Wall clock time and date at job start Tue Mar 31 2020 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00006 * 2 1 4 4 O 1.42901 * 109.47359 * 135.00167 * 3 2 1 5 5 C 1.42897 * 113.99758 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46873 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47130 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08006 * 120.00069 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00220 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99630 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47369 * 14.99133 * 3 2 1 31 31 H 1.09004 * 109.46658 * 255.00076 * 3 2 1 32 32 H 1.08993 * 109.47605 * 59.99819 * 5 4 3 33 33 H 1.08998 * 109.47035 * 299.98986 * 5 4 3 34 34 H 1.09002 * 109.46549 * 59.99766 * 6 5 4 35 35 H 1.08998 * 109.47227 * 300.00205 * 6 5 4 36 36 H 1.09008 * 109.46644 * 60.00251 * 7 6 5 37 37 H 1.08998 * 109.47635 * 300.00447 * 7 6 5 38 38 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 40 40 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9084 2.4349 1.0319 6 6 5.0106 2.2542 2.0777 7 6 5.8479 3.5319 2.1622 8 6 6.9331 3.3541 3.1927 9 8 7.0277 2.3083 3.7994 10 7 7.7984 4.3574 3.4401 11 6 8.8537 4.1844 4.4414 12 6 9.6776 5.4434 4.5256 13 6 10.7898 5.5965 3.7175 14 6 11.5486 6.7501 3.7922 15 6 11.1942 7.7559 4.6699 16 6 10.0816 7.6028 5.4864 17 8 9.7342 8.5871 6.3544 18 6 10.5770 9.6340 6.4618 19 1 11.4385 9.7024 5.8141 20 6 10.3376 10.6228 7.4040 21 7 9.2885 10.5392 8.1932 22 14 11.5057 12.0729 7.5533 23 1 12.5994 11.9320 6.5587 24 1 10.7644 13.3340 7.2979 25 1 12.0817 12.1057 8.9217 26 6 9.3217 6.4426 5.4095 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3855 2.1161 0.2658 31 1 2.4755 1.4867 -0.9927 32 1 3.2690 3.2696 1.3190 33 1 4.3588 2.6394 0.0606 34 1 5.6501 1.4194 1.7909 35 1 4.5600 2.0498 3.0489 36 1 5.2085 4.3670 2.4487 37 1 6.2985 3.7360 1.1909 38 1 7.7224 5.1940 2.9550 39 1 9.4933 3.3496 4.1546 40 1 8.4030 3.9798 5.4125 41 1 11.0660 4.8135 3.0268 42 1 12.4166 6.8666 3.1603 43 1 11.7843 8.6589 4.7241 44 1 9.1213 11.2308 8.8525 45 1 8.4537 6.3221 6.0407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080281060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:55 Heat of formation + Delta-G solvation = -99.673886 kcal Electronic energy + Delta-G solvation = -24498.930775 eV Core-core repulsion = 20674.544298 eV Total energy + Delta-G solvation = -3824.386477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07142 -40.54580 -39.13024 -38.46893 -35.81268 -35.32718 -34.29068 -34.00371 -32.24142 -30.79699 -28.78610 -27.49463 -26.84640 -25.90272 -23.29011 -22.98250 -22.35706 -21.34010 -20.75978 -19.62146 -18.91910 -18.11007 -17.56043 -17.38064 -16.88029 -16.81141 -16.56815 -16.34896 -16.08397 -15.95657 -15.50743 -15.29805 -14.85592 -14.73000 -14.34769 -14.23520 -13.94836 -13.69502 -13.50815 -13.37913 -13.12028 -13.00690 -12.84826 -12.55223 -12.35868 -12.27821 -12.14620 -12.08525 -11.91402 -11.80970 -11.22129 -11.01252 -10.81396 -10.79291 -10.23405 -10.10926 -9.75536 -9.03720 -8.47347 -6.15950 0.38473 0.70154 1.23736 1.36056 1.43761 1.54032 1.66053 2.17064 2.23163 2.80842 2.93907 3.16211 3.40406 3.74024 3.85024 3.97739 4.01171 4.09178 4.18982 4.28881 4.30523 4.37098 4.41069 4.46359 4.52794 4.54366 4.56201 4.61912 4.68408 4.72549 4.77861 4.98463 5.01547 5.11877 5.14132 5.25283 5.25912 5.40977 5.62204 5.65792 5.70403 5.71639 5.72556 6.01482 6.16363 6.28983 6.56966 6.97653 7.25474 7.77759 8.75911 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.001694 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.778208 B =16526.925680 C =17314.285697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.175 4.175 3 C 0.084 3.916 4 O -0.414 6.414 5 C 0.063 3.937 6 C -0.100 4.100 7 C -0.128 4.128 8 C 0.509 3.491 9 O -0.589 6.589 10 N -0.715 5.715 11 C 0.172 3.828 12 C -0.059 4.059 13 C -0.168 4.168 14 C -0.069 4.069 15 C -0.234 4.234 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.181 4.181 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 -13.478 -19.714 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.008 3.992 4 O -0.334 6.334 5 C -0.013 4.013 6 C -0.138 4.138 7 C -0.167 4.167 8 C 0.297 3.703 9 O -0.469 6.469 10 N -0.367 5.367 11 C 0.049 3.951 12 C -0.059 4.059 13 C -0.187 4.187 14 C -0.087 4.087 15 C -0.254 4.254 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.173 1.173 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.201 4.201 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.251 0.749 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.042 -14.244 -18.864 25.308 hybrid contribution 0.309 1.327 0.456 1.437 sum -8.733 -12.917 -18.408 24.124 Atomic orbital electron populations 1.24059 0.95208 1.03366 0.98188 1.22839 0.96274 0.98183 1.02039 1.21682 0.88656 0.96261 0.92566 1.87882 1.45523 1.38508 1.61479 1.22578 0.92531 0.86967 0.99247 1.21134 0.96157 0.97393 0.99104 1.21558 0.95553 1.00153 0.99443 1.21288 0.82671 0.82621 0.83706 1.90699 1.74244 1.29191 1.52778 1.46060 1.31194 1.18134 1.41317 1.20006 0.88505 0.94118 0.92474 1.19454 0.96583 0.93962 0.95925 1.20996 0.96322 0.99191 1.02195 1.21163 0.99117 0.92200 0.96196 1.21375 1.00080 1.02342 1.01588 1.19858 0.94245 0.89181 0.90516 1.83946 1.46763 1.28127 1.55173 1.21866 1.07394 0.98922 1.20645 0.87877 1.26574 0.99282 1.01813 0.94346 1.70188 1.28696 1.35723 1.21279 0.84535 0.77126 0.75568 0.79028 1.17259 1.19395 1.19605 1.20213 1.02367 0.93080 1.04456 0.87389 0.86708 0.87179 0.91794 0.91157 0.91710 0.91103 0.92039 0.92703 0.86328 0.85412 0.74915 0.89707 0.92251 0.83388 0.83319 0.86189 0.91896 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 14.31 67.78 0.97 -0.80 16 2 C -0.18 -2.38 9.89 25.64 0.25 -2.13 16 3 C 0.08 1.14 6.35 71.23 0.45 1.60 16 4 O -0.41 -7.98 10.33 -148.98 -1.54 -9.52 16 5 C 0.06 0.89 5.94 71.99 0.43 1.32 16 6 C -0.10 -1.81 4.87 30.60 0.15 -1.66 16 7 C -0.13 -1.82 5.70 29.85 0.17 -1.65 16 8 C 0.51 11.96 7.83 87.66 0.69 12.65 16 9 O -0.59 -19.27 15.98 -3.01 -0.05 -19.32 16 10 N -0.72 -15.98 5.55 -466.79 -2.59 -18.57 16 11 C 0.17 4.63 5.80 85.63 0.50 5.12 16 12 C -0.06 -1.82 5.25 -19.88 -0.10 -1.92 16 13 C -0.17 -4.63 9.70 22.30 0.22 -4.41 16 14 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 15 C -0.23 -9.49 9.17 22.39 0.21 -9.29 16 16 C 0.11 5.32 6.65 22.58 0.15 5.47 16 17 O -0.23 -13.69 9.76 -22.74 -0.22 -13.91 16 18 C -0.41 -23.37 9.49 67.92 0.64 -22.73 16 19 H 0.10 5.32 5.21 -2.91 -0.02 5.31 16 20 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 21 N -0.92 -55.81 13.67 21.61 0.30 -55.51 16 22 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 23 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 26 C -0.18 -7.32 9.65 22.39 0.22 -7.10 16 27 H 0.11 0.87 7.90 -2.91 -0.02 0.85 16 28 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.11 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.06 0.71 7.86 -2.39 -0.02 0.69 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.41 7.57 8.46 -92.71 -0.78 6.78 16 39 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 40 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 41 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 43 H 0.12 4.97 5.64 -2.91 -0.02 4.95 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -76.58 389.02 3.75 -72.84 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.20 Total: 28.28 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 5.62 Total: -28.21 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -2.29 Total: -74.08 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.81 Total: -42.74 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -76.58 3.75 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080281060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.837 kcal (2) G-P(sol) polarization free energy of solvation -76.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds