Wall clock time and date at job start Tue Mar 31 2020 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00006 * 2 1 4 4 O 1.42901 * 109.47359 * 135.00167 * 3 2 1 5 5 C 1.42897 * 113.99758 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46873 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47130 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08006 * 120.00069 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00220 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99630 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47369 * 14.99133 * 3 2 1 31 31 H 1.09004 * 109.46658 * 255.00076 * 3 2 1 32 32 H 1.08993 * 109.47605 * 59.99819 * 5 4 3 33 33 H 1.08998 * 109.47035 * 299.98986 * 5 4 3 34 34 H 1.09002 * 109.46549 * 59.99766 * 6 5 4 35 35 H 1.08998 * 109.47227 * 300.00205 * 6 5 4 36 36 H 1.09008 * 109.46644 * 60.00251 * 7 6 5 37 37 H 1.08998 * 109.47635 * 300.00447 * 7 6 5 38 38 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 40 40 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9084 2.4349 1.0319 6 6 5.0106 2.2542 2.0777 7 6 5.8479 3.5319 2.1622 8 6 6.9331 3.3541 3.1927 9 8 7.0277 2.3083 3.7994 10 7 7.7984 4.3574 3.4401 11 6 8.8537 4.1844 4.4414 12 6 9.6776 5.4434 4.5256 13 6 10.7898 5.5965 3.7175 14 6 11.5486 6.7501 3.7922 15 6 11.1942 7.7559 4.6699 16 6 10.0816 7.6028 5.4864 17 8 9.7342 8.5871 6.3544 18 6 10.5770 9.6340 6.4618 19 1 11.4385 9.7024 5.8141 20 6 10.3376 10.6228 7.4040 21 7 9.2885 10.5392 8.1932 22 14 11.5057 12.0729 7.5533 23 1 12.5994 11.9320 6.5587 24 1 10.7644 13.3340 7.2979 25 1 12.0817 12.1057 8.9217 26 6 9.3217 6.4426 5.4095 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3855 2.1161 0.2658 31 1 2.4755 1.4867 -0.9927 32 1 3.2690 3.2696 1.3190 33 1 4.3588 2.6394 0.0606 34 1 5.6501 1.4194 1.7909 35 1 4.5600 2.0498 3.0489 36 1 5.2085 4.3670 2.4487 37 1 6.2985 3.7360 1.1909 38 1 7.7224 5.1940 2.9550 39 1 9.4933 3.3496 4.1546 40 1 8.4030 3.9798 5.4125 41 1 11.0660 4.8135 3.0268 42 1 12.4166 6.8666 3.1603 43 1 11.7843 8.6589 4.7241 44 1 9.1213 11.2308 8.8525 45 1 8.4537 6.3221 6.0407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080281060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:55 Heat of formation + Delta-G solvation = -78.536701 kcal Electronic energy + Delta-G solvation = -24498.014198 eV Core-core repulsion = 20674.544298 eV Total energy + Delta-G solvation = -3823.469900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.85362 -39.06947 -38.46350 -36.85749 -34.81982 -34.47200 -33.31483 -32.36310 -30.88089 -29.21898 -27.93605 -26.20070 -25.51321 -24.82949 -22.19385 -21.73203 -20.84356 -20.43210 -20.16959 -17.99455 -17.37939 -16.99339 -16.82033 -16.62390 -15.83932 -15.68728 -15.38651 -15.16455 -14.76339 -14.44613 -14.32920 -13.79134 -13.74636 -13.63601 -13.36364 -12.90982 -12.77764 -12.56945 -12.44182 -12.24322 -12.03319 -11.69482 -11.51831 -11.41149 -11.29686 -11.16376 -10.97967 -10.84745 -10.72503 -10.48519 -10.22142 -9.90702 -9.71399 -9.43690 -9.00109 -8.92143 -8.27353 -7.36136 -6.51874 -4.11483 1.72265 1.87341 2.23569 2.65419 3.06767 3.09406 3.14907 3.17358 3.59833 3.90155 4.44241 4.51825 4.61209 4.66140 4.70603 4.88722 4.92206 4.93307 5.03473 5.05510 5.11873 5.13100 5.19362 5.26993 5.38396 5.43403 5.51923 5.71684 5.81763 5.86797 5.91069 6.02714 6.05032 6.12876 6.21565 6.22178 6.46822 6.52544 6.78515 6.86041 6.96762 7.15621 7.24218 7.32664 7.54981 7.68466 7.92263 8.24390 8.93589 9.61931 10.65904 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.001694 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.778208 B =16526.925680 C =17314.285697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.384 6.384 5 C 0.062 3.938 6 C -0.103 4.103 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.544 6.544 10 N -0.722 5.722 11 C 0.167 3.833 12 C -0.073 4.073 13 C -0.195 4.195 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.177 6.177 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.171 4.171 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.404 0.596 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.270 0.730 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 -13.023 -16.523 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.015 4.015 6 C -0.141 4.141 7 C -0.179 4.179 8 C 0.297 3.703 9 O -0.422 6.422 10 N -0.373 5.373 11 C 0.044 3.956 12 C -0.074 4.074 13 C -0.215 4.215 14 C -0.094 4.094 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.080 6.080 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.191 4.191 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.238 0.762 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.994 -13.764 -15.609 23.086 hybrid contribution 0.629 1.526 -0.336 1.685 sum -9.365 -12.238 -15.945 22.174 Atomic orbital electron populations 1.23854 0.95572 1.02325 1.00070 1.22762 0.95662 0.98278 1.00241 1.21537 0.88985 0.95869 0.92476 1.87920 1.44586 1.37356 1.60472 1.22538 0.92882 0.87150 0.98895 1.21206 0.95784 0.97305 0.99787 1.21547 0.96804 1.00158 0.99349 1.20562 0.82435 0.83586 0.83686 1.90709 1.73118 1.27387 1.50974 1.46162 1.31708 1.17543 1.41893 1.20150 0.88035 0.95173 0.92196 1.19276 0.96292 0.94474 0.97365 1.20480 0.98303 0.99121 1.03595 1.20746 0.98147 0.93289 0.97230 1.21245 1.00865 1.01342 1.01083 1.19326 0.92297 0.88802 0.89927 1.83981 1.45089 1.26545 1.52384 1.21376 1.06931 0.98504 1.20148 0.88972 1.25299 0.97448 0.98751 0.94957 1.70042 1.25925 1.34001 1.19526 0.85643 0.79257 0.79813 0.78689 1.19076 1.20112 1.20077 1.20087 1.02650 0.92845 1.03494 0.88406 0.87760 0.86537 0.92762 0.92353 0.93112 0.93171 0.90281 0.90190 0.88558 0.88689 0.76205 0.90971 0.90870 0.87513 0.87279 0.85452 0.91980 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.31 29.01 0.42 -0.64 16 2 C -0.15 -1.08 9.89 -36.03 -0.36 -1.44 16 3 C 0.09 0.65 6.35 36.00 0.23 0.88 16 4 O -0.38 -3.87 10.33 -35.23 -0.36 -4.23 16 5 C 0.06 0.50 5.94 37.16 0.22 0.72 16 6 C -0.10 -0.99 4.87 -26.73 -0.13 -1.12 16 7 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16 8 C 0.51 6.46 7.83 -10.98 -0.09 6.37 16 9 O -0.54 -9.03 15.98 5.56 0.09 -8.95 16 10 N -0.72 -8.92 5.55 -61.47 -0.34 -9.26 16 11 C 0.17 2.41 5.80 -5.19 -0.03 2.38 16 12 C -0.07 -1.22 5.25 -104.65 -0.55 -1.76 16 13 C -0.20 -3.13 9.70 -39.53 -0.38 -3.51 16 14 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 15 C -0.23 -4.65 9.17 -39.40 -0.36 -5.01 16 16 C 0.15 3.46 6.65 -39.11 -0.26 3.20 16 17 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 18 C -0.39 -10.68 9.49 30.89 0.29 -10.39 16 19 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 22 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 C -0.17 -3.40 9.65 -39.39 -0.38 -3.78 16 27 H 0.10 0.49 7.90 -52.48 -0.41 0.07 16 28 H 0.10 0.49 8.06 -52.49 -0.42 0.06 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.05 0.35 7.86 -51.93 -0.41 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.40 4.30 8.46 -40.82 -0.35 3.95 16 39 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.13 2.64 5.64 -52.48 -0.30 2.34 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -32.40 389.02 -7.83 -40.23 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.78 Total: 6.36 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.03 Total: -16.15 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.42 Total: -33.22 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.27 Total: -18.06 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.40 -7.83 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080281060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.309 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds