Wall clock time and date at job start Tue Mar 31 2020 12:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 N 1.46507 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.37095 * 119.99878 * 271.62979 * 4 3 2 6 6 H 1.08008 * 119.99607 * 140.61031 * 5 4 3 7 7 C 1.38948 * 120.00508 * 320.60844 * 5 4 3 8 8 N 1.31410 * 119.99876 * 340.93116 * 7 5 4 9 9 Si 1.86800 * 120.00245 * 160.92278 * 7 5 4 10 10 H 1.48499 * 109.46956 * 90.00215 * 9 7 5 11 11 H 1.48494 * 109.47273 * 210.00307 * 9 7 5 12 12 H 1.48504 * 109.46880 * 330.00263 * 9 7 5 13 13 C 1.34780 * 119.99723 * 91.63417 * 4 3 2 14 14 O 1.21291 * 119.99918 * 185.04280 * 13 4 3 15 15 C 1.50702 * 120.00089 * 5.04854 * 13 4 3 16 16 H 1.09005 * 109.46664 * 311.41225 * 15 13 4 17 17 C 1.52999 * 109.47293 * 71.41096 * 15 13 4 18 18 O 1.42897 * 109.46881 * 191.41071 * 15 13 4 19 19 C 1.35912 * 116.99668 * 153.32990 * 18 15 13 20 20 C 1.38895 * 119.97441 * 5.97800 * 19 18 15 21 21 C 1.38288 * 120.29507 * 179.97438 * 20 19 18 22 22 C 1.37926 * 120.23714 * 0.02562 * 21 20 19 23 23 C 1.39842 * 119.93787 * 0.02562 * 22 21 20 24 24 C 1.47179 * 120.14670 * 180.02562 * 23 22 21 25 25 C 1.50699 * 119.99906 * 359.97438 * 24 23 22 26 26 O 1.21258 * 120.00148 * 180.02562 * 24 23 22 27 27 C 1.38382 * 119.96933 * 185.70379 * 19 18 15 28 28 H 1.08998 * 109.47696 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47537 * 300.00317 * 1 2 3 30 30 H 1.09004 * 109.47017 * 59.99940 * 1 2 3 31 31 H 1.09004 * 109.47143 * 239.99457 * 2 1 3 32 32 H 1.09004 * 109.47017 * 120.00060 * 2 1 3 33 33 H 1.08999 * 109.46997 * 59.99778 * 3 2 1 34 34 H 1.08997 * 109.46836 * 299.99365 * 3 2 1 35 35 H 0.96997 * 119.99862 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46938 * 307.27786 * 17 15 13 37 37 H 1.09001 * 109.47047 * 67.27704 * 17 15 13 38 38 H 1.08997 * 109.46868 * 187.27701 * 17 15 13 39 39 H 1.07996 * 119.84875 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.87790 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.03692 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.46956 * 90.00728 * 25 24 23 43 43 H 1.09007 * 109.47413 * 210.00181 * 25 24 23 44 44 H 1.08995 * 109.47654 * 330.00051 * 25 24 23 45 45 H 1.08001 * 120.11951 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.4088 1.1877 6 1 5.0860 0.8123 1.2774 7 6 3.7317 2.1419 2.2754 8 7 2.8939 3.1374 2.0907 9 14 4.3061 1.7124 4.0002 10 1 5.5369 2.4803 4.3175 11 1 3.2419 2.0575 4.9767 12 1 4.5962 0.2581 4.0775 13 6 4.1794 1.4755 -1.1659 14 8 5.3888 1.3831 -1.1701 15 6 3.4308 1.6273 -2.4650 16 1 2.6038 0.9176 -2.4928 17 6 2.8841 3.0520 -2.5752 18 8 4.3156 1.3708 -3.5573 19 6 3.7570 0.9177 -4.7105 20 6 2.3752 0.8422 -4.8294 21 6 1.7997 0.3827 -5.9999 22 6 2.5940 -0.0050 -7.0587 23 6 3.9863 0.0659 -6.9494 24 6 4.8382 -0.3460 -8.0767 25 6 4.2104 -0.8462 -9.3521 26 8 6.0452 -0.2839 -7.9788 27 6 4.5653 0.5372 -5.7673 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.5737 3.6489 2.8501 36 1 2.3137 3.2927 -1.6780 37 1 3.7131 3.7523 -2.6774 38 1 2.2362 3.1260 -3.4485 39 1 1.7474 1.1437 -4.0039 40 1 0.7245 0.3271 -6.0851 41 1 2.1411 -0.3638 -7.9713 42 1 4.0387 -0.0068 -10.0259 43 1 4.8782 -1.5639 -9.8287 44 1 3.2605 -1.3296 -9.1243 45 1 5.6398 0.6001 -5.6778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063243904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:27 Heat of formation + Delta-G solvation = -99.127647 kcal Electronic energy + Delta-G solvation = -27068.987641 eV Core-core repulsion = 23244.624851 eV Total energy + Delta-G solvation = -3824.362790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75273 -40.78926 -39.89182 -38.11116 -37.15266 -34.66702 -33.46038 -32.74549 -32.71583 -31.28308 -29.80601 -27.71183 -26.79402 -25.46883 -24.50765 -23.33796 -22.41565 -21.59114 -20.32225 -19.28984 -18.81218 -17.87975 -17.48092 -16.95738 -16.81586 -16.67458 -16.22979 -16.19595 -16.00450 -15.55907 -15.42356 -15.37243 -14.71248 -14.64118 -14.47708 -13.98719 -13.69091 -13.56608 -13.34236 -13.23332 -13.11651 -13.05681 -12.95622 -12.88674 -12.65025 -12.48737 -12.33722 -12.12249 -12.09084 -11.94345 -11.91823 -11.50587 -10.95311 -10.85133 -10.40830 -10.08765 -9.46484 -9.28840 -8.38190 -6.15379 -0.42253 0.39003 1.33977 1.38284 1.39258 1.50392 1.83862 1.87194 2.32400 2.76674 2.93501 2.97820 3.18061 3.58960 3.76400 3.82799 3.93542 3.98067 4.05398 4.15312 4.20949 4.30530 4.33052 4.45023 4.50174 4.56095 4.65594 4.70280 4.70949 4.80865 4.88578 4.96552 5.08035 5.12700 5.14648 5.28806 5.29653 5.30364 5.38842 5.39102 5.44531 5.57993 5.70679 6.15684 6.32080 6.50774 6.52936 7.10819 7.33975 7.94626 8.63510 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021263 B = 0.003108 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.553870 B = 9006.049447 C = 9711.037227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.090 3.910 4 N -0.440 5.440 5 C -0.346 4.346 6 H 0.057 0.943 7 C 0.012 3.988 8 N -0.881 5.881 9 Si 0.979 3.021 10 H -0.280 1.280 11 H -0.261 1.261 12 H -0.270 1.270 13 C 0.443 3.557 14 O -0.622 6.622 15 C 0.084 3.916 16 H 0.112 0.888 17 C -0.164 4.164 18 O -0.322 6.322 19 C 0.094 3.906 20 C -0.182 4.182 21 C -0.079 4.079 22 C -0.094 4.094 23 C -0.148 4.148 24 C 0.392 3.608 25 C -0.188 4.188 26 O -0.510 6.510 27 C -0.131 4.131 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.277 0.723 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.018 -5.694 -18.017 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C -0.033 4.033 4 N -0.159 5.159 5 C -0.474 4.474 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.517 5.517 9 Si 0.802 3.198 10 H -0.206 1.206 11 H -0.185 1.185 12 H -0.194 1.194 13 C 0.232 3.768 14 O -0.508 6.508 15 C 0.025 3.975 16 H 0.129 0.871 17 C -0.221 4.221 18 O -0.236 6.236 19 C 0.049 3.951 20 C -0.200 4.200 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.150 4.150 24 C 0.274 3.726 25 C -0.245 4.245 26 O -0.389 6.389 27 C -0.150 4.150 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.167 0.833 40 H 0.196 0.804 41 H 0.201 0.799 42 H 0.139 0.861 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.731 -5.516 -17.785 23.136 hybrid contribution 1.197 0.189 1.566 1.980 sum -12.534 -5.327 -16.219 21.179 Atomic orbital electron populations 1.21635 0.92574 1.02574 1.02633 1.21880 0.97906 0.96556 1.00971 1.22068 0.79486 0.97193 1.04541 1.43601 1.06220 1.62812 1.03233 1.19295 1.11327 1.28406 0.88411 0.92517 1.26057 0.96826 0.93002 1.03244 1.69911 1.32565 1.16193 1.33066 0.85176 0.78279 0.78823 0.77506 1.20626 1.18504 1.19417 1.20968 0.87757 0.81631 0.86438 1.90504 1.16902 1.55594 1.87850 1.22227 0.91725 1.00192 0.83386 0.87101 1.22316 1.01827 0.93101 1.04895 1.86239 1.37296 1.80214 1.19821 1.19341 0.93372 0.96175 0.86219 1.21899 0.92114 1.04160 1.01835 1.21467 1.02313 0.95160 0.90742 1.21861 0.90233 0.98133 1.00941 1.20571 0.96420 1.03655 0.94306 1.23357 0.87705 0.71975 0.89592 1.22272 1.04144 1.04357 0.93689 1.90553 1.19349 1.45351 1.83695 1.20671 0.99555 1.01887 0.92873 0.91271 0.92924 0.90779 0.93014 0.93786 0.88874 0.90047 0.91364 0.89462 0.93109 0.87699 0.83282 0.80410 0.79866 0.86056 0.89170 0.86112 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.13 -4.53 6.21 30.59 0.19 -4.34 16 3 C 0.09 3.63 4.40 86.38 0.38 4.01 16 4 N -0.44 -22.62 2.51 -635.51 -1.59 -24.22 16 5 C -0.35 -19.92 8.90 84.04 0.75 -19.17 16 6 H 0.06 3.56 7.75 -2.91 -0.02 3.53 16 7 C 0.01 0.66 5.01 84.93 0.43 1.08 16 8 N -0.88 -45.87 11.43 21.66 0.25 -45.62 16 9 Si 0.98 42.22 29.59 68.60 2.03 44.25 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 C 0.44 23.40 6.95 87.66 0.61 24.01 16 14 O -0.62 -39.69 16.41 15.72 0.26 -39.43 16 15 C 0.08 3.30 1.78 29.85 0.05 3.36 16 16 H 0.11 3.59 5.00 -2.38 -0.01 3.58 16 17 C -0.16 -5.43 8.81 71.98 0.63 -4.80 16 18 O -0.32 -13.69 9.35 -73.78 -0.69 -14.38 16 19 C 0.09 3.10 6.61 22.46 0.15 3.25 16 20 C -0.18 -4.13 8.39 22.44 0.19 -3.94 16 21 C -0.08 -1.14 10.02 22.21 0.22 -0.91 16 22 C -0.09 -1.30 9.36 22.58 0.21 -1.09 16 23 C -0.15 -3.45 5.87 -20.16 -0.12 -3.57 16 24 C 0.39 8.67 7.23 28.04 0.20 8.88 16 25 C -0.19 -1.74 9.75 71.24 0.69 -1.05 16 26 O -0.51 -16.61 17.09 -2.96 -0.05 -16.66 16 27 C -0.13 -4.29 9.54 22.68 0.22 -4.08 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.67 7.64 -2.39 -0.02 1.66 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 4.19 5.55 -2.39 -0.01 4.18 16 34 H 0.08 2.77 4.47 -2.39 -0.01 2.76 16 35 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 36 H 0.09 2.93 5.95 -2.39 -0.01 2.91 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.52 6.99 -2.39 -0.02 2.50 16 39 H 0.15 2.90 5.36 -2.91 -0.02 2.88 16 40 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.18 0.67 6.35 -2.91 -0.02 0.65 16 42 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.12 0.32 6.47 -2.39 -0.02 0.31 16 45 H 0.10 4.02 7.65 -2.91 -0.02 4.00 16 Total: -1.00 -84.20 368.97 6.73 -77.47 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 1.01 Total: 19.52 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.52 Total: -0.92 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.35 Total: -69.84 kcal Atomic # 8 Polarization: -70.00 SS G_CDS: -0.48 Total: -70.48 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -84.20 6.73 -77.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063243904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.657 kcal (2) G-P(sol) polarization free energy of solvation -84.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds