Wall clock time and date at job start Tue Mar 31 2020 12:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 N 1.46501 * 109.46986 * 181.51861 * 3 2 1 5 5 C 1.37095 * 119.99610 * 263.18009 * 4 3 2 6 6 H 1.08000 * 120.00053 * 196.72896 * 5 4 3 7 7 C 1.38950 * 120.00018 * 16.73305 * 5 4 3 8 8 N 1.31412 * 120.00075 * 18.87362 * 7 5 4 9 9 Si 1.86802 * 120.00056 * 198.86454 * 7 5 4 10 10 H 1.48502 * 109.46805 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46824 * 120.00068 * 9 7 5 12 12 H 1.48501 * 109.47453 * 240.00236 * 9 7 5 13 13 C 1.34773 * 120.00061 * 83.17935 * 4 3 2 14 14 O 1.21285 * 120.00351 * 5.73874 * 13 4 3 15 15 C 1.50698 * 119.99622 * 185.73298 * 13 4 3 16 16 H 1.09000 * 109.47676 * 47.40639 * 15 13 4 17 17 C 1.53002 * 109.47453 * 287.40225 * 15 13 4 18 18 O 1.42901 * 109.46890 * 167.40175 * 15 13 4 19 19 C 1.35911 * 116.99924 * 203.02182 * 18 15 13 20 20 C 1.38890 * 119.97457 * 356.67757 * 19 18 15 21 21 C 1.38289 * 120.29913 * 180.02562 * 20 19 18 22 22 C 1.37931 * 120.23586 * 0.24774 * 21 20 19 23 23 C 1.39843 * 119.93261 * 359.49954 * 22 21 20 24 24 C 1.47186 * 120.14695 * 180.27523 * 23 22 21 25 25 C 1.50704 * 119.99809 * 0.22503 * 24 23 22 26 26 O 1.21248 * 120.00468 * 180.22696 * 24 23 22 27 27 C 1.38392 * 119.97118 * 176.69391 * 19 18 15 28 28 H 1.08999 * 109.47239 * 299.99716 * 1 2 3 29 29 H 1.08996 * 109.47594 * 60.00272 * 1 2 3 30 30 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46962 * 239.99597 * 2 1 3 32 32 H 1.08998 * 109.46698 * 119.99852 * 2 1 3 33 33 H 1.08995 * 109.47372 * 61.51335 * 3 2 1 34 34 H 1.09009 * 109.47004 * 301.51489 * 3 2 1 35 35 H 0.97004 * 119.99938 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47016 * 294.43305 * 17 15 13 37 37 H 1.08999 * 109.47173 * 54.43227 * 17 15 13 38 38 H 1.09004 * 109.47322 * 174.43230 * 17 15 13 39 39 H 1.08000 * 119.85085 * 359.97438 * 20 19 18 40 40 H 1.08006 * 119.88476 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.03687 * 179.72508 * 22 21 20 42 42 H 1.09005 * 109.47042 * 0.02562 * 25 24 23 43 43 H 1.09006 * 109.47048 * 119.99861 * 25 24 23 44 44 H 1.08990 * 109.47709 * 240.00209 * 25 24 23 45 45 H 1.07998 * 120.11459 * 359.95815 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5045 1.4427 -0.0366 5 6 4.2192 1.5733 1.1260 6 1 5.2643 1.8432 1.0900 7 6 3.5989 1.3584 2.3507 8 7 2.4713 0.6859 2.4071 9 14 4.3680 2.0253 3.9170 10 1 5.6260 2.7411 3.5848 11 1 3.4224 2.9647 4.5716 12 1 4.6667 0.9006 4.8396 13 6 4.1492 1.3144 -1.2132 14 8 3.5213 1.3034 -2.2508 15 6 5.6504 1.1846 -1.2395 16 1 5.9640 0.4429 -0.5049 17 6 6.2851 2.5355 -0.9031 18 8 6.0700 0.7722 -2.5417 19 6 7.2762 0.1527 -2.6339 20 6 8.0702 0.0081 -1.5035 21 6 9.2989 -0.6206 -1.5897 22 6 9.7478 -1.1049 -2.8007 23 6 8.9540 -0.9695 -3.9440 24 6 9.4258 -1.4899 -5.2374 25 6 10.7648 -2.1751 -5.3307 26 8 8.7372 -1.3674 -6.2278 27 6 7.7123 -0.3334 -3.8540 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6990 1.9484 0.9032 34 1 1.6545 1.9641 -0.8762 35 1 2.0381 0.5362 3.2620 36 1 6.0525 3.2524 -1.6906 37 1 5.8888 2.8970 0.0458 38 1 7.3661 2.4197 -0.8249 39 1 7.7269 0.3893 -0.5531 40 1 9.9111 -0.7290 -0.7066 41 1 10.7099 -1.5915 -2.8652 42 1 11.2342 -2.1908 -4.3470 43 1 10.6262 -3.1972 -5.6831 44 1 11.4024 -1.6333 -6.0292 45 1 7.0955 -0.2219 -4.7335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068790164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:30 Heat of formation + Delta-G solvation = -86.197138 kcal Electronic energy + Delta-G solvation = -27026.912310 eV Core-core repulsion = 23203.110228 eV Total energy + Delta-G solvation = -3823.802082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70117 -40.78596 -39.93122 -38.13646 -37.03759 -34.42292 -33.65692 -32.73016 -32.64958 -31.23955 -29.78471 -27.64084 -26.85561 -25.37044 -24.39160 -23.30874 -22.39737 -21.27926 -20.64040 -19.21218 -19.15187 -17.86877 -17.22452 -16.89913 -16.77809 -16.41313 -16.25294 -16.02588 -16.00307 -15.57021 -15.41475 -15.27593 -14.73928 -14.62646 -14.35026 -14.00252 -13.78163 -13.53237 -13.35281 -13.23120 -13.07153 -13.00514 -12.84545 -12.63523 -12.56306 -12.51036 -12.16122 -12.10294 -11.98859 -11.87428 -11.85526 -11.37698 -10.86580 -10.83809 -10.34013 -10.08466 -9.70776 -9.26801 -8.23391 -5.92240 -0.42409 0.39510 1.38465 1.41396 1.53807 1.64764 1.78101 1.98818 2.34291 2.76546 2.97074 3.10681 3.20555 3.72364 3.86630 3.94570 4.01775 4.04998 4.11713 4.17384 4.30299 4.37474 4.47468 4.49570 4.63610 4.65663 4.69251 4.71128 4.84821 4.85724 4.88984 5.02041 5.04821 5.10525 5.17602 5.25604 5.27334 5.30937 5.40474 5.45002 5.51424 5.71769 5.77558 5.91194 6.35365 6.50308 6.51323 7.10613 7.50613 7.92946 8.71153 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.003385 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.184916 B = 8270.906358 C = 9332.599570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.118 4.118 3 C 0.149 3.851 4 N -0.437 5.437 5 C -0.373 4.373 6 H 0.124 0.876 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.987 3.013 10 H -0.253 1.253 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.437 3.563 14 O -0.637 6.637 15 C 0.093 3.907 16 H 0.100 0.900 17 C -0.169 4.169 18 O -0.322 6.322 19 C 0.098 3.902 20 C -0.184 4.184 21 C -0.082 4.082 22 C -0.096 4.096 23 C -0.149 4.149 24 C 0.394 3.606 25 C -0.190 4.190 26 O -0.509 6.509 27 C -0.129 4.129 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.005 0.995 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.273 0.727 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.319 -3.775 0.046 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C 0.026 3.974 4 N -0.154 5.154 5 C -0.499 4.499 6 H 0.141 0.859 7 C -0.200 4.200 8 N -0.508 5.508 9 Si 0.811 3.189 10 H -0.176 1.176 11 H -0.209 1.209 12 H -0.206 1.206 13 C 0.226 3.774 14 O -0.526 6.526 15 C 0.035 3.965 16 H 0.117 0.883 17 C -0.226 4.226 18 O -0.235 6.235 19 C 0.053 3.947 20 C -0.203 4.203 21 C -0.099 4.099 22 C -0.114 4.114 23 C -0.150 4.150 24 C 0.276 3.724 25 C -0.246 4.246 26 O -0.388 6.388 27 C -0.148 4.148 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.024 0.976 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.162 0.838 40 H 0.192 0.808 41 H 0.202 0.798 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.352 -3.721 -0.943 16.797 hybrid contribution -0.764 0.439 0.610 1.072 sum 15.588 -3.282 -0.333 15.933 Atomic orbital electron populations 1.21503 0.94682 1.01372 1.00892 1.21830 0.96334 0.97029 1.00473 1.21101 0.79905 0.97522 0.98894 1.43899 1.05913 1.60237 1.05387 1.20401 0.97779 1.48792 0.82921 0.85905 1.26145 0.96973 0.94883 1.02029 1.70149 1.18989 1.34459 1.27162 0.84955 0.78852 0.77975 0.77121 1.17608 1.20898 1.20607 1.20267 0.89622 0.83585 0.83921 1.90517 1.69462 1.58485 1.34095 1.21946 0.92407 0.99218 0.82971 0.88284 1.22371 1.02084 0.94480 1.03638 1.86178 1.33529 1.72238 1.31603 1.19305 0.85668 0.94455 0.95311 1.21910 0.96964 1.03752 0.97653 1.21441 0.94149 0.94807 0.99541 1.21870 1.00650 0.98709 0.90139 1.20579 0.94665 1.02343 0.97371 1.23301 0.89091 0.74419 0.85604 1.22276 0.92682 1.02444 1.07193 1.90542 1.58428 1.49986 1.39839 1.20656 0.97640 1.00765 0.95733 0.92406 0.93873 0.92240 0.97619 0.88716 0.89743 0.95887 0.91673 0.92724 0.88506 0.88937 0.83834 0.80819 0.79836 0.86505 0.87546 0.87351 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.91 71.98 0.71 -4.13 16 2 C -0.12 -5.58 5.71 30.59 0.17 -5.41 16 3 C 0.15 7.41 4.55 86.38 0.39 7.80 16 4 N -0.44 -22.05 2.64 -635.55 -1.68 -23.73 16 5 C -0.37 -17.29 8.44 84.04 0.71 -16.58 16 6 H 0.12 5.09 4.67 -2.91 -0.01 5.08 16 7 C 0.00 0.17 4.95 84.93 0.42 0.59 16 8 N -0.87 -41.00 8.31 21.66 0.18 -40.82 16 9 Si 0.99 35.18 29.59 68.60 2.03 37.21 16 10 H -0.25 -8.34 7.11 99.48 0.71 -7.64 16 11 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 12 H -0.28 -9.95 7.11 99.48 0.71 -9.25 16 13 C 0.44 22.62 6.94 87.66 0.61 23.23 16 14 O -0.64 -37.99 16.21 15.68 0.25 -37.73 16 15 C 0.09 3.90 1.83 29.85 0.05 3.96 16 16 H 0.10 3.88 5.90 -2.39 -0.01 3.86 16 17 C -0.17 -5.76 8.79 71.98 0.63 -5.13 16 18 O -0.32 -14.16 9.37 -73.82 -0.69 -14.85 16 19 C 0.10 3.45 6.57 22.46 0.15 3.60 16 20 C -0.18 -4.90 8.23 22.44 0.18 -4.71 16 21 C -0.08 -1.45 10.02 22.21 0.22 -1.23 16 22 C -0.10 -1.56 9.45 22.59 0.21 -1.34 16 23 C -0.15 -3.69 5.87 -20.16 -0.12 -3.81 16 24 C 0.39 9.09 7.23 28.04 0.20 9.29 16 25 C -0.19 -1.96 10.19 71.24 0.73 -1.24 16 26 O -0.51 -16.74 17.09 -2.93 -0.05 -16.79 16 27 C -0.13 -4.40 9.54 22.68 0.22 -4.18 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.09 4.74 5.80 -2.39 -0.01 4.73 16 33 H 0.08 4.22 6.23 -2.39 -0.01 4.20 16 34 H 0.02 1.18 7.56 -2.38 -0.02 1.17 16 35 H 0.27 12.10 8.31 -92.71 -0.77 11.33 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 3.31 5.49 -2.39 -0.01 3.29 16 38 H 0.09 2.49 6.79 -2.38 -0.02 2.48 16 39 H 0.14 3.61 5.33 -2.91 -0.02 3.59 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.18 1.08 5.92 -2.91 -0.02 1.07 16 42 H 0.12 0.43 5.60 -2.38 -0.01 0.42 16 43 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.11 4.21 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -72.36 363.04 6.57 -65.79 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 1.02 Total: 30.20 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.50 Total: 0.72 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.50 Total: -64.54 kcal Atomic # 8 Polarization: -68.89 SS G_CDS: -0.49 Total: -69.37 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -72.36 6.57 -65.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068790164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.403 kcal (2) G-P(sol) polarization free energy of solvation -72.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds