 * 0.02562 * 22 21 20 24 24 C 1.47179 * 120.14670 * 180.02562 * 23 22 21 25 25 C 1.50699 * 119.99906 * 359.97438 * 24 23 22 26 26 O 1.21258 * 120.00148 * 180.02562 * 24 23 22 27 27 C 1.38382 * 119.96933 * 185.70379 * 19 18 15 28 28 H 1.08998 * 109.47696 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47537 * 300.00317 * 1 2 3 30 30 H 1.09004 * 109.47017 * 59.99940 * 1 2 3 31 31 H 1.09004 * 109.47143 * 239.99457 * 2 1 3 32 32 H 1.09004 * 109.47017 * 120.00060 * 2 1 3 33 33 H 1.08999 * 109.46997 * 59.99778 * 3 2 1 34 34 H 1.08997 * 109.46836 * 299.99365 * 3 2 1 35 35 H 0.96997 * 119.99862 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46938 * 307.27786 * 17 15 13 37 37 H 1.09001 * 109.47047 * 67.27704 * 17 15 13 38 38 H 1.08997 * 109.46868 * 187.27701 * 17 15 13 39 39 H 1.07996 * 119.84875 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.87790 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.03692 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.46956 * 90.00728 * 25 24 23 43 43 H 1.09007 * 109.47413 * 210.00181 * 25 24 23 44 44 H 1.08995 * 109.47654 * 330.00051 * 25 24 23 45 45 H 1.08001 * 120.11951 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.4088 1.1877 6 1 5.0860 0.8123 1.2774 7 6 3.7317 2.1419 2.2754 8 7 2.8939 3.1374 2.0907 9 14 4.3061 1.7124 4.0002 10 1 5.5369 2.4803 4.3175 11 1 3.2419 2.0575 4.9767 12 1 4.5962 0.2581 4.0775 13 6 4.1794 1.4755 -1.1659 14 8 5.3888 1.3831 -1.1701 15 6 3.4308 1.6273 -2.4650 16 1 2.6038 0.9176 -2.4928 17 6 2.8841 3.0520 -2.5752 18 8 4.3156 1.3708 -3.5573 19 6 3.7570 0.9177 -4.7105 20 6 2.3752 0.8422 -4.8294 21 6 1.7997 0.3827 -5.9999 22 6 2.5940 -0.0050 -7.0587 23 6 3.9863 0.0659 -6.9494 24 6 4.8382 -0.3460 -8.0767 25 6 4.2104 -0.8462 -9.3521 26 8 6.0452 -0.2839 -7.9788 27 6 4.5653 0.5372 -5.7673 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.5737 3.6489 2.8501 36 1 2.3137 3.2927 -1.6780 37 1 3.7131 3.7523 -2.6774 38 1 2.2362 3.1260 -3.4485 39 1 1.7474 1.1437 -4.0039 40 1 0.7245 0.3271 -6.0851 41 1 2.1411 -0.3638 -7.9713 42 1 4.0387 -0.0068 -10.0259 43 1 4.8782 -1.5639 -9.8287 44 1 3.2605 -1.3296 -9.1243 45 1 5.6398 0.6001 -5.6778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063243904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:28 Heat of formation + Delta-G solvation = -79.135448 kcal Electronic energy + Delta-G solvation = -27068.120714 eV Core-core repulsion = 23244.624851 eV Total energy + Delta-G solvation = -3823.495864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52787 -39.52351 -38.43340 -36.91517 -35.29501 -32.92900 -32.03190 -31.82568 -31.13198 -30.17591 -28.98487 -25.98613 -25.15928 -24.29875 -23.19728 -22.32904 -20.99648 -20.25681 -18.91428 -18.10380 -16.93770 -16.40702 -16.22679 -15.92595 -15.35773 -15.26867 -15.08093 -14.91813 -14.63546 -14.21803 -13.93402 -13.79522 -13.75513 -13.21250 -13.17501 -12.69280 -12.60129 -12.39391 -12.28694 -12.11458 -11.81206 -11.70138 -11.63590 -11.38312 -11.35380 -11.02804 -10.90427 -10.83898 -10.55966 -10.38250 -10.32450 -9.98193 -9.94213 -9.13890 -9.02386 -8.51331 -8.14716 -7.51199 -6.39209 -4.07663 0.51919 1.35102 2.28218 3.12034 3.14223 3.22911 3.30530 3.68979 3.74351 3.92135 4.15495 4.64178 4.73298 4.78360 4.83251 4.89455 4.95219 5.07403 5.14247 5.18405 5.33295 5.37240 5.43806 5.44992 5.53800 5.63413 5.70367 5.78240 5.84652 5.89357 6.03543 6.04979 6.16445 6.22639 6.26182 6.30111 6.36269 6.47457 6.52876 6.59782 6.83245 7.15744 7.34804 7.53078 7.54011 8.20109 8.43410 9.09594 9.28435 9.88684 10.64341 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021263 B = 0.003108 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.553870 B = 9006.049447 C = 9711.037227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.091 3.909 4 N -0.435 5.435 5 C -0.307 4.307 6 H 0.091 0.909 7 C 0.040 3.960 8 N -0.870 5.870 9 Si 0.919 3.081 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.466 3.534 14 O -0.557 6.557 15 C 0.068 3.932 16 H 0.083 0.917 17 C -0.174 4.174 18 O -0.281 6.281 19 C 0.131 3.869 20 C -0.184 4.184 21 C -0.092 4.092 22 C -0.122 4.122 23 C -0.137 4.137 24 C 0.395 3.605 25 C -0.198 4.198 26 O -0.455 6.455 27 C -0.097 4.097 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.268 0.732 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 -4.926 -15.754 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.033 4.033 4 N -0.155 5.155 5 C -0.435 4.435 6 H 0.108 0.892 7 C -0.165 4.165 8 N -0.508 5.508 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.252 3.748 14 O -0.438 6.438 15 C 0.008 3.992 16 H 0.101 0.899 17 C -0.231 4.231 18 O -0.192 6.192 19 C 0.084 3.916 20 C -0.202 4.202 21 C -0.110 4.110 22 C -0.140 4.140 23 C -0.138 4.138 24 C 0.273 3.727 25 C -0.255 4.255 26 O -0.330 6.330 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.655 -4.750 -15.512 18.387 hybrid contribution -0.332 -0.041 0.954 1.011 sum -8.987 -4.791 -14.557 17.767 Atomic orbital electron populations 1.21682 0.96215 1.00836 1.01551 1.21950 0.94885 0.99135 1.01905 1.21883 0.82202 0.94949 1.04255 1.43328 1.04436 1.63944 1.03822 1.19395 1.10929 1.26967 0.86197 0.89153 1.25397 0.97022 0.93593 1.00454 1.69865 1.32737 1.16396 1.31769 0.86050 0.78459 0.79321 0.81612 1.20189 1.20763 1.19322 1.19921 0.87955 0.82693 0.84233 1.90567 1.13975 1.52706 1.86532 1.22482 0.92441 0.98117 0.86113 0.89901 1.22360 1.02156 0.95343 1.03227 1.86308 1.35762 1.78768 1.18402 1.19089 0.91470 0.93635 0.87361 1.21658 0.94017 1.04541 1.00008 1.20886 0.99976 0.97671 0.92428 1.21267 0.92098 1.01340 0.99337 1.20246 0.94478 1.03814 0.95302 1.22509 0.88453 0.73575 0.88173 1.22220 1.03212 1.03464 0.96611 1.90561 1.16961 1.42834 1.82638 1.20690 1.00944 0.99192 0.90737 0.93321 0.92581 0.93269 0.93502 0.91288 0.86872 0.92856 0.92144 0.89089 0.90876 0.92058 0.84636 0.85191 0.85051 0.88439 0.89437 0.89395 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 37.15 0.37 -1.59 16 2 C -0.14 -2.42 6.21 -26.73 -0.17 -2.58 16 3 C 0.09 1.84 4.40 -4.04 -0.02 1.82 16 4 N -0.43 -10.68 2.51 -114.80 -0.29 -10.97 16 5 C -0.31 -8.34 8.90 -14.94 -0.13 -8.47 16 6 H 0.09 2.59 7.75 -52.48 -0.41 2.19 16 7 C 0.04 1.02 5.01 -17.47 -0.09 0.93 16 8 N -0.87 -22.45 11.43 55.50 0.63 -21.82 16 9 Si 0.92 20.19 29.59 -169.99 -5.03 15.16 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.47 11.55 6.95 -10.98 -0.08 11.47 16 14 O -0.56 -16.27 16.41 -14.10 -0.23 -16.50 16 15 C 0.07 1.31 1.78 -27.88 -0.05 1.26 16 16 H 0.08 1.39 5.00 -51.93 -0.26 1.13 16 17 C -0.17 -2.90 8.81 37.16 0.33 -2.58 16 18 O -0.28 -5.59 9.35 -39.11 -0.37 -5.96 16 19 C 0.13 2.12 6.61 -39.29 -0.26 1.86 16 20 C -0.18 -2.36 8.39 -39.32 -0.33 -2.69 16 21 C -0.09 -0.92 10.02 -39.68 -0.40 -1.32 16 22 C -0.12 -1.16 9.36 -39.10 -0.37 -1.53 16 23 C -0.14 -1.69 5.87 -105.08 -0.62 -2.30 16 24 C 0.40 4.55 7.23 -30.68 -0.22 4.32 16 25 C -0.20 -1.31 9.75 36.00 0.35 -0.96 16 26 O -0.45 -6.99 17.09 5.58 0.10 -6.90 16 27 C -0.10 -1.49 9.54 -38.94 -0.37 -1.86 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.78 7.64 -51.93 -0.40 0.39 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.11 2.54 5.55 -51.93 -0.29 2.25 16 34 H 0.05 0.95 4.47 -51.93 -0.23 0.71 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.09 1.57 5.95 -51.93 -0.31 1.26 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.06 0.82 6.99 -51.93 -0.36 0.45 16 39 H 0.14 1.60 5.36 -52.49 -0.28 1.32 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.13 0.78 6.35 -52.48 -0.33 0.45 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.09 0.40 6.47 -51.93 -0.34 0.06 16 45 H 0.14 2.34 7.65 -52.49 -0.40 1.94 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -33.18 368.97 -7.80 -40.98 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.12 Total: 4.65 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.05 Total: -4.21 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.35 Total: -32.79 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.50 Total: -29.35 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.18 -7.80 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063243904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.157 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds